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Merge pull request #382 from broadinstitute/ami-FixBcfCoder-52571227

Ami fix bcf coder 52571227
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eitanbanks committed Aug 21, 2013
2 parents e1174a5 + 0f5bb70 commit cdfd07f9eb4e2ca18b2b6b10d00797cd3a156ebd
@@ -75,7 +75,7 @@ public static VCFHeaderLine getCommandLineArgumentHeaderLine(final GenomeAnalysi
attributes.put("Date", date.toString());
attributes.put("Epoch", Long.toString(date.getTime()));
attributes.put("CommandLineOptions", engine.createApproximateCommandLineArgumentString(argumentSources.toArray()));
- return new VCFSimpleHeaderLine(GATK_COMMAND_LINE_KEY, attributes, Collections.<String>emptyList());
+ return new VCFSimpleHeaderLine(GATK_COMMAND_LINE_KEY, attributes);
}
public static <T extends Feature> Map<String, VCFHeader> getVCFHeadersFromRods(GenomeAnalysisEngine toolkit, List<RodBinding<T>> rodBindings) {
@@ -1,3 +1,3 @@
<ivy-module version="1.0">
- <info organisation="net.sf" module="picard" revision="1.96.1525" status="release" />
+ <info organisation="net.sf" module="picard" revision="1.96.1534" status="release" />
</ivy-module>
@@ -1,3 +0,0 @@
-<ivy-module version="1.0">
- <info organisation="net.sf" module="sam" revision="1.96.1525" status="release" />
-</ivy-module>
@@ -0,0 +1,3 @@
+<ivy-module version="1.0">
+ <info organisation="net.sf" module="sam" revision="1.96.1534" status="release" />
+</ivy-module>
@@ -1,3 +1,3 @@
<ivy-module version="1.0">
- <info organisation="org.broad" module="tribble" revision="1.96.1526" status="integration" />
+ <info organisation="org.broad" module="tribble" revision="1.96.1534" status="integration" />
</ivy-module>
@@ -1,3 +1,3 @@
<ivy-module version="1.0">
- <info organisation="org.broadinstitute" module="variant" revision="1.96.1525" status="integration" />
+ <info organisation="org.broadinstitute" module="variant" revision="1.96.1534" status="integration" />
</ivy-module>

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