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Merge pull request #438 from broadinstitute/rp_vqsr_num_bad_stability…

…_fixes_and_runtime_optimizations

Various VQSR optimizations in runtime and stability.
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2 parents 9efc1b5 + 3c7d94a commit 1cfacdc58d43b129387293e9f0dcf6131ade76be @eitanbanks eitanbanks committed Dec 2, 2013
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