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allelespecific
AlleleFraction.java
Annotation.java
AnnotationUtils.java
BaseQuality.java
BaseQualityRankSumTest.java
ChromosomeCounts.java
ClippingRankSumTest.java
Coverage.java
DepthPerAlleleBySample.java
DepthPerSampleHC.java
ExcessHet.java
FisherStrand.java
FragmentLength.java
GenotypeAnnotation.java
GenotypeSummaries.java
HeterozygosityCalculator.java
InbreedingCoeff.java
InfoFieldAnnotation.java
LikelihoodRankSumTest.java
MappingQuality.java
MappingQualityRankSumTest.java
MappingQualityZero.java
OrientationBiasMixtureModelAnnotation.java
OriginalAlignment.java
OxoGReadCounts.java
PedigreeAnnotation.java
PerAlleleAnnotation.java
PolymorphicNuMT.java
PossibleDeNovo.java
QualByDepth.java
RMSMappingQuality.java
RankSumTest.java
ReadOrientationArtifact.java
ReadPosRankSumTest.java
ReadPosition.java
ReferenceBases.java
SampleList.java
StandardAnnotation.java
StandardHCAnnotation.java
StandardMutectAnnotation.java
StrandArtifact.java
StrandBiasBySample.java
StrandBiasTest.java
StrandOddsRatio.java
TandemRepeat.java
UniqueAltReadCount.java
VariantAnnotation.java
VariantAnnotator.java
VariantAnnotatorEngine.java
VariantOverlapAnnotator.java