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SpringSaLaD is a particle-based, spatial, stochastic biochemical simulation program.

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SpringSaLaD

Description

This is a Java implementation of the SpringSaLaD algorithm, which is a spatially resolved, stochastic simulation algorithm for biochemical systems. The algorithm is based on the Langevin equation, and is implemented in a particle-based framework.

The underlying solver is found at https://github.com/cam-center/LangevinNoVis01.

For more information or to download SpringSaLaD

Website: https://vcell.org/ssalad

The algorithm is described in "SpringSaLaD: A Spatial, Particle-Based Biochemical Simulation Platform with Excluded Volume" by Paul J Michalski and Leslie M Loew.

Download Latest Version - 2.3.2

Building SpringSaLaD

Requirements

  • Java 17
  • Maven
mvn clean install dependency:copy-dependencies

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SpringSaLaD is a particle-based, spatial, stochastic biochemical simulation program.

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