python /home/tim_nevelsk/SOFT/ABC-Enhancer-Gene-Prediction-master/src/predict.py --enhancers $workdir/ABCmodel/EnchancerActivity_rep1/EnhancerList.txt --genes $workdir/ABCmodel/EnchancerActivity_rep1/GeneList.txt --HiCdir $workdir/HiCdata/ --hic_type bedpe --threshold .02 --cellType podocytes --outdir $workdir/ABCmodel/prediction_HiChip --make_all_putativereading genes reading enhancers Making predictions for chromosome: chr15 Making putative predictions table... Begin HiC Loading HiC Traceback (most recent call last): File "/home/tim_nevelsk/miniconda3/lib/python3.7/site-packages/pandas/core/ops/__init__.py", line 968, in na_op result = expressions.evaluate(op, str_rep, x, y, **eval_kwargs) File "/home/tim_nevelsk/miniconda3/lib/python3.7/site-packages/pandas/core/computation/expressions.py", line 221, in evaluate return _evaluate(op, op_str, a, b, **eval_kwargs) File "/home/tim_nevelsk/miniconda3/lib/python3.7/site-packages/pandas/core/computation/expressions.py", line 70, in _evaluate_standard return op(a, b) TypeError: can only concatenate str (not "int") to str During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/home/tim_nevelsk/SOFT/ABC-Enhancer-Gene-Prediction-master/src/predict.py", line 148, in main() File "/home/tim_nevelsk/SOFT/ABC-Enhancer-Gene-Prediction-master/src/predict.py", line 107, in main this_chr = make_predictions(chromosome, this_enh, this_genes, args) File "/home/tim_nevelsk/SOFT/ABC-Enhancer-Gene-Prediction-master/src/predictor.py", line 17, in make_predictions pred = add_hic_to_enh_gene_table(enhancers, genes, pred, hic_file, hic_norm_file, hic_is_vc, chromosome, args) File "/home/tim_nevelsk/SOFT/ABC-Enhancer-Gene-Prediction-master/src/predictor.py", line 81, in add_hic_to_enh_gene_table hic1 = df_to_pyranges(HiC, start_col='x1', end_col='x2', chr_col='chr1') File "/home/tim_nevelsk/SOFT/ABC-Enhancer-Gene-Prediction-master/src/tools.py", line 54, in df_to_pyranges df['End'] = df[end_col] + end_slop File "/home/tim_nevelsk/miniconda3/lib/python3.7/site-packages/pandas/core/ops/__init__.py", line 1048, in wrapper result = na_op(lvalues, rvalues) File "/home/tim_nevelsk/miniconda3/lib/python3.7/site-packages/pandas/core/ops/__init__.py", line 970, in na_op result = masked_arith_op(x, y, op) File "/home/tim_nevelsk/miniconda3/lib/python3.7/site-packages/pandas/core/ops/__init__.py", line 464, in masked_arith_op result[mask] = op(xrav[mask], y) TypeError: can only concatenate str (not "int") to str