diff --git a/docs/install.rst b/docs/install.rst index ab619e8c6..ad5b81127 100644 --- a/docs/install.rst +++ b/docs/install.rst @@ -97,7 +97,7 @@ In order to finish installing viral-ngs, you will need to activate its conda env source activate viral-ngs-env -Due to license restrictions, the viral-ngs conda package cannot distribute and install GATK directly. To fully install GATK, you must download a licensed copy of GATK v3.6 `from the Broad Institute `_, and call "gatk3-register," which will copy GATK into your viral-ngs conda environment:: +Due to license restrictions, the viral-ngs conda package cannot distribute and install GATK directly. To fully install GATK, you must download a licensed copy of GATK v3.8 `from the Broad Institute `_, and call "gatk3-register," which will copy GATK into your viral-ngs conda environment:: mkdir -p /path/to/gatk_dir wget -O - 'https://software.broadinstitute.org/gatk/download/auth?package=GATK-archive&version=3.6-0-g89b7209' | tar -xjvC /path/to/gatk_dir