diff --git a/.dockstore.yml b/.dockstore.yml
index bc0324f4c..a999fcfe8 100644
--- a/.dockstore.yml
+++ b/.dockstore.yml
@@ -35,7 +35,7 @@ workflows:
   primaryDescriptorPath: /wdl/deprecated/PBCLRDemultiplexWholeGenome.wdl
 - name: PBCLRWholeGenome
   subclass: wdl
-  primaryDescriptorPath: /wdl/pipelines/PacBio/VariantCalling/PBCLRWholeGenome.wdl
+  primaryDescriptorPath: /wdl/deprecated/PBCLRWholeGenome.wdl
 - name: LRCNVs
   subclass: wdl
   primaryDescriptorPath: /wdl/pipelines/TechAgnostic/VariantCalling/LRCNVs.wdl
diff --git a/wdl/deprecated/PBCLRDemultiplexWholeGenome.wdl b/wdl/deprecated/PBCLRDemultiplexWholeGenome.wdl
index 7f00259db..764a2ac55 100644
--- a/wdl/deprecated/PBCLRDemultiplexWholeGenome.wdl
+++ b/wdl/deprecated/PBCLRDemultiplexWholeGenome.wdl
@@ -10,9 +10,10 @@ import "../tasks/Utility/PBUtils.wdl" as PB
 import "../tasks/Utility/Utils.wdl" as Utils
 import "../tasks/Alignment/AlignReads.wdl" as AR
 import "../tasks/QC/AlignedMetrics.wdl" as AM
-import "../tasks/VariantCalling/CallVariantsPBCLR.wdl" as VAR
 import "../tasks/Utility/Finalize.wdl" as FF
 
+import "tasks/CallVariantsPBCLR.wdl" as VAR
+
 workflow PBCLRDemultiplexWholeGenome {
     input {
         Array[File] bams
diff --git a/wdl/pipelines/PacBio/VariantCalling/PBCLRWholeGenome.wdl b/wdl/deprecated/PBCLRWholeGenome.wdl
similarity index 95%
rename from wdl/pipelines/PacBio/VariantCalling/PBCLRWholeGenome.wdl
rename to wdl/deprecated/PBCLRWholeGenome.wdl
index 4a118f1e4..4d0c1dabe 100644
--- a/wdl/pipelines/PacBio/VariantCalling/PBCLRWholeGenome.wdl
+++ b/wdl/deprecated/PBCLRWholeGenome.wdl
@@ -1,11 +1,11 @@
 version 1.0
 
-import "../../../tasks/Utility/PBUtils.wdl" as PB
-import "../../../tasks/Utility/Utils.wdl" as Utils
-import "../../../tasks/VariantCalling/CallVariantsPBCLR.wdl" as VAR
-import "../../../tasks/Utility/Finalize.wdl" as FF
+import "../tasks/Utility/PBUtils.wdl" as PB
+import "../tasks/Utility/Utils.wdl" as Utils
+import "../tasks/Utility/Finalize.wdl" as FF
+import "../tasks/QC/SampleLevelAlignedMetrics.wdl" as COV
 
-import "../../../tasks/QC/SampleLevelAlignedMetrics.wdl" as COV
+import "tasks/CallVariantsPBCLR.wdl" as VAR
 
 workflow PBCLRWholeGenome {
 
diff --git a/wdl/tasks/VariantCalling/CallVariantsPBCLR.wdl b/wdl/deprecated/tasks/CallVariantsPBCLR.wdl
similarity index 97%
rename from wdl/tasks/VariantCalling/CallVariantsPBCLR.wdl
rename to wdl/deprecated/tasks/CallVariantsPBCLR.wdl
index 6e684f602..f0bc9e011 100644
--- a/wdl/tasks/VariantCalling/CallVariantsPBCLR.wdl
+++ b/wdl/deprecated/tasks/CallVariantsPBCLR.wdl
@@ -6,10 +6,10 @@ version 1.0
 # Each individual task/algo. is directly callable, if so desired.
 ##########################################################################################
 
-import "../Utility/Utils.wdl"
-import "../Utility/VariantUtils.wdl"
+import "../../tasks/Utility/Utils.wdl"
+import "../../tasks/Utility/VariantUtils.wdl"
 
-import "PBSV.wdl"
+import "../../tasks/VariantCalling/PBSV.wdl"
 import "Sniffles.wdl"
 
 
diff --git a/wdl/tasks/VariantCalling/Sniffles.wdl b/wdl/deprecated/tasks/Sniffles.wdl
similarity index 100%
rename from wdl/tasks/VariantCalling/Sniffles.wdl
rename to wdl/deprecated/tasks/Sniffles.wdl