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Added test data directory for pick_otus.py.

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1 parent b2da9be commit 729af4f52eeac848c82f82ac94d587a80b7bd351 @jairideout jairideout committed Oct 18, 2012
Showing with 11,073 additions and 0 deletions.
  1. +13 −0 pick_otus/blast_picked_otus/seqs_otus.log
  2. +2 −0 pick_otus/blast_picked_otus/seqs_otus.txt
  3. +13 −0 pick_otus/blast_picked_otus_90_percent/seqs_otus.log
  4. +19 −0 pick_otus/blast_picked_otus_90_percent/seqs_otus.txt
  5. +12 −0 pick_otus/blast_picked_otus_prebuilt_db/seqs_otus.log
  6. +2 −0 pick_otus/blast_picked_otus_prebuilt_db/seqs_otus.txt
  7. +7 −0 pick_otus/cdhit_picked_otus/seqs_otus.log
  8. +98 −0 pick_otus/cdhit_picked_otus/seqs_otus.txt
  9. +8 −0 pick_otus/cdhit_picked_otus_filter/seqs_otus.log
  10. +87 −0 pick_otus/cdhit_picked_otus_filter/seqs_otus.txt
  11. +8 −0 pick_otus/cdhit_picked_otus_trie_prefilter/seqs_otus.log
  12. +97 −0 pick_otus/cdhit_picked_otus_trie_prefilter/seqs_otus.txt
  13. +5 −0 pick_otus/mothur_picked_otus/seqs.aligned_otus.log
  14. +104 −0 pick_otus/mothur_picked_otus/seqs.aligned_otus.txt
  15. +5 −0 pick_otus/mothur_picked_otus_90_percent/seqs.aligned_otus.log
  16. +75 −0 pick_otus/mothur_picked_otus_90_percent/seqs.aligned_otus.txt
  17. +5 −0 pick_otus/mothur_picked_otus_nn/seqs.aligned_otus.log
  18. +100 −0 pick_otus/mothur_picked_otus_nn/seqs.aligned_otus.txt
  19. +208 −0 pick_otus/picked_otus_90_percent_rev/seqs_clusters.uc
  20. +19 −0 pick_otus/picked_otus_90_percent_rev/seqs_otus.log
  21. +64 −0 pick_otus/picked_otus_90_percent_rev/seqs_otus.txt
  22. +240 −0 pick_otus/picked_otus_default/seqs_clusters.uc
  23. +19 −0 pick_otus/picked_otus_default/seqs_otus.log
  24. +96 −0 pick_otus/picked_otus_default/seqs_otus.txt
  25. +7 −0 pick_otus/prefix_suffix_picked_otus/seqs_otus.log
  26. +120 −0 pick_otus/prefix_suffix_picked_otus/seqs_otus.txt
  27. +300 −0 pick_otus/refseqs.fasta
  28. +6 −0 pick_otus/refseqs.fasta.log
  29. BIN pick_otus/refseqs.fasta.nhr
  30. BIN pick_otus/refseqs.fasta.nin
  31. +150 −0 pick_otus/refseqs.fasta.nsd
  32. BIN pick_otus/refseqs.fasta.nsi
  33. BIN pick_otus/refseqs.fasta.nsq
  34. +306 −0 pick_otus/seqs.aligned.fna
  35. +306 −0 pick_otus/seqs.fna
  36. +240 −0 pick_otus/uclust_ref_picked_otus/seqs_clusters.uc
  37. 0 pick_otus/uclust_ref_picked_otus/seqs_failures.txt
  38. +25 −0 pick_otus/uclust_ref_picked_otus/seqs_otus.log
  39. +96 −0 pick_otus/uclust_ref_picked_otus/seqs_otus.txt
  40. +557 −0 pick_otus/usearch_qf_results/abundance_sorted.fasta
  41. +107 −0 pick_otus/usearch_qf_results/abundance_sorted_minsize_2.fasta
  42. +76 −0 pick_otus/usearch_qf_results/assign_reads_to_otus.log
  43. +161 −0 pick_otus/usearch_qf_results/assign_reads_to_otus.uc
  44. +419 −0 pick_otus/usearch_qf_results/clustered_error_corrected.fasta
