diff --git a/scripts/tutorials/wdl/SimpleVariantDiscovery.wdl b/scripts/tutorials/wdl/SimpleVariantDiscovery.wdl index a2b7458..0d3c9c9 100644 --- a/scripts/tutorials/wdl/SimpleVariantDiscovery.wdl +++ b/scripts/tutorials/wdl/SimpleVariantDiscovery.wdl @@ -117,7 +117,6 @@ task select { #for any part of the filterExpression (i.e. if a variant has a QD of 1.3, it would be #filtered out). The variant calls remain in the file, but they are tagged as not passing. #GATK tools downstream in the pipeline will ignore filtered calls by default -task hardFilterSNP task hardFilterSNP { File GATK File RefFasta