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Core tools required for running Canlab Matlab toolboxes. The heart of this toolbox is object-oriented tools that enable interactive analysis of neuroimaging data and simple scripts using high-level commands tailored to neuroimaging analysis.
Brain signature patterns, atlases of regions, and meta-analysis masks for neuroimaging data analysis.
Single-level and multi-level mediation analyses for any kind of data, with bootstrap-based significance testing. Neuroimaging-oriented functions allow for mediation effect parametric mapping (mapping of mediation effects across the brain) and multivariate mediation.
How-to examples and a batch pipeline for second-level neuroimaging analysis. Batch scripts and examples publish HTML files with code and output.
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
A compilation of useful scripts commonly used in canlab
Publicly available canlab experimental paradigms
Containerizing the Canlab code
Coordinate-based meta-analysis for neuroimaging using Multilevel Kernel Density Analysis and various other statistical tools (chi-square, clustering, correspondence analysis, parcellation)
All of the preprocessing code
Wager lab fork of the Apkarian group's ABLM toolbox.
Utility functions for working with DICOM and BIDS neuroimaging data
MATLAB code for identifying generalizable brain representations of pain, cognitive control, and negative emotion
A collection of code for the r21stress project
Version of SPM8 with the Canlab's internal modifications
Robust regression toolbox for neuroimaging data
Public repository for shared CANlab datasets (behavioral, physio)
E-Basic function to integrate a Labjack USB I/O device with E-Prime 2.0
Martin Lindquist's dynamic correlation toolboxes. Designed for fMRI analysis, useful for other applications too.
A tutorial for git and slurm
A python script to generate and submit Slurm jobs
The matlab functions that wani is working on, but not on the wagerlab repository
A few routines to perform "auto reorient" in SPM