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Updates to pool caller scala script due to new paths and cleanup, hop…
…efully with final changes for paper. Added also R script used to process everything into a couple of ggplot-friendly data frames. Functionality is basically the same. Enhancements: -- Add annotation to log axiom and Exome Chip AC along with LOF results for concordance comparisons. -- General Cleanup. -- Used base path for files as a variable in case directory structure in gsa-hpprojects changes again. -- Output also per-pool data by subsetting genotypes per pool and comparing with corresponding genotypes from Axiom, exome chip and omni. -- Commit R scripts that load all tables and crunch them to analyze them.
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