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Rev picard, sam-jdk, tribble, and variant jars to 1.104.1628

-update VariantFiltration to work with new Lazy wrapper around the
 JexlEngine in VariantContextUtils
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droazen committed Dec 5, 2013
1 parent caf13eb commit 1699b1fb3a0db3e06625d930d355575076ea6c16
@@ -230,7 +230,7 @@ public void initialize() {
filterExps = VariantContextUtils.initializeMatchExps(FILTER_NAMES, FILTER_EXPS);
genotypeFilterExps = VariantContextUtils.initializeMatchExps(GENOTYPE_FILTER_NAMES, GENOTYPE_FILTER_EXPS);
- VariantContextUtils.engine.setSilent(true);
+ VariantContextUtils.engine.get().setSilent(true);
initializeVcfWriter();
}
@@ -1,3 +0,0 @@
-<ivy-module version="1.0">
- <info organisation="net.sf" module="picard" revision="1.102.1595" status="release" />
-</ivy-module>
@@ -0,0 +1,3 @@
+<ivy-module version="1.0">
+ <info organisation="net.sf" module="picard" revision="1.104.1628" status="release" />
+</ivy-module>
@@ -1,3 +0,0 @@
-<ivy-module version="1.0">
- <info organisation="net.sf" module="sam" revision="1.102.1595" status="release" />
-</ivy-module>
@@ -0,0 +1,3 @@
+<ivy-module version="1.0">
+ <info organisation="net.sf" module="sam" revision="1.104.1628" status="release" />
+</ivy-module>
@@ -1,3 +1,3 @@
<ivy-module version="1.0">
- <info organisation="org.broad" module="tribble" revision="1.102.1595" status="integration" />
+ <info organisation="org.broad" module="tribble" revision="1.104.1628" status="integration" />
</ivy-module>
@@ -1,3 +1,3 @@
<ivy-module version="1.0">
- <info organisation="org.broadinstitute" module="variant" revision="1.102.1595" status="integration" />
+ <info organisation="org.broadinstitute" module="variant" revision="1.104.1628" status="integration" />
</ivy-module>

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