California Academy of Sciences, Institute for Biodiversity Science & Sustainability

World Catalog of Ants

This is a repository for scripts and files associated with the Northern Spotted Owl (<i>Strix occidentalis caurina</i>) genome project.

Modified version of hyRAD, the protocol for hybridization capture using restriction site associated DNA (RAD) markers to create probes

Ansible installer for genomics programs on Centos 7

This tool calculates scaffold statistics after applying several scaffold length cutoffs

A script to calculate contig and scaffold N50 on a FASTA file of nucleotide sequence data

dupchk is a tool to check a sequence file in FASTA or FASTQ format for duplicate sequences

ScaffSplitN50s is a set of scripts to calculate contig N50s with different N block lengths

excerptByIDs is a tool to output records in a fastq or a pair of fastq files matching a list of IDs

blatq is a modified version of BLAT—The BLAST-Like Alignment Tool to allow direct use of fastq files