  45. +107 −0 pick_otus/usearch_qf_results/clustered_seqs.fasta
  46. +58 −0 pick_otus/usearch_qf_results/clustered_seqs_post_chimera.uc
  47. +192 −0 pick_otus/usearch_qf_results/combined_non_chimeras.fasta
  48. +30 −0 pick_otus/usearch_qf_results/de_novo_chimeras.fasta
  49. +389 −0 pick_otus/usearch_qf_results/de_novo_non_chimeras.fasta
  50. +73 −0 pick_otus/usearch_qf_results/derep.log
  51. +292 −0 pick_otus/usearch_qf_results/derep.uc
  52. +557 −0 pick_otus/usearch_qf_results/dereplicated_seqs.fasta
  53. +50 −0 pick_otus/usearch_qf_results/enumerated_otus.fasta
  54. +238 −0 pick_otus/usearch_qf_results/err_corrected_clusters.uc
  55. +306 −0 pick_otus/usearch_qf_results/len_sorted.fasta
  56. +15 −0 pick_otus/usearch_qf_results/minsize_0_abundance_sort.log
  57. +15 −0 pick_otus/usearch_qf_results/minsize_2_abundance_sort.log
  58. +99 −0 pick_otus/usearch_qf_results/refdb.uc
  59. +18 −0 pick_otus/usearch_qf_results/reference_chimeras.fasta
  60. +401 −0 pick_otus/usearch_qf_results/reference_non_chimeras.fasta
  61. +31 −0 pick_otus/usearch_qf_results/seqs_otus.log
  62. +25 −0 pick_otus/usearch_qf_results/seqs_otus.txt
  63. +17 −0 pick_otus/usearch_qf_results/sortlen.log
  64. +65 −0 pick_otus/usearch_qf_results/uchime_de_novo_chimera_filtering.log
  65. +31 −0 pick_otus/usearch_qf_results/uchime_reference_chimera_filtering.log
  66. +75 −0 pick_otus/usearch_qf_results/usearch_cluster_err_corrected.log
  67. +72 −0 pick_otus/usearch_qf_results/usearch_cluster_seqs.log
  68. +557 −0 pick_otus/usearch_qf_results_no_ref_chim_detection/abundance_sorted.fasta
  69. +107 −0 pick_otus/usearch_qf_results_no_ref_chim_detection/abundance_sorted_minsize_2.fasta
  70. +76 −0 pick_otus/usearch_qf_results_no_ref_chim_detection/assign_reads_to_otus.log
  71. +161 −0 pick_otus/usearch_qf_results_no_ref_chim_detection/assign_reads_to_otus.uc
  72. +419 −0 pick_otus/usearch_qf_results_no_ref_chim_detection/clustered_error_corrected.fasta
  73. +107 −0 pick_otus/usearch_qf_results_no_ref_chim_detection/clustered_seqs.fasta
  74. +58 −0 pick_otus/usearch_qf_results_no_ref_chim_detection/clustered_seqs_post_chimera.uc
  75. +30 −0 pick_otus/usearch_qf_results_no_ref_chim_detection/de_novo_chimeras.fasta
  76. +389 −0 pick_otus/usearch_qf_results_no_ref_chim_detection/de_novo_non_chimeras.fasta
  77. +73 −0 pick_otus/usearch_qf_results_no_ref_chim_detection/derep.log
  78. +292 −0 pick_otus/usearch_qf_results_no_ref_chim_detection/derep.uc
  79. +557 −0 pick_otus/usearch_qf_results_no_ref_chim_detection/dereplicated_seqs.fasta
  80. +50 −0 pick_otus/usearch_qf_results_no_ref_chim_detection/enumerated_otus.fasta
  81. +238 −0 pick_otus/usearch_qf_results_no_ref_chim_detection/err_corrected_clusters.uc
  82. +306 −0 pick_otus/usearch_qf_results_no_ref_chim_detection/len_sorted.fasta
