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CreateSomaticPanelOfNormals - Improve header content #5609

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af8 opened this issue Jan 28, 2019 · 1 comment

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@af8
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commented Jan 28, 2019

Hi,

CreateSomaticPanelOfNormals results in a VCF file whose header contains information only for one of all the samples used to create it.

  • ##tumor_sample="..."
  • ##GATKCommandLine="..."
  • Possibly other commands like ##bcftools_concatCommand="..."

Feature request

Tool(s) or class(es) involved

CreateSomaticPanelOfNormals

Description

Would it be possible to store in ##tumor_sample= the list of all sample IDs used to create the PON ? The principal aim is to have a better traceability of the whole process in the final VCF header. Also, one will be able to compute the number of normals used, if useful.

Best,
Anthony

@davidbenjamin

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commented Jan 31, 2019

@af8 That seems reasonable. I will add it to our to-do list.

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