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.github Remove hotfix info from contribution info Jan 9, 2018
.travis Travis add settings.xml for core tests Jun 22, 2016
business v1.15.1-SNAPSHOT Aug 7, 2018
core Validation for entrez gene names that start with a number Aug 15, 2018
db-scripts Add in missing line to update db version schema Aug 20, 2018
docs Update Aug 20, 2018
heroku Fix #2778 frontend.url+frontend.url.runtime prop Aug 17, 2017
model v1.15.1-SNAPSHOT Aug 7, 2018
persistence Fix Clinical Data Count for multi-study multi-sample for patient cases Aug 13, 2018
portal oql description fix Aug 13, 2018
scripts v1.15.1-SNAPSHOT Aug 7, 2018
security Caches needed data for security so mybatis cache can be disabled. Aug 9, 2018
service replaced an unsafe remove method with removeAll (fix #4617) Aug 10, 2018
src/main Remove unnecessary line Aug 2, 2018
test/end-to-end Update references to patient/ Jul 27, 2018
web Check for empty session service Aug 14, 2018
.codeclimate.yml Update .codeclimate.yml Jul 8, 2016
.editorconfig Solve .editorconfig auto-formating issue; This closes issue #757 Jan 22, 2016
.gitignore Add logging to all new API methods in all layers using AspectJ Nov 4, 2017
.jshintrc Refactor clinical attributes from JS to CSS Jun 29, 2016
.travis.yml Use new external db for travis & heroku Apr 11, 2017 Remove hotfix info from contribution info Jan 9, 2018
Dockerfile removed legacy dependencies Sep 18, 2017
LICENSE merged with master Apr 2, 2015
OPEN-SOURCE-DOCUMENTATION changed distance function to push samples with no data to outside Jun 23, 2017 Add cbioportal support Mar 14, 2017
app.json Fix #2778 frontend.url+frontend.url.runtime prop Aug 17, 2017
pom.xml Merge pull request #3012 from angelicaochoa/mut-event-keyword-size-in… Aug 14, 2018
requirements.txt Add tests for python validator to travis CI Jun 16, 2016


The cBioPortal for Cancer Genomics provides visualization, analysis, and download of large-scale cancer genomics data sets. The cBioPortal is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License, version 3, as published by the Free Software Foundation.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more details.

A public instance of cBioPortal ( is hosted and maintained by Memorial Sloan Kettering Cancer Center. It provides access to data by The Cancer Genome Atlas as well as many carefully curated published data sets. The cBioPortal software can be used to for local instances that provide access to private data.

If you would like to know how to setup a private instance of the portal and/or get set up for developing, see the documentation. For details on contributing code changes via pull requests, see our Contributing document.

If you are interested in coordinating the development of new features, please contact

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