Join GitHub today
GitHub is home to over 40 million developers working together to host and review code, manage projects, and build software together.Sign up
IntervalListTools UNION incorrectly merges records #1272
When IntervalListTools UNION encounters two records with identical coordinates but different name fields, it outputs a single record with only one of the original name fields. E.g.
whereas this is expected:
The expected, name-concatenating, behavior works when the coordinates to be merged are not identical:
GATK command used:
User question for reference: https://gatkforums.broadinstitute.org/gatk/discussion/comment/55783#Comment_55783