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Devel #159

Merged
merged 38 commits into from
May 10, 2019
Merged

Devel #159

merged 38 commits into from
May 10, 2019

Commits on Apr 29, 2019

  1. Merge pull request campbio#146 from zhewa/master 

     add asList = FALSE argument to selectBestModel
    @zhewa
    zhewa committed Apr 29, 2019
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Commits on Apr 30, 2019

  1. fix lints

    @zhewa
    zhewa committed Apr 30, 2019
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  2. Merge pull request campbio#150 from zhewa/master 

    fix lints
    @zhewa
    zhewa committed Apr 30, 2019
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Commits on May 2, 2019

  1. bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch

    @nturaga
    nturaga committed May 2, 2019
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  2. bump x.y.z versions to odd y after creation of RELEASE_3_9 branch

    @nturaga
    nturaga committed May 2, 2019
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  3. fix .validateCounts bug

    @zhewa
    zhewa committed May 2, 2019
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  4. Merge pull request campbio#153 from zhewa/master 

    fix .validateCounts bug
    @zhewa
    zhewa committed May 2, 2019
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Commits on May 4, 2019

  1. Update README.md

    @zhewa
    zhewa committed May 4, 2019
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  2. Update README.md

    @zhewa
    zhewa committed May 4, 2019
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Commits on May 7, 2019

  1. Fix normalization in moduleHeatmap(). Fixes campbio#154

    @definitelysean
    definitelysean committed May 7, 2019
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  2. Update StateHeatmap.R 

    Flip the Boolean logic on determining whether the param was NA or not... lol.
    @definitelysean
    definitelysean committed May 7, 2019
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  3. Updating documentation for new param change. campbio#154

    @definitelysean
    definitelysean committed May 7, 2019
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  4. Fixing broken unit tests.

    @definitelysean
    definitelysean committed May 7, 2019
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  5. Merge pull request campbio#155 from definitelysean/master 

    normalizeCounts Parameter for moduleHeatmap
    @zhewa
    zhewa committed May 7, 2019
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Commits on May 8, 2019

  1. fix lints

    @zhewa
    zhewa committed May 8, 2019
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  2. add with_seed to celda_C.R

    @zhewa
    zhewa committed May 8, 2019
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  3. add with_seed to celda_CG.R

    @zhewa
    zhewa committed May 8, 2019
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Commits on May 9, 2019

  1. add with_seed to celda_G.R

    @zhewa
    zhewa committed May 9, 2019
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  2. add with_seed to decon.R

    @zhewa
    zhewa committed May 9, 2019
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  3. add with_seed to model_performance.R

    @zhewa
    zhewa committed May 9, 2019
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  4. update documentation

    @zhewa
    zhewa committed May 9, 2019
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  5. add withr to DESCRIPTION

    @zhewa
    zhewa committed May 9, 2019
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  6. fix celdaTsne for celda_C bug

    @zhewa
    zhewa committed May 9, 2019
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  7. fix beta in decon.R

    @zhewa
    zhewa committed May 9, 2019
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  8. celdaCCim -> celdaCSim

    @zhewa
    zhewa committed May 9, 2019
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  9. add unit tests for seed setting

    @zhewa
    zhewa committed May 9, 2019
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  10. update vignettes

    @zhewa
    zhewa committed May 9, 2019
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  11. fix lints

    @zhewa
    zhewa committed May 9, 2019
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  12. fix lint

    @zhewa
    zhewa committed May 9, 2019
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  13. Merge pull request campbio#157 from zhewa/silentSeeds 

    Silent seeds
    @zhewa
    zhewa committed May 9, 2019
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  14. Merge branch 'RELEASE_3_9' of git.bioconductor.org:packages/celda int… 

    …o RELEASE_3_9
    @zhewa
    zhewa committed May 9, 2019
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  15. update NEWS

    @zhewa
    zhewa committed May 9, 2019
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  16. Merge branch 'silentSeeds' of https://github.com/campbio/celda into R… 

    …ELEASE_3_9
    @zhewa
    zhewa committed May 9, 2019
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  17. Merge pull request campbio#158 from zhewa/RELEASE_3_9 

    Release 3 9
    @zhewa
    zhewa committed May 9, 2019
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Commits on May 10, 2019

  1. Merge branch 'RELEASE_3_9' of https://github.com/campbio/celda into d… 

    …evel
    @zhewa
    zhewa committed May 10, 2019
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  2. update decon.R

    @zhewa
    zhewa committed May 10, 2019
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  3. Merge branch 'master' of git.bioconductor.org:packages/celda into devel

    @zhewa
    zhewa committed May 10, 2019
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  4. update DESCRIPTION and NEWS

    @zhewa
    zhewa committed May 10, 2019
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