/wdl

Permalink
Switch branches/tags
Nothing to show
Commits on Sep 15, 2016
  1. @vdauwera

    more wdls...

    vdauwera committed Sep 15, 2016
    50b4dd0
Commits on Sep 7, 2016
  1. @vdauwera

    added a bunch of new others -- don't merge yet

    vdauwera committed Sep 7, 2016
    0b88bb6
Commits on Sep 2, 2016
  1. @vdauwera

    refine header grabber + add draft of fastq from bam converter

    vdauwera committed Sep 2, 2016
    762cb47
  2. @vdauwera

    Add a WDL that extracts headers from bam files

    vdauwera committed Sep 2, 2016
    05fc537
Commits on Aug 15, 2016
  1. @sooheelee

    Remove `BETA` label as all links are now live 

    Link to Tutorial#8017 is no longer broken as the article is now public.
    sooheelee committed on GitHub Aug 15, 2016
    d8c1245
Commits on Aug 12, 2016
  1. @sooheelee

    Merge pull request #53 from broadinstitute/shlee_upload_new_scripts 

    WDLs for a GATK tutorial
    sooheelee committed on GitHub Aug 12, 2016
    dce6c85
Commits on Aug 10, 2016
  1. @knoblett

    Merge pull request #52 from broadinstitute/knoblett-updatePaths 

    Update filepath, add links to tutorial, add JSONs, add README, rename Public pipeline doc
    knoblett committed on GitHub Aug 10, 2016
    124a2cc
  2. @knoblett @knoblett

    Update filepath, add links to tutorial, add JSONs, add README, rename… 

    … Public pipeline doc
    knoblett committed with knoblett Aug 8, 2016
    4385d17
  3. @sooheelee

    Added WDLs for a GATK tutorial and a readme for the GATK folder 

    	Add WDL scripts and JSON examples for GATK Tutorial#8017
	Add two more tutorial WDLs and modify tutorial_8017.wdl
	Add README.md file for gatk folder
    sooheelee committed Aug 4, 2016
    3e9fe23
Commits on Aug 2, 2016
  1. @vdauwera

    Merge pull request #48 from broadinstitute/gvda_update_gotc_json_buck… 

    …etpaths

Update bucket filepaths in gotc json
    vdauwera committed on GitHub Aug 2, 2016
    57f9165
  2. @vdauwera

    Update bucket filepaths in gotc json

    vdauwera committed Aug 2, 2016
    196c458
Commits on Aug 1, 2016
  1. @vdauwera

    Merge pull request #47 from sooheelee/patch-1 

    Add documentation for PESS pipeline
    vdauwera committed on GitHub Aug 1, 2016
    7eb4a7b
  2. @knoblett

    Merge pull request #46 from broadinstitute/knoblett-forumWdls 

    Add WDL scripts from forum
    knoblett committed on GitHub Aug 1, 2016
    0fd3809
  3. @knoblett @knoblett

    Create jointCallingGenotypes, simpleVariantSelection, simpleVariantDi… 

    …scovery, helloHaplotypeCaller
    knoblett committed with knoblett Jul 28, 2016
    9cdc4fa
  4. @sooheelee

    Add documentation for PESS pipeline 

    Mirrors documentation at <https://software.broadinstitute.org/gatk/documentation/article?id=7899>.
    sooheelee committed on GitHub Aug 1, 2016
    44c56ac
Commits on Jul 28, 2016
  1. @vdauwera

    Merge pull request #45 from broadinstitute/gvda_update_inputs_json 

    Replace inputs template with working example
    vdauwera committed on GitHub Jul 28, 2016
    b26ee3f
  2. @vdauwera

    Replace inputs template with working example

    vdauwera committed Jul 28, 2016
    a24f05f
Commits on Jul 21, 2016
  1. @vdauwera

    Merge pull request #44 from broadinstitute/gvda_update_singsampwdl_16… 

    …0720

Update PairedSingleSampleWf wdl+json to 160720
    vdauwera committed on GitHub Jul 21, 2016
    cc053ad
  2. @vdauwera

    Update PairedSingleSampleWf wdl+json to 160720

    vdauwera committed Jul 21, 2016
    1c97908
Commits on Jul 19, 2016
  1. @vdauwera

    Merge pull request #42 from broadinstitute/gvda_update_public_broad_p… 

    …rod_wdls

Update PairedSingleSampleWf and add JSON of inputs
    vdauwera committed on GitHub Jul 19, 2016
    7fae872
  2. @vdauwera

    Update PairedSingleSampleWf and add JSON

    vdauwera committed Jul 14, 2016
    0e2e852
Commits on Jul 7, 2016
  1. @kcibul

    Merge pull request #41 from broadinstitute/gvda_fixlink 

    Fixed broken link
    kcibul committed on GitHub Jul 7, 2016
    f1c8e37
  2. @vdauwera

    Merge pull request #36 from broadinstitute/gvda_add_scripts_section 

    Add the production WDL for the GOTC single-sample pipeline + READMEs
    vdauwera committed on GitHub Jul 7, 2016
    ee6c0da
Commits on Jul 5, 2016
  1. @vdauwera

    Add the production WDL for the GOTC single-sample pipeline

    vdauwera committed Apr 22, 2016
    9b1f513
Commits on Jun 30, 2016
  1. @vdauwera

    Fixed broken link 

    Fixes #40
    vdauwera committed on GitHub Jun 30, 2016
    481aebb
Commits on Apr 25, 2016
  1. @scottfrazer

    Merge pull request #38 from broadinstitute/jg_change_preamble 

    Pointers to site in the intro
    scottfrazer committed Apr 25, 2016
    b4d7421
Commits on Apr 22, 2016
  1. @geoffjentry

    Pointers to site in the intro

    geoffjentry committed Apr 22, 2016
    cf1846d
Commits on Apr 19, 2016
  1. @scottfrazer

    Merge pull request #35 from mbookman/develop 

    Corrects "inputs" command reference, which moved from Cromwell to wdltool
    scottfrazer committed Apr 19, 2016
    f626822
Commits on Apr 14, 2016
  1. @mbookman

    Corrects "inputs" command reference, which moved from Cromwell to wdl… 

    …tool.

Fixes a few wdl examples, which did not work as documented.
Fixes a few instances where output did not match with the wdl.
Added output examples where omitted.
    mbookman committed Apr 14, 2016
    4359ce0
Commits on Mar 24, 2016
  1. @Horneth

    Merge pull request #32 from broadinstitute/subFunction 

    Add sub function to Spec
    Horneth committed Mar 24, 2016
    00b4629
  2. @Horneth

    Add sub function to Spec

    Horneth committed Mar 23, 2016
    997daff
Commits on Mar 8, 2016
  1. @cjllanwarne

    Merge pull request #31 from broadinstitute/cjl_pullapprove_fixup 

    removed non-collaborators from .pullapprove.yml
    cjllanwarne committed Mar 8, 2016
    366e687
  2. @cjllanwarne

    removed non-collaborators from .pullapprove.yml

    cjllanwarne committed Mar 8, 2016
    27a28e5
  3. @cjllanwarne

    Merge pull request #30 from broadinstitute/cjl_pullapprove 

    Create .pullapprove.yml
    cjllanwarne committed Mar 8, 2016
    3439cac
  4. @cjllanwarne

    Create .pullapprove.yml

    cjllanwarne committed Mar 8, 2016
    23aee16