Merge pull request #1074 from broadinstitute/symlink_dir_creation

Adding the symlink fix to the hotfix branch
broadinstitute · efe2bed328f2018c8f3b339ffc0997e5483f88df · scottfrazer committed on GitHub Jun 27, 2016 · Jun 27, 2016 · efe2bed
2 parents ed3a155 + 32297a2
commit efe2bed328f2018c8f3b339ffc0997e5483f88df
Unified Split

Showing with 4 additions and 1 deletion.

+4 −1 engine/src/main/scala/cromwell/engine/backend/local/SharedFileSystem.scala
diff --git a/engine/src/main/scala/cromwell/engine/backend/local/SharedFileSystem.scala b/engine/src/main/scala/cromwell/engine/backend/local/SharedFileSystem.scala
@@ -80,7 +80,10 @@ object SharedFileSystem {
     Try(Paths.get(originalPath)) map { srcPath =>
       if (srcPath.toFile.isDirectory)
         Failure(new UnsupportedOperationException("Cannot localize directory with symbolic links"))
-      else Files.createSymbolicLink(executionPath, srcPath.toAbsolutePath)
+      else {
+        executionPath.getParent.createDirectories()
+        Files.createSymbolicLink(executionPath, srcPath.toAbsolutePath)
+      }
     }
   }