diff --git a/tools/krona.py b/tools/krona.py index 5cebb0737..0b96d8fab 100644 --- a/tools/krona.py +++ b/tools/krona.py @@ -29,6 +29,7 @@ def opt(self): bin_path = os.path.dirname(self.executable_path()) # Get at the opt directory from the conda env root opt = os.path.abspath(join(bin_path, '..', 'opt', 'krona')) + util.misc.run_and_print(['ktGetLibPath']) return opt def import_taxonomy(self, input_tsvs, output, query_column=None, taxid_column=None, diff --git a/travis/tests-long.sh b/travis/tests-long.sh index 596e4e909..50fc1a6d5 100755 --- a/travis/tests-long.sh +++ b/travis/tests-long.sh @@ -9,12 +9,11 @@ if [ $TRAVIS_PULL_REQUEST != "false" -o $TRAVIS_BRANCH = "master" -o -n "$TRAVIS nosetests -v \ --logging-clear-handlers \ --with-timer \ - --with-xunit \ - -w test/integration/ - # --with-xunit --with-coverage \ - # --cover-inclusive --cover-branches --cover-tests \ - # --cover-package broad_utils,illumina,assembly,interhost,intrahost,metagenomics,ncbi,read_utils,reports,taxon_filter,tools,util \ - + --with-xunit --with-coverage \ + --cover-inclusive --cover-branches --cover-tests \ + --cover-package broad_utils,illumina,assembly,interhost,intrahost,metagenomics,ncbi,read_utils,reports,taxon_filter,tools,util \ + test/integration/test_kraken.py + # -w test/integration else echo "This is not a pull request: skipping long running tests." fi