Combined Analysis of Human, Cynomolgus Monkey and Mouse embryos from blastocyst to gastrula stage
This repository houses the code and objects associated with the analysis of previously published in vitro cultured peri-implantation human embryo datasets.
Folders:
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Realignment_Files: Files used and document with command line functions. Run on ubuntu terminal with python installation. a. Overview file with all information about what was done to realign b. transcript to gene mapping files used for all three species
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Scripts: Run in R on Windows machine a. Human Scripts (R) associated with analysing human datasets split by individal and combined datasets b. Monkey Scripts (R) associated with analysing monkey datasets split by individal and combined datasets c. Mouse Scripts (R) associated with analysing mouse datasets split by individal and combined datasets