From f9431e5583d1020e8924d23025858c7e234e0836 Mon Sep 17 00:00:00 2001
From: Mike Wilson <mwilson@broadinstitute.org>
Date: Mon, 4 Aug 2025 15:03:56 -0400
Subject: [PATCH] Add RGQ to the FORMAT_DICT for VCF export

---
 gnomad/utils/vcf.py | 8 ++++++++
 1 file changed, 8 insertions(+)

diff --git a/gnomad/utils/vcf.py b/gnomad/utils/vcf.py
index 97ac02851..f3e64b9ee 100644
--- a/gnomad/utils/vcf.py
+++ b/gnomad/utils/vcf.py
@@ -575,6 +575,14 @@
         "Number": "4",
         "Type": "Integer",
     },
+    "RGQ": {
+        "Description": (
+            "Unconditional reference genotype confidence, encoded as a phred"
+            " quality -10*log10 p(genotype call is wrong)"
+        ),
+        "Number": "1",
+        "Type": "Integer",
+    },
 }
 """
 Dictionary used during VCF export to export MatrixTable entries.