  83. +15 −0 pick_otus/usearch_qf_results_no_ref_chim_detection/minsize_0_abundance_sort.log
  84. +15 −0 pick_otus/usearch_qf_results_no_ref_chim_detection/minsize_2_abundance_sort.log
  85. +31 −0 pick_otus/usearch_qf_results_no_ref_chim_detection/seqs_otus.log
  86. +25 −0 pick_otus/usearch_qf_results_no_ref_chim_detection/seqs_otus.txt
  87. +17 −0 pick_otus/usearch_qf_results_no_ref_chim_detection/sortlen.log
  88. +65 −0 pick_otus/usearch_qf_results_no_ref_chim_detection/uchime_de_novo_chimera_filtering.log
  89. +75 −0 pick_otus/usearch_qf_results_no_ref_chim_detection/usearch_cluster_err_corrected.log
  90. +72 −0 pick_otus/usearch_qf_results_no_ref_chim_detection/usearch_cluster_seqs.log
@@ -0,0 +1,13 @@
+OtuPicker parameters:
+Similarity:0.97
+blast_program:blastn
+is_protein:False
+max_e_value:1e-10
+min_aligned_percent:0.5
+seqs_per_blast_run:1000
+Reference seqs fp (to build blast db): /Users/jrideout/dev/qiime_test_data/pick_otus/refseqs.fasta
+Blast database: /tmp/refseqs.fasta
+Num OTUs: 2
+Result path: blast_picked_otus//seqs_otus.txt
+Num failures: 149
+Failures: PC.354_296 PC.354_299 PC.354_3 PC.354_303 PC.354_308 PC.354_334 PC.354_344 PC.354_346 PC.354_358 PC.354_359 PC.354_370 PC.354_378 PC.354_387 PC.354_411 PC.354_412 PC.354_458 PC.355_291 PC.355_300 PC.355_301 PC.355_324 PC.355_327 PC.355_328 PC.355_353 PC.355_361 PC.355_372 PC.355_374 PC.355_375 PC.355_382 PC.355_384 PC.355_385 PC.355_399 PC.355_403 PC.355_413 PC.355_459 PC.355_460 PC.355_544 PC.355_545 PC.355_546 PC.356_295 PC.356_325 PC.356_336 PC.356_341 PC.356_347 PC.356_355 PC.356_363 PC.356_406 PC.356_410 PC.356_449 PC.356_451 PC.356_453 PC.356_456 PC.356_542 PC.356_543 PC.481_292 PC.481_304 PC.481_307 PC.481_317 PC.481_321 PC.481_322 PC.481_326 PC.481_329 PC.481_338 PC.481_357 PC.481_371 PC.481_377 PC.481_397 PC.481_418 PC.481_455 PC.593_313 PC.593_314 PC.593_342 PC.593_343 PC.593_369 PC.593_400 PC.593_408 PC.593_414 PC.593_450 PC.593_454 PC.593_547 PC.607_297 PC.607_302 PC.607_312 PC.607_323 PC.607_330 PC.607_332 PC.607_348 PC.607_352 PC.607_356 PC.607_360 PC.607_365 PC.607_380 PC.607_391 PC.607_395 PC.607_401 PC.607_405 PC.607_416 PC.607_452 PC.607_457 PC.607_541 PC.634_1 PC.634_2 PC.634_60 PC.635_305 PC.635_306 PC.635_315 PC.635_316 PC.635_319 PC.635_320 PC.635_333 PC.635_345 PC.635_350 PC.635_364 PC.635_367 PC.635_368 PC.635_381 PC.635_383 PC.635_386 PC.635_388 PC.635_390 PC.635_394 PC.635_398 PC.635_404 PC.635_461 PC.636_294 PC.636_298 PC.636_309 PC.636_310 PC.636_311 PC.636_318 PC.636_331 PC.636_335 PC.636_337 PC.636_339 PC.636_340 PC.636_349 PC.636_351 PC.636_354 PC.636_366 PC.636_373 PC.636_376 PC.636_389 PC.636_392 PC.636_396 PC.636_402 PC.636_407 PC.636_409 PC.636_415 PC.636_417 PC.636_61
@@ -0,0 +1,2 @@
+269328 PC.593_362
+192712 PC.593_393 PC.636_379 PC.355_293
@@ -0,0 +1,13 @@
+OtuPicker parameters:
