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Merge pull request #379 from broadinstitute/mc_dpp_updates_part2

Including SplitByRG in the FullProcessingPipeline
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2 parents 6663d48 + e991307 commit e1174a582dae130a8c26e567dff50b47d5b9d016 @eitanbanks eitanbanks committed Aug 20, 2013
Showing with 1 addition and 1 deletion.
  1. +1 −1 public/scala/src/org/broadinstitute/sting/queue/util/QScriptUtils.scala
@@ -73,7 +73,7 @@ object QScriptUtils {
/**
* Check if there are multiple samples in a BAM file
*/
- def hasMultipleSamples(readGroups: java.util.List[SAMReadGroupRecord]): Boolean = {
+ def hasMultipleSamples(readGroups: Seq[SAMReadGroupRecord]): Boolean = {
var sample: String = ""
for (r <- readGroups) {
if (sample.isEmpty)

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