Popular repositories Loading

1. WITCH WITCH Public

   WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.

   Python 13 5

2. EMMA EMMA Public

   an ensemble usage of MAFFT-linsi --add on large datasets

   Python 13 2

3. GPU-BLAST-plus GPU-BLAST-plus Public

   A class project for CS508 from UIUC to implement the classic BLAST algorithm using different GPU computing techniques.

   Cuda 9

4. VireTap VireTap Public

   A 03-713 Bioinformatics Practicum project. It focuses on virus transcriptome detection of a given diseased model (i.e. human cancer) using RNA-seq data, and in the future, some further analyses inc…

   Java 6 3

5. CS125Fall20QuizPrep CS125Fall20QuizPrep Public

   A repo where I will post questions that summarize prior week's contents to help students prepare for the next week's quiz.

   6 3

6. TIPP3 TIPP3 Public

   TIPP3 and TIPP3-fast: new phylogeny-based metagenomic profiling and taxonomic identification tool.

   Python 4 1