+Similarity:0.9
+blast_program:blastn
+is_protein:False
+max_e_value:1e-30
+min_aligned_percent:0.5
+seqs_per_blast_run:1000
+Reference seqs fp (to build blast db): /Users/jrideout/dev/qiime_test_data/pick_otus/refseqs.fasta
+Blast database: /tmp/refseqs.fasta
+Num OTUs: 19
+Result path: blast_picked_otus_90_percent//seqs_otus.txt
+Num failures: 84
+Failures: PC.354_308 PC.354_334 PC.354_344 PC.354_358 PC.354_359 PC.354_370 PC.354_378 PC.354_411 PC.354_458 PC.355_301 PC.355_324 PC.355_327 PC.355_361 PC.355_372 PC.355_375 PC.355_399 PC.355_459 PC.355_460 PC.355_546 PC.356_295 PC.356_325 PC.356_336 PC.356_347 PC.356_449 PC.356_451 PC.356_543 PC.481_292 PC.481_321 PC.481_326 PC.481_329 PC.481_338 PC.481_418 PC.481_455 PC.593_313 PC.593_314 PC.593_342 PC.593_343 PC.593_450 PC.607_297 PC.607_302 PC.607_312 PC.607_323 PC.607_332 PC.607_348 PC.607_352 PC.607_356 PC.607_365 PC.607_380 PC.607_405 PC.607_416 PC.607_452 PC.607_457 PC.634_2 PC.634_60 PC.635_305 PC.635_306 PC.635_316 PC.635_345 PC.635_364 PC.635_368 PC.635_381 PC.635_386 PC.635_388 PC.635_394 PC.635_398 PC.636_294 PC.636_298 PC.636_309 PC.636_310 PC.636_318 PC.636_331 PC.636_337 PC.636_339 PC.636_340 PC.636_349 PC.636_354 PC.636_366 PC.636_373 PC.636_376 PC.636_407 PC.636_409 PC.636_415 PC.636_417 PC.636_61
@@ -0,0 +1,19 @@
+269328 PC.355_403 PC.593_362 PC.356_406 PC.356_363
+102538 PC.593_414 PC.356_410
+150661 PC.354_346 PC.634_1 PC.354_412 PC.481_304 PC.354_3
+560842 PC.635_404 PC.636_402 PC.635_319
+91312 PC.607_541
+260161 PC.356_355 PC.354_303 PC.356_341 PC.356_542 PC.355_544
+263873 PC.593_393 PC.481_371 PC.354_299 PC.593_369 PC.636_379 PC.593_454 PC.593_547
+153082 PC.636_311
+192712 PC.355_293 PC.635_350 PC.636_335
+578310 PC.607_391
+289151 PC.635_367 PC.636_351
+310327 PC.355_300
+572646 PC.607_330
+155763 PC.355_545
+312796 PC.636_392 PC.635_461 PC.635_333 PC.607_401
+184895 PC.636_389 PC.355_413 PC.593_400 PC.354_296 PC.636_396 PC.355_291 PC.481_322 PC.355_328 PC.481_317 PC.635_320 PC.355_384 PC.355_385 PC.355_382 PC.607_395
+193448 PC.355_374 PC.593_408 PC.355_353 PC.354_387 PC.607_360 PC.635_315 PC.481_307 PC.356_453 PC.635_383
+304097 PC.481_377 PC.481_357 PC.356_456 PC.481_397
+224436 PC.635_390
@@ -0,0 +1,12 @@
+OtuPicker parameters:
+Similarity:0.97
+blast_program:blastn
+is_protein:False
+max_e_value:1e-10
+min_aligned_percent:0.5
+seqs_per_blast_run:1000
+Blast database: refseqs.fasta
+Num OTUs: 2
+Result path: blast_picked_otus_prebuilt_db//seqs_otus.txt
+Num failures: 149
