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CollectIlluminaLaneMetrics does not handle read structures with molecular indexes bug#688 opened
Nov 17, 2016 by nh13 -
Running certain tests produces phantom "bai" files that bothers git bug Vanilla#660 opened
Sep 20, 2016 by SHuang-Broad -
MergeBamAlignment creates invalid BAMs in the presence of secondary alignments bug#589 opened
Jul 7, 2016 by tfenne -
ValidateSamFile doesn't catch duplicated reads depending on their order bug can of worms#454 opened
Feb 22, 2016 by meganshand -
[Bug] When removing duplicates, MarkDuplicates does not remove unmapped records whose mate is a duplicate bug#451 opened
Feb 18, 2016 by sooheelee -
CrossCheckReadGroupFingerprints dies with an NPE if a @RG tag is not complete bug cleanup error handling#383 opened
Jan 11, 2016 by yfarjoun
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