broadinstitute/picard

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Jun 1, 2016 First pass at picard gradle build file.
Jun 1, 2016 First pass at picard gradle build file.	1	<project name="picard" basedir="." default="all">
May 21, 2009 Added build snippet to produce a zip file for distribution
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May 14, 2009 Initial move from samtools to picard
May 14, 2009 Initial move from samtools to picard	3
Jun 1, 2016 First pass at picard gradle build file.
Jun 1, 2016 First pass at picard gradle build file.	4	<property name="gradle.executable" location="gradlew"/>
Jan 22, 2013 Include tribble build/tests in main build.xml, some refactoring.
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Jun 1, 2016 First pass at picard gradle build file.
	6	<echo>
	7	ANT IS DEPRECATED FOR BUILDING Picard
Jan 22, 2013 Include tribble build/tests in main build.xml, some refactoring.
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Jun 1, 2016 First pass at picard gradle build file.
Jun 1, 2016 First pass at picard gradle build file.	9	Please switch to using gradlew
May 14, 2009 Initial move from samtools to picard
May 14, 2009 Initial move from samtools to picard	10
Jun 1, 2016 First pass at picard gradle build file.
	11	Examples:
	12	compile picard or it's tests
	13	./gradlew compileJava
	14	./gradlew compileTest
May 6, 2016 Added gradle build compatibility to picard public. This requires a me…
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Jun 1, 2016 First pass at picard gradle build file.
	16	build a jar
	17	./gradlew jar
May 6, 2016 Added gradle build compatibility to picard public. This requires a me…
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Jun 1, 2016 First pass at picard gradle build file.
	19	build a jar, along with source and document jars
	20	./gradlew build
May 6, 2016 Added gradle build compatibility to picard public. This requires a me…
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Jun 1, 2016 First pass at picard gradle build file.
	22	build a jar that packages all of htsjdk's dependencies in a single jar
	23	./gradlew shadowJar
Jan 20, 2016 test coverage report by jacoco. (fixed build by excluding jacocoant.j…
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Jun 1, 2016 First pass at picard gradle build file.
	25	run tests, or a single test, or run a test and wait for the debugger
	26	./gradlew test
	27	./gradlew test --tests "*ParserTest"
	28	./gradlew test --tests "*ParserTest" --debug-jvm
Jan 20, 2016 test coverage report by jacoco. (fixed build by excluding jacocoant.j…
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Jul 5, 2016 coveralls
	30	run tests and collect coverage information (report will be in `build/reports/jacoco/test/html/index.html`)
	31	./gradlew jacocoTestReport
	32
Jun 1, 2016 First pass at picard gradle build file.
	33	clean the project directory
	34	./gradlew clean
Jul 14, 2010 Added utility method to get the full canonical path for a file, resol…
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Jun 1, 2016 First pass at picard gradle build file.
	36	see an exhaustive list of all available targets
	37	./gradlew tasks
	38	</echo>
Aug 20, 2013 Force compiler to use Java 6 bootclasspath even if JAVA_HOME is Java …
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May 14, 2009 Initial move from samtools to picard
May 14, 2009 Initial move from samtools to picard	40	</project>