+Failures: PC.354_296 PC.354_299 PC.354_3 PC.354_303 PC.354_308 PC.354_334 PC.354_344 PC.354_346 PC.354_358 PC.354_359 PC.354_370 PC.354_378 PC.354_387 PC.354_411 PC.354_412 PC.354_458 PC.355_291 PC.355_300 PC.355_301 PC.355_324 PC.355_327 PC.355_328 PC.355_353 PC.355_361 PC.355_372 PC.355_374 PC.355_375 PC.355_382 PC.355_384 PC.355_385 PC.355_399 PC.355_403 PC.355_413 PC.355_459 PC.355_460 PC.355_544 PC.355_545 PC.355_546 PC.356_295 PC.356_325 PC.356_336 PC.356_341 PC.356_347 PC.356_355 PC.356_363 PC.356_406 PC.356_410 PC.356_449 PC.356_451 PC.356_453 PC.356_456 PC.356_542 PC.356_543 PC.481_292 PC.481_304 PC.481_307 PC.481_317 PC.481_321 PC.481_322 PC.481_326 PC.481_329 PC.481_338 PC.481_357 PC.481_371 PC.481_377 PC.481_397 PC.481_418 PC.481_455 PC.593_313 PC.593_314 PC.593_342 PC.593_343 PC.593_369 PC.593_400 PC.593_408 PC.593_414 PC.593_450 PC.593_454 PC.593_547 PC.607_297 PC.607_302 PC.607_312 PC.607_323 PC.607_330 PC.607_332 PC.607_348 PC.607_352 PC.607_356 PC.607_360 PC.607_365 PC.607_380 PC.607_391 PC.607_395 PC.607_401 PC.607_405 PC.607_416 PC.607_452 PC.607_457 PC.607_541 PC.634_1 PC.634_2 PC.634_60 PC.635_305 PC.635_306 PC.635_315 PC.635_316 PC.635_319 PC.635_320 PC.635_333 PC.635_345 PC.635_350 PC.635_364 PC.635_367 PC.635_368 PC.635_381 PC.635_383 PC.635_386 PC.635_388 PC.635_390 PC.635_394 PC.635_398 PC.635_404 PC.635_461 PC.636_294 PC.636_298 PC.636_309 PC.636_310 PC.636_311 PC.636_318 PC.636_331 PC.636_335 PC.636_337 PC.636_339 PC.636_340 PC.636_349 PC.636_351 PC.636_354 PC.636_366 PC.636_373 PC.636_376 PC.636_389 PC.636_392 PC.636_396 PC.636_402 PC.636_407 PC.636_409 PC.636_415 PC.636_417 PC.636_61
@@ -0,0 +1,2 @@
+269328 PC.593_362
+192712 PC.593_393 PC.636_379 PC.355_293
@@ -0,0 +1,7 @@
+CdHitOtuPicker parameters:
+-M:400
+Algorithm:cdhit: "longest-sequence-first list removal algorithm"
+Application:cdhit
+Similarity:0.97
+No prefix-based prefiltering.
+Result path: cdhit_picked_otus//seqs_otus.txt
@@ -0,0 +1,98 @@
+0 PC.481_321
+1 PC.356_295
+2 PC.635_398
+3 PC.636_298 PC.636_407
+4 PC.635_315
+5 PC.636_379 PC.593_393
+6 PC.481_418 PC.607_312
+7 PC.636_310 PC.636_376 PC.636_415
+8 PC.635_306 PC.636_331 PC.636_339 PC.481_292 PC.607_348 PC.354_359
+9 PC.607_302
+10 PC.636_294 PC.636_337
+11 PC.356_347
+12 PC.593_547
+13 PC.635_381
+14 PC.636_389
+15 PC.355_300 PC.355_327
+16 PC.634_2
+17 PC.635_305 PC.635_388
+18 PC.355_324
+19 PC.635_383 PC.355_372 PC.355_385 PC.481_322 PC.354_344
+20 PC.355_413
+21 PC.607_365
+22 PC.356_449
+23 PC.635_386 PC.636_417
+24 PC.355_328 PC.607_323 PC.607_352
+25 PC.355_459
+26 PC.593_362
+27 PC.481_357 PC.481_397
+28 PC.634_60
+29 PC.635_316 PC.635_345
+30 PC.636_309 PC.636_318 PC.636_349 PC.636_354 PC.636_373 PC.636_409 PC.481_326
+31 PC.607_457 PC.593_313 PC.607_297 PC.607_332 PC.607_380
+32 PC.635_368
+33 PC.636_396 PC.355_384
+34 PC.355_301
+35 PC.355_460
+36 PC.481_338
+37 PC.636_340
+38 PC.355_399
+39 PC.355_544
+40 PC.355_546
+41 PC.356_341
+42 PC.481_329
+43 PC.354_296
+44 PC.354_370 PC.354_308
+45 PC.354_378 PC.354_411 PC.354_458 PC.354_334 PC.354_358
+46 PC.354_303 PC.356_355 PC.356_542
+47 PC.356_325
+48 PC.593_314 PC.593_450
+49 PC.593_369 PC.593_454
+50 PC.607_356 PC.607_416
+51 PC.607_391
+52 PC.636_335
