broadinstitute/wdl

Commits on Jan 17, 2017

prefix() proposal. Closes broadinstitute/cromwell#375

mcovarr committed Jan 9, 2017

8ec60c2
Merge pull request #79 from broadinstitute/mlc_length_nee_size
```
document at length.  Closes broadinstitute/cromwell#1604
```
mcovarr committed on GitHub Jan 17, 2017
002e054

Commits on Jan 15, 2017

Add Geraldine

geoffjentry committed on GitHub Jan 15, 2017

bd10851
Merge pull request #80 from broadinstitute/gvda_subset_scatter_intervals
```
Add script to generate subsets of scatter intervals from master list
```
vdauwera committed on GitHub Jan 15, 2017
db70b71
Added a script that generates subsets of scatter intervals from a mas…
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…ter list
```
vdauwera committed Jan 7, 2017
b3eb27d

Commits on Jan 13, 2017

Merge pull request #81 from broadinstitute/gvda_supported_dir_readme_…
```
…plus_generic_options

New directory for DSDE-supported-but-not-prod WDLs
```
vdauwera committed on GitHub Jan 13, 2017
2cdd412
New directory for supported-but-not-prod WDLs; includes README and a …
```
…generic options file
```
vdauwera committed Jan 8, 2017
8c9daf3

Commits on Jan 12, 2017

Merge pull request #77 from broadinstitute/cjl_conditionals_documenta…
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…tion

Documenting conditionals
```
cjllanwarne committed on GitHub Jan 12, 2017
6efbd6e

Commits on Jan 6, 2017

document at length

mcovarr committed Jan 6, 2017

762cbd8

Commits on Jan 3, 2017

Documenting conditionals

cjllanwarne committed Jan 3, 2017

52dd55d

Commits on Dec 16, 2016

Kv spec closes Cromwell #1300 (#76 )

Added Cromwell supported sign to WDL Features, and added Coming Soon to Cromwell sign for unsupported Features

katevoss committed on GitHub

Dec 16, 2016

05b09e6

Commits on Dec 7, 2016

Update import statement docs (#75 )
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* update import statement docs and add WDL Pair documentation
```
ruchim committed on GitHub Dec 7, 2016
beae77f

Commits on Dec 2, 2016

update to include (parameter) meta (#74 )
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* update to include (parameter) meta
```
geoffjentry committed on GitHub Dec 2, 2016
be68382

Commits on Nov 22, 2016

Subworkflow WDL Doc (#72 )
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* Subworkflow WDL Doc
```
Horneth committed on GitHub Nov 22, 2016
2116c6b

Commits on Oct 27, 2016

Merge pull request #69 from broadinstitute/jt_readme
```
Fix URL in Readme
```
vdauwera committed on GitHub Oct 27, 2016
28d4997

Commits on Oct 25, 2016

correct URL

jmthibault79 committed Oct 25, 2016

797aaf8

Commits on Oct 18, 2016

Merge pull request #66 from broadinstitute/cjl_range_transpose_spec
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Added definitions of range and transpose
```
cjllanwarne committed on GitHub Oct 18, 2016
830943d
Added range and transpose functions

cjllanwarne committed Oct 18, 2016

f407c31

Commits on Oct 12, 2016

Merge pull request #61 from mlin/develop
```
Strike extraneous line from SimpleVariantDiscovery.wdl example (typo probably)
```
vdauwera committed on GitHub Oct 12, 2016
b2e3c09

Commits on Oct 5, 2016

Merge pull request #60 from broadinstitute/vd_fix_index_cram
```
updated PairedEndSingleSample WDL so indexing a CRAM doesn't talk to a remote server.
```
vivster7 committed on GitHub Oct 5, 2016
4d7954a
add back inputs and options to the archive for 07/20/16

Vivek Dasari committed Oct 5, 2016

ef264f9

Commits on Sep 28, 2016

Strike extraneous line from SimpleVariantDiscovery.wdl example (typo …
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…probably)
```
mlin committed on GitHub Sep 28, 2016
41083c3

Commits on Sep 27, 2016

Generate new public

Vivek Dasari committed Sep 27, 2016

dbf6779

Commits on Sep 9, 2016

Merge pull request #58 from broadinstitute/knoblett-gatkWrapper
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Add gatkToWdlWrapper
```
knoblett committed on GitHub Sep 9, 2016
b35001a
Add gatkToWdlWrapper, testWDLTasks.py, all auto-generated WDL tasks f…
```
…or GATK 3.6, and a README to explain use.
```
knoblett committed with knoblett Sep 8, 2016
2f69cf4

Commits on Aug 15, 2016

Remove `BETA` label as all links are now live
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Link to Tutorial#8017 is no longer broken as the article is now public.
```
sooheelee committed on GitHub Aug 15, 2016
d8c1245

Commits on Aug 12, 2016

Merge pull request #53 from broadinstitute/shlee_upload_new_scripts
```
WDLs for a GATK tutorial
```
sooheelee committed on GitHub Aug 12, 2016
dce6c85

Commits on Aug 10, 2016

Merge pull request #52 from broadinstitute/knoblett-updatePaths
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Update filepath, add links to tutorial, add JSONs, add README, rename Public pipeline doc
```
knoblett committed on GitHub Aug 10, 2016
124a2cc
Update filepath, add links to tutorial, add JSONs, add README, rename…
```
… Public pipeline doc
```
knoblett committed with knoblett Aug 8, 2016
4385d17

Added WDLs for a GATK tutorial and a readme for the GATK folder

	Add WDL scripts and JSON examples for GATK Tutorial#8017
	Add two more tutorial WDLs and modify tutorial_8017.wdl
	Add README.md file for gatk folder

sooheelee committed Aug 4, 2016

3e9fe23

Commits on Aug 2, 2016

Merge pull request #48 from broadinstitute/gvda_update_gotc_json_buck…
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…etpaths

Update bucket filepaths in gotc json
```
vdauwera committed on GitHub Aug 2, 2016
57f9165
Update bucket filepaths in gotc json

vdauwera committed Aug 2, 2016

196c458

Commits on Aug 1, 2016

Merge pull request #47 from sooheelee/patch-1
```
Add documentation for PESS pipeline
```
vdauwera committed on GitHub Aug 1, 2016
7eb4a7b
Merge pull request #46 from broadinstitute/knoblett-forumWdls
```
Add WDL scripts from forum
```
knoblett committed on GitHub Aug 1, 2016
0fd3809
Create jointCallingGenotypes, simpleVariantSelection, simpleVariantDi…
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…scovery, helloHaplotypeCaller
```
knoblett committed with knoblett Jul 28, 2016
9cdc4fa

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