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broadinstitute/picard

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incorrect tests were removed from the deprecated CrossChekReadgroupFingerprint
#869 opened Jul 13, 2017 by yfarjoun
use Static file endings for ".vcf", ".bcf", ".vcf.gz"
#854 opened Jul 5, 2017 by yfarjoun
Should CollectHsMetrics also emit PCT@5x? secon Vanilla
#852 opened Jul 5, 2017 by yfarjoun

4
Rev Htsjdk and fix the build error.
#815 opened May 16, 2017 by yfarjoun 0 of 2
How to tell if VCFFileReader has an index?
#814 opened May 16, 2017 by yfarjoun

1
AlignmentSummaryMetrics collects very few metrics when not given the reference
#779 opened Mar 28, 2017 by yfarjoun
Discussion about MergableMetrics
#746 opened Feb 5, 2017 by yfarjoun
Upstream deletions and CollectVariantCallingMetrics do not play nice right now. can of worms
#555 opened Jun 3, 2016 by yfarjoun

22
Picard MarkDuplicates lacks tests regarding the tagging of duplicates. tests
#513 opened Apr 14, 2016 by yfarjoun
CrossCheckReadGroupFingerprints dies with an NPE if a @RG tag is not complete bug cleanup error handling
#383 opened Jan 11, 2016 by yfarjoun
Enable COLLECTION_LEVEL argument in CollectSequencingArtifacts Metrics feature
#364 opened Dec 22, 2015 by yfarjoun

1
modify code in CollectInsertSizeMetrics to also collect the actual insert length feature
#343 opened Nov 18, 2015 by yfarjoun

9
add percent GQ0 to CollectVariantCallingMetrics feature
#286 opened Sep 15, 2015 by yfarjoun

8

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