+53 PC.635_319 PC.635_404 PC.636_402
+54 PC.635_320
+55 PC.355_375
+56 PC.356_336
+57 PC.356_451
+58 PC.481_377
+59 PC.607_330
+60 PC.607_395
+61 PC.355_403 PC.356_406
+62 PC.607_360
+63 PC.481_371
+64 PC.607_405
+65 PC.355_293
+66 PC.607_452
+67 PC.635_394
+68 PC.355_382 PC.481_317
+69 PC.354_387 PC.355_353 PC.355_374 PC.356_453 PC.481_307 PC.593_408
+70 PC.356_456
+71 PC.354_299
+72 PC.635_350
+73 PC.635_364
+74 PC.356_363
+75 PC.636_351
+76 PC.481_455
+77 PC.593_414
+78 PC.636_61
+79 PC.355_291
+80 PC.481_304
+81 PC.636_311
+82 PC.355_545
+83 PC.635_333
+84 PC.635_461
+85 PC.636_392
+86 PC.593_342
+87 PC.593_343
+88 PC.607_401
+89 PC.634_1
+90 PC.635_390
+91 PC.607_541
+92 PC.593_400
+93 PC.354_412 PC.354_3 PC.354_346
+94 PC.355_361
+95 PC.356_410
+96 PC.635_367
+97 PC.636_366 PC.356_543
@@ -0,0 +1,8 @@
+CdHitOtuPicker parameters:
+-M:400
+Algorithm:cdhit: "longest-sequence-first list removal algorithm"
+Application:cdhit
+Similarity:0.97
+Prefix-based prefiltering, prefix length: 100
+Prefix-based prefiltering, post-filter num seqs: 104
+Result path: cdhit_picked_otus_filter//seqs_otus.txt
@@ -0,0 +1,87 @@
+0 PC.481_321
+1 PC.356_295
+2 PC.636_298 PC.636_376 PC.636_407 PC.636_415
+3 PC.635_398
+4 PC.635_315
+5 PC.636_379 PC.635_386 PC.593_393 PC.593_547
+6 PC.481_418 PC.607_312
+7 PC.481_292 PC.635_306 PC.636_339 PC.607_348 PC.354_359 PC.636_331
+8 PC.607_302 PC.356_363
+9 PC.636_310
+10 PC.636_294 PC.355_293 PC.636_335 PC.636_337 PC.593_362 PC.593_369 PC.593_454
+11 PC.356_347
+12 PC.355_300 PC.355_327
+13 PC.635_381
+14 PC.636_389
+15 PC.354_344 PC.355_372 PC.355_385 PC.481_322 PC.635_383
+16 PC.355_413
+17 PC.607_365
+18 PC.634_2
+19 PC.635_305 PC.635_388
+20 PC.355_324
+21 PC.607_323 PC.607_352 PC.356_449
+22 PC.636_417
+23 PC.355_328
+24 PC.355_459
+25 PC.481_357 PC.481_397
+26 PC.634_60
+27 PC.635_316 PC.635_345
+28 PC.636_309 PC.636_318 PC.481_326 PC.636_354 PC.636_373 PC.355_375 PC.636_409 PC.636_349
+29 PC.355_460
+30 PC.481_338
+31 PC.593_313 PC.607_297 PC.607_380 PC.607_457 PC.607_332
+32 PC.635_368
+33 PC.355_291 PC.355_301 PC.481_307 PC.355_353 PC.354_387 PC.356_453
+34 PC.355_384 PC.636_396
+35 PC.355_399
+36 PC.355_544
+37 PC.355_546
+38 PC.356_341
+39 PC.481_329
+40 PC.636_340
+41 PC.354_296
+42 PC.354_303 PC.356_355 PC.356_542
+43 PC.356_325
+44 PC.354_308 PC.354_334 PC.354_358 PC.354_378 PC.354_411 PC.354_370
+45 PC.593_314 PC.593_450
+46 PC.607_356 PC.607_416
+47 PC.607_391
+48 PC.635_319 PC.636_402 PC.635_404
+49 PC.356_336
+50 PC.356_451
+51 PC.481_377
+52 PC.607_330
+53 PC.607_395
+54 PC.354_458
+55 PC.635_320
+56 PC.354_299 PC.355_403 PC.356_406
+57 PC.607_360
+58 PC.481_371
+59 PC.607_405
+60 PC.607_452
+61 PC.355_382 PC.481_317
+62 PC.356_456
+63 PC.635_394
+64 PC.635_350
+65 PC.635_364
+66 PC.355_374 PC.593_408
+67 PC.481_455
+68 PC.593_414
+69 PC.636_351
+70 PC.636_61
+71 PC.481_304
