diff --git a/src/main/java/picard/sam/BuildBamIndex.java b/src/main/java/picard/sam/BuildBamIndex.java index 9dea8a64b..b5a554e68 100755 --- a/src/main/java/picard/sam/BuildBamIndex.java +++ b/src/main/java/picard/sam/BuildBamIndex.java @@ -103,7 +103,7 @@ protected int doWork() { final String baseFileName; if (inputUrl != null) { final String path = inputUrl.getPath(); - final int lastSlash = path.lastIndexOf("/"); + final int lastSlash = path.lastIndexOf('/'); baseFileName = path.substring(lastSlash + 1, path.length()); } else { baseFileName = inputFile.getAbsolutePath(); @@ -111,7 +111,7 @@ protected int doWork() { if (baseFileName.endsWith(BamFileIoUtils.BAM_FILE_EXTENSION)) { - final int index = baseFileName.lastIndexOf("."); + final int index = baseFileName.lastIndexOf('.'); OUTPUT = new File(baseFileName.substring(0, index) + BAMIndex.BAMIndexSuffix); } else { diff --git a/src/main/java/picard/sam/FastqToSam.java b/src/main/java/picard/sam/FastqToSam.java index 441d29208..2b8bd8462 100644 --- a/src/main/java/picard/sam/FastqToSam.java +++ b/src/main/java/picard/sam/FastqToSam.java @@ -461,7 +461,7 @@ String getBaseName(final String readName1, final String readName2, final FastqRe private String [] getReadNameTokens(final String readName, final int pairNum, final FastqReader freader) { if(readName.equals("")) throw new PicardException(error(freader,"Pair read name "+pairNum+" cannot be empty: "+readName)); - final int idx = readName.lastIndexOf("/"); + final int idx = readName.lastIndexOf('/'); final String[] result = new String[2]; if (idx == -1) { @@ -489,7 +489,7 @@ private String error(final FastqReader freader, final String str) { // Read names cannot contain blanks private String getReadName(final String fastqHeader, final boolean paired) { - final int idx = fastqHeader.indexOf(" "); + final int idx = fastqHeader.indexOf(' '); String readName = (idx == -1) ? fastqHeader : fastqHeader.substring(0,idx); // NOTE: the while loop isn't necessarily the most efficient way to handle this but we don't