cBioPortal

Repositories

• cbioportal-frontend

  React Frontend of cBioPortal 🎉

  react mobx cancer-genomics
  TypeScript AGPL-3.0 90 38 0 23 Updated May 25, 2020

• cbioportal

  cBioPortal for Cancer Genomics

  visualization science cancer-genomics precision-medicine
  JavaScript AGPL-3.0 271 321 308 (1 issue needs help) 11 Updated May 25, 2020

• datahub

  A centralized location for storing curated data ready for inclusion in cBioPortal.
  HTML 56 67 167 16 Updated May 23, 2020

• 2020-cbioportal-r-workshop

  Workshop materials for cBioPortal Webinar 5: API & R Client
  0 0 0 0 Updated May 19, 2020

• cbioportal-publisher

  Auto publish cBioPortal modules
  2 0 0 0 Updated May 16, 2020

• gdc-et-pipeline

  GSoC : Spring-batch based system to extract and transform GDC hosted data to suitable cBioPortal file formats.
  Java AGPL-3.0 4 0 9 1 Updated May 15, 2020

• igv.js

  Forked from igvteam/igv.js

  Lightweight html5 version of the Integrative Genomics Viewer
  JavaScript MIT 125 0 0 0 Updated Apr 30, 2020

• oncoprintjs

  OncoPrint visualization
  TypeScript LGPL-3.0 11 21 5 1 Updated Apr 30, 2020

• clinical-timeline

  Use d3-timeline to visualize clinical data
  JavaScript LGPL-3.0 15 17 13 1 Updated Apr 29, 2020

• mutation-mapper
  JavaScript LGPL-3.0 22 12 17 2 Updated Apr 29, 2020

• oncotree
  Java CC-BY-4.0 19 11 23 3 Updated Apr 23, 2020

• clinical-data-dictionary

  Clinical Attribute Web Service for retrieving clinical attribute names and metadata.
  Java 6 2 4 (1 issue needs help) 2 Updated Apr 24, 2020

• cbioportal-manual

  cBioPortal: The Missing Manual
  0 0 0 0 Updated Mar 16, 2020

• datahub-study-curation-tools

  Contains tools used by cBioPortal data curators when preparing data for upload into the datahub repos.
  Python AGPL-3.0 2 3 0 0 Updated Mar 3, 2020

• session-service
  Java 10 2 6 1 Updated Feb 7, 2020

• react-mutation-mapper Archived

  React Lollipop Plot as a standalone library
  TypeScript AGPL-3.0 7 3 3 1 Updated Jan 13, 2020

• fmi-converter

  Foundation Medicine XML file to cBioPortal staging file converter.
  Java AGPL-3.0 3 2 3 0 Updated Jan 9, 2020

• GSoC

  Documentation repository of Google Summer of Code (GSoC) project ideas for cBioPortal and related projects
  18 38 17 0 Updated Jan 2, 2020

• svg2pdf.js

  Forked from dippindots/svg2pdf.js

  A javascript-only SVG to PDF conversion utility that runs in the browser leveraging jsPDF.
  HTML MIT 52 0 0 0 Updated Dec 16, 2019

• icebox

  very low priority issues
  0 0 65 0 Updated Jul 20, 2019

• matlab
  MATLAB 2 0 0 0 Updated Jun 27, 2019

• cgdsr

  R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)
  R LGPL-3.0 15 17 8 0 Updated Jun 25, 2019

• MobxPromise

  Forked from adufilie/MobxPromise

  Provides an observable interface for a computed promise.
  TypeScript MIT 4 1 0 0 Updated Apr 22, 2019

• GSoD

  Description Documentation repository of Google Season of Docs (GSoC) project ideas for cBioPortal and related projects
  0 1 3 0 Updated Apr 4, 2019

• swagger-js-codegen

  Forked from wcandillon/swagger-js-codegen

  A Swagger Codegen for typescript, nodejs & angularjs
  JavaScript Apache-2.0 251 1 0 1 Updated Mar 29, 2019

• spring-social-google

  Forked from spring-social/spring-social-google

  Augmented version of spring-social-google to avoid failure when google+ endpoints are retired
  Java Apache-2.0 167 0 0 0 Updated Feb 4, 2019

• cbioportal-neo4j
  SQLPL AGPL-3.0 1 0 0 0 Updated Jan 7, 2019

• iViz Archived

  cBioPortal Study View
  JavaScript 6 2 54 0 Updated Dec 24, 2018

• cancerhotspots

  Cancer Hotspots
  JavaScript AGPL-3.0 6 5 2 0 Updated Dec 18, 2018

• maven-external-version

  Forked from bdemers/maven-external-version
  Java Apache-2.0 16 0 0 0 Updated Dec 7, 2018