+72 PC.355_545
+73 PC.636_311
+74 PC.593_342
+75 PC.593_343
+76 PC.607_401
+77 PC.635_333
+78 PC.635_461
+79 PC.636_392
+80 PC.634_1
+81 PC.635_390
+82 PC.593_400
+83 PC.607_541
+84 PC.354_3 PC.354_346 PC.354_412
+85 PC.355_361 PC.636_366 PC.356_543
+86 PC.635_367 PC.356_410
@@ -0,0 +1,8 @@
+CdHitOtuPicker parameters:
+-M:400
+Algorithm:cdhit: "longest-sequence-first list removal algorithm"
+Application:cdhit
+Similarity:0.97
+Trie-based prefiltering
+Trie-based prefiltering, post-filter num seqs: 131
+Result path: cdhit_picked_otus_trie_prefilter//seqs_otus.txt
@@ -0,0 +1,97 @@
+0 PC.481_321
+1 PC.356_295
+2 PC.635_398
+3 PC.636_376 PC.636_415 PC.636_298 PC.636_407
+4 PC.635_315
+5 PC.636_379 PC.593_393
+6 PC.481_418 PC.607_312
+7 PC.636_310
+8 PC.636_331 PC.354_359 PC.636_339 PC.607_348 PC.481_292 PC.635_306
+9 PC.607_302
+10 PC.636_294 PC.636_337
+11 PC.356_347
+12 PC.593_547
+13 PC.635_381
+14 PC.636_389
+15 PC.355_300 PC.355_327
+16 PC.635_388 PC.635_305
+17 PC.355_324
+18 PC.635_383 PC.355_372 PC.355_385 PC.481_322 PC.354_344
+19 PC.355_413
+20 PC.607_365
+21 PC.634_2
+22 PC.356_449
+23 PC.635_386 PC.636_417
+24 PC.355_328 PC.607_352 PC.607_323
+25 PC.355_459
+26 PC.593_362
+27 PC.481_357 PC.481_397
+28 PC.636_373 PC.636_409 PC.481_326 PC.636_309 PC.636_354 PC.636_318 PC.636_349
+29 PC.634_60
+30 PC.635_316 PC.635_345
+31 PC.635_368
+32 PC.355_384 PC.636_396
+33 PC.355_301
+34 PC.355_460
+35 PC.481_338
+36 PC.593_313 PC.607_380 PC.607_457 PC.607_297 PC.607_332
+37 PC.636_340
+38 PC.355_399
+39 PC.355_544
+40 PC.355_546
+41 PC.356_341
+42 PC.481_329
+43 PC.354_296
+44 PC.354_411 PC.354_458 PC.354_308 PC.354_358 PC.354_334 PC.354_370 PC.354_378
+45 PC.356_355 PC.356_542 PC.354_303
+46 PC.356_325
+47 PC.593_314 PC.593_450
+48 PC.593_369 PC.593_454
+49 PC.607_356 PC.607_416
+50 PC.607_391
+51 PC.636_335
+52 PC.635_319 PC.635_404 PC.636_402
+53 PC.355_375
+54 PC.356_336
+55 PC.356_451
+56 PC.481_377
+57 PC.607_330
+58 PC.607_395
+59 PC.635_320
+60 PC.355_403 PC.356_406
+61 PC.607_360
+62 PC.481_371
+63 PC.607_405
+64 PC.355_293
+65 PC.607_452
+66 PC.635_394
+67 PC.355_382 PC.481_317
+68 PC.355_374 PC.356_453 PC.355_353 PC.354_387 PC.481_307 PC.593_408
+69 PC.356_456
+70 PC.354_299
+71 PC.356_363
+72 PC.635_350
+73 PC.635_364
+74 PC.636_351
+75 PC.481_455
+76 PC.593_414
+77 PC.355_291
+78 PC.636_61
+79 PC.481_304
+80 PC.636_311
+81 PC.355_545
+82 PC.635_461
+83 PC.636_392
+84 PC.593_342
+85 PC.593_343
+86 PC.607_401
+87 PC.635_333
+88 PC.634_1
+89 PC.635_390
+90 PC.593_400
+91 PC.607_541
+92 PC.354_3 PC.354_412 PC.354_346
+93 PC.355_361
+94 PC.356_410
+95 PC.635_367
+96 PC.356_543 PC.636_366
@@ -0,0 +1,5 @@
+MothurOtuPicker parameters:
+Algorithm:furthest
+Application:mothur
+Similarity:0.97
+Result path: mothur_picked_otus//seqs.aligned_otus.txt
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