diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml index 67558fe4..6697202a 100644 --- a/.github/workflows/build.yml +++ b/.github/workflows/build.yml @@ -187,7 +187,7 @@ jobs: mkdir coverage - name: test with docker run: | - docker run -e _JAVA_OPTIONS -e PYTEST_ADDOPTS -v `pwd`/coverage:/coverage -v `pwd`/test:/opt/viral-ngs/source/test --entrypoint /bin/bash $DOCKER_TAG -c 'set -e; cd /opt/viral-ngs/source; env; python -c "import locale; print(locale.getpreferredencoding(False))"; pytest test/unit; cp .coverage /coverage' + docker run -e _JAVA_OPTIONS -e PYTEST_ADDOPTS -v `pwd`/coverage:/coverage -v `pwd`/test:/opt/viral-ngs/source/test:rw --entrypoint /bin/bash $DOCKER_TAG -c 'set -e; cd /opt/viral-ngs/source; env; python -c "import locale; print(locale.getpreferredencoding(False))"; pytest test/unit; cp .coverage /coverage' - name: run coveralls run: | mv coverage/.coverage .