From e81b65d7e4247ccd6af209684da12c025d95d666 Mon Sep 17 00:00:00 2001 From: Chris Tomkins-Tinch Date: Thu, 11 Jul 2019 11:06:40 -0400 Subject: [PATCH] s/Int/Float/ for contig alignment threshold (#975) --- pipes/WDL/workflows/tasks/tasks_assembly.wdl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pipes/WDL/workflows/tasks/tasks_assembly.wdl b/pipes/WDL/workflows/tasks/tasks_assembly.wdl index 31d779f5f..c4eb36fc4 100644 --- a/pipes/WDL/workflows/tasks/tasks_assembly.wdl +++ b/pipes/WDL/workflows/tasks/tasks_assembly.wdl @@ -101,7 +101,7 @@ task scaffold { Int? nucmer_max_gap Int? nucmer_min_match Int? nucmer_min_cluster - Int? scaffold_min_pct_contig_aligned + Float? scaffold_min_pct_contig_aligned # do this in multiple steps in case the input doesn't actually have "assembly1-x" in the name String sample_name = basename(basename(basename(contigs_fasta, ".fasta"), ".assembly1-trinity"), ".assembly1-spades")