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Commits on Mar 6, 2017
  1. @vdauwera

    fixup

    vdauwera committed Mar 6, 2017
    0ce40d3
  2. @vdauwera

    Updated revert script to split RGs up front for scalability

    vdauwera committed Mar 6, 2017
    c4b84f5
Commits on Feb 24, 2017
  1. @geoffjentry

    checkpoint

    geoffjentry committed Feb 24, 2017
    7bdd8fd
Commits on Feb 22, 2017
  1. @sidoruka @geoffjentry

    JavaScript support for a Hermes WDL grammar (#94) 

    * JavaScript support for a Hermes WDL grammar
    sidoruka committed with geoffjentry Feb 22, 2017
    86f4916
  2. @Horneth @geoffjentry

    update grammar file to match Cromwell supported WDL version (#95)

    Horneth committed with geoffjentry Feb 22, 2017
    90f3514
Commits on Feb 8, 2017
  1. @kshakir

    Added katevoss and alphabetized pullapprove

    kshakir committed Feb 8, 2017
    fa88c3b
Commits on Jan 23, 2017
  1. @mcovarr

    Merge pull request #85 from broadinstitute/mlc_prefix_redux 

    prefix redux
    mcovarr committed on GitHub Jan 23, 2017
    35faef8
  2. @geoffjentry

    add ruchi

    geoffjentry committed on GitHub Jan 23, 2017
    16c6244
  3. @mcovarr

    prefix redux

    mcovarr committed Jan 17, 2017
    1387e51
Commits on Jan 22, 2017
  1. @vdauwera

    Merge pull request #83 from broadinstitute/gvda_reversion_wdls 

    WDLs to revert/convert between BAM, FASTQ and uBAM
    vdauwera committed on GitHub Jan 22, 2017
    7ac575f
  2. @vdauwera

    WDLs for generic conversion/reversion use cases 

     - revert batch of single-readgroup SAM/BAMs to FASTQ
 - convert batch of paired FASTQs to uBAM per readgroup
 - revert multi-readgroup SAM/BAM to uBAM
    vdauwera committed Jan 8, 2017
    575a3c3
Commits on Jan 21, 2017
  1. @vdauwera

    Merge pull request #82 from broadinstitute/gvda_trivial_bam_manipulation 

    WDLs for trivial bam manipulation
    vdauwera committed on GitHub Jan 21, 2017
    9f7bfa8
  2. @vdauwera

    WDLs for trivial BAM manipulations 

        - WDL to extract the SAM headers from a list of BAMs
    - WDL to validate a list of SAM/BAM files
    vdauwera committed Jan 8, 2017
    dc8d09d
Commits on Jan 17, 2017
  1. @mcovarr

    Merge pull request #84 from broadinstitute/mlc_join 

    prefix() proposal.  Closes broadinstitute/cromwell#375
    mcovarr committed on GitHub Jan 17, 2017
    944ebea
  2. @mcovarr

    prefix() proposal. Closes broadinstitute/cromwell#375

    mcovarr committed Jan 9, 2017
    8ec60c2
  3. @mcovarr

    Merge pull request #79 from broadinstitute/mlc_length_nee_size 

    document at length.  Closes broadinstitute/cromwell#1604
    mcovarr committed on GitHub Jan 17, 2017
    002e054
Commits on Jan 15, 2017
  1. @geoffjentry

    Add Geraldine

    geoffjentry committed on GitHub Jan 15, 2017
    bd10851
  2. @vdauwera

    Merge pull request #80 from broadinstitute/gvda_subset_scatter_intervals 

    Add script to generate subsets of scatter intervals from master list
    vdauwera committed on GitHub Jan 15, 2017
    db70b71
  3. @vdauwera

    Added a script that generates subsets of scatter intervals from a mas… 

    …ter list
    vdauwera committed Jan 7, 2017
    b3eb27d
Commits on Jan 13, 2017
  1. @vdauwera

    Merge pull request #81 from broadinstitute/gvda_supported_dir_readme_… 

    …plus_generic_options

New directory for DSDE-supported-but-not-prod WDLs
    vdauwera committed on GitHub Jan 13, 2017
    2cdd412
  2. @vdauwera

    New directory for supported-but-not-prod WDLs; includes README and a … 

    …generic options file
    vdauwera committed Jan 8, 2017
    8c9daf3
Commits on Jan 12, 2017
  1. @cjllanwarne

    Merge pull request #77 from broadinstitute/cjl_conditionals_documenta… 

    …tion

Documenting conditionals
    cjllanwarne committed on GitHub Jan 12, 2017
    6efbd6e
Commits on Jan 6, 2017
  1. @mcovarr

    document at length

    mcovarr committed Jan 6, 2017
    762cbd8
Commits on Jan 3, 2017
  1. @cjllanwarne

    Documenting conditionals

    cjllanwarne committed Jan 3, 2017
    52dd55d
Commits on Dec 16, 2016
  1. @katevoss

    Kv spec closes Cromwell #1300 (#76) 

    Added Cromwell supported sign to WDL Features, and added Coming Soon to Cromwell sign for unsupported Features
    katevoss committed on GitHub Dec 16, 2016
    05b09e6
Commits on Dec 7, 2016
  1. @ruchim

    Update import statement docs (#75) 

    * update import statement docs and add WDL Pair documentation
    ruchim committed on GitHub Dec 7, 2016
    beae77f
Commits on Dec 2, 2016
  1. @geoffjentry

    update to include (parameter) meta (#74) 

    * update to include (parameter) meta
    geoffjentry committed on GitHub Dec 2, 2016
    be68382
Commits on Nov 22, 2016
  1. @Horneth

    Subworkflow WDL Doc (#72) 

    * Subworkflow WDL Doc
    Horneth committed on GitHub Nov 22, 2016
    2116c6b
Commits on Oct 27, 2016
  1. @vdauwera

    Merge pull request #69 from broadinstitute/jt_readme 

    Fix URL in Readme
    vdauwera committed on GitHub Oct 27, 2016
    28d4997
Commits on Oct 25, 2016
  1. @jmthibault79

    correct URL

    jmthibault79 committed Oct 25, 2016
    797aaf8
Commits on Oct 18, 2016
  1. @cjllanwarne

    Merge pull request #66 from broadinstitute/cjl_range_transpose_spec 

    Added definitions of range and transpose
    cjllanwarne committed on GitHub Oct 18, 2016
    830943d
  2. @cjllanwarne

    Added range and transpose functions

    cjllanwarne committed Oct 18, 2016
    f407c31
Commits on Oct 12, 2016
  1. @vdauwera

    Merge pull request #61 from mlin/develop 

    Strike extraneous line from SimpleVariantDiscovery.wdl example (typo probably)
    vdauwera committed on GitHub Oct 12, 2016
    b2e3c09
Commits on Oct 5, 2016
  1. @vivster7

    Merge pull request #60 from broadinstitute/vd_fix_index_cram 

    updated PairedEndSingleSample WDL so indexing a CRAM doesn't talk to a remote server.
    vivster7 committed on GitHub Oct 5, 2016
    4d7954a

  2. add back inputs and options to the archive for 07/20/16

    Vivek Dasari committed Oct 5, 2016
    ef264f9