build.xml

<project name="picard" basedir="." default="all">


    <property name="gradle.executable" location="gradlew"/>

    <echo>
        ANT IS DEPRECATED FOR BUILDING Picard

        Please switch to using gradlew

        Examples:
        compile picard or it's tests
          ./gradlew compileJava
          ./gradlew compileTest

        build a jar
          ./gradlew jar

        build a jar, along with source and document jars
        ./gradlew build

        build a jar that packages all of htsjdk's dependencies in a single jar
        ./gradlew shadowJar

        run tests, or a single test, or run a test and wait for the debugger
          ./gradlew test
          ./gradlew test --tests "*ParserTest"
          ./gradlew test --tests "*ParserTest" --debug-jvm

        run tests and collect coverage information (report will be in `build/reports/jacoco/test/html/index.html`)
          ./gradlew jacocoTestReport
 
        clean the project directory
          ./gradlew clean

        see an exhaustive list of all available targets
          ./gradlew tasks
    </echo>

</project>