') : '';
- }
-}
-
-// Quotes Multi word font names; needed for CSS Standards adherence in font-family
-function quoteMultiNameFonts(theFont) {
- var v, pM=theFont.split(',');
- for (var i=0; i 0) clearTimeout(o3_timerid);
-
- o3_timerid=setTimeout("cClick()",(o3_timeout=time));
- }
-}
-
-// Was originally in the placeLayer() routine; separated out for future ease
-function horizontalPlacement(browserWidth, horizontalScrollAmount, widthFix) {
- var placeX, iwidth=browserWidth, winoffset=horizontalScrollAmount;
- var parsedWidth = parseInt(o3_width);
-
- if (o3_fixx > -1 || o3_relx != null) {
- // Fixed position
- placeX=(o3_relx != null ? ( o3_relx < 0 ? winoffset +o3_relx+ iwidth - parsedWidth - widthFix : winoffset+o3_relx) : o3_fixx);
- } else {
- // If HAUTO, decide what to use.
- if (o3_hauto == 1) {
- if ((o3_x - winoffset) > (iwidth / 2)) {
- o3_hpos = LEFT;
- } else {
- o3_hpos = RIGHT;
- }
- }
-
- // From mouse
- if (o3_hpos == CENTER) { // Center
- placeX = o3_x+o3_offsetx-(parsedWidth/2);
-
- if (placeX < winoffset) placeX = winoffset;
- }
-
- if (o3_hpos == RIGHT) { // Right
- placeX = o3_x+o3_offsetx;
-
- if ((placeX+parsedWidth) > (winoffset+iwidth - widthFix)) {
- placeX = iwidth+winoffset - parsedWidth - widthFix;
- if (placeX < 0) placeX = 0;
- }
- }
- if (o3_hpos == LEFT) { // Left
- placeX = o3_x-o3_offsetx-parsedWidth;
- if (placeX < winoffset) placeX = winoffset;
- }
-
- // Snapping!
- if (o3_snapx > 1) {
- var snapping = placeX % o3_snapx;
-
- if (o3_hpos == LEFT) {
- placeX = placeX - (o3_snapx+snapping);
- } else {
- // CENTER and RIGHT
- placeX = placeX+(o3_snapx - snapping);
- }
-
- if (placeX < winoffset) placeX = winoffset;
- }
- }
-
- return placeX;
-}
-
-// was originally in the placeLayer() routine; separated out for future ease
-function verticalPlacement(browserHeight,verticalScrollAmount) {
- var placeY, iheight=browserHeight, scrolloffset=verticalScrollAmount;
- var parsedHeight=(o3_aboveheight ? parseInt(o3_aboveheight) : (olNs4 ? over.clip.height : over.offsetHeight));
-
- if (o3_fixy > -1 || o3_rely != null) {
- // Fixed position
- placeY=(o3_rely != null ? (o3_rely < 0 ? scrolloffset+o3_rely+iheight - parsedHeight : scrolloffset+o3_rely) : o3_fixy);
- } else {
- // If VAUTO, decide what to use.
- if (o3_vauto == 1) {
- if ((o3_y - scrolloffset) > (iheight / 2) && o3_vpos == BELOW && (o3_y + parsedHeight + o3_offsety - (scrolloffset + iheight) > 0)) {
- o3_vpos = ABOVE;
- } else if (o3_vpos == ABOVE && (o3_y - (parsedHeight + o3_offsety) - scrolloffset < 0)) {
- o3_vpos = BELOW;
- }
- }
-
- // From mouse
- if (o3_vpos == ABOVE) {
- if (o3_aboveheight == 0) o3_aboveheight = parsedHeight;
-
- placeY = o3_y - (o3_aboveheight+o3_offsety);
- if (placeY < scrolloffset) placeY = scrolloffset;
- } else {
- // BELOW
- placeY = o3_y+o3_offsety;
- }
-
- // Snapping!
- if (o3_snapy > 1) {
- var snapping = placeY % o3_snapy;
-
- if (o3_aboveheight > 0 && o3_vpos == ABOVE) {
- placeY = placeY - (o3_snapy+snapping);
- } else {
- placeY = placeY+(o3_snapy - snapping);
- }
-
- if (placeY < scrolloffset) placeY = scrolloffset;
- }
- }
-
- return placeY;
-}
-
-// checks positioning flags
-function checkPositionFlags() {
- if (olHautoFlag) olHautoFlag = o3_hauto=0;
- if (olVautoFlag) olVautoFlag = o3_vauto=0;
- return true;
-}
-
-// get Browser window width
-function windowWidth() {
- var w;
- if (o3_frame.innerWidth) w=o3_frame.innerWidth;
- else if (eval('o3_frame.'+docRoot)&&eval("typeof o3_frame."+docRoot+".clientWidth=='number'")&&eval('o3_frame.'+docRoot+'.clientWidth'))
- w=eval('o3_frame.'+docRoot+'.clientWidth');
- return w;
-}
-
-// create the div container for popup content if it doesn't exist
-function createDivContainer(id,frm,zValue) {
- id = (id || 'overDiv'), frm = (frm || o3_frame), zValue = (zValue || 1000);
- var objRef, divContainer = layerReference(id);
-
- if (divContainer == null) {
- if (olNs4) {
- divContainer = frm.document.layers[id] = new Layer(window.innerWidth, frm);
- objRef = divContainer;
- } else {
- var body = (olIe4 ? frm.document.all.tags('BODY')[0] : frm.document.getElementsByTagName("BODY")[0]);
- if (olIe4&&!document.getElementById) {
- body.insertAdjacentHTML("beforeEnd",'');
- divContainer=layerReference(id);
- } else {
- divContainer = frm.document.createElement("DIV");
- divContainer.id = id;
- body.appendChild(divContainer);
- }
- objRef = divContainer.style;
- }
-
- objRef.position = 'absolute';
- objRef.visibility = 'hidden';
- objRef.zIndex = zValue;
- if (olIe4&&!olOp) objRef.left = objRef.top = '0px';
- else objRef.left = objRef.top = -10000 + (!olNs4 ? 'px' : 0);
- }
-
- return divContainer;
-}
-
-// get reference to a layer with ID=id
-function layerReference(id) {
- return (olNs4 ? o3_frame.document.layers[id] : (document.all ? o3_frame.document.all[id] : o3_frame.document.getElementById(id)));
-}
-////////
-// UTILITY FUNCTIONS
-////////
-
-// Checks if something is a function.
-function isFunction(fnRef) {
- var rtn = true;
-
- if (typeof fnRef == 'object') {
- for (var i = 0; i < fnRef.length; i++) {
- if (typeof fnRef[i]=='function') continue;
- rtn = false;
- break;
- }
- } else if (typeof fnRef != 'function') {
- rtn = false;
- }
-
- return rtn;
-}
-
-// Converts an array into an argument string for use in eval.
-function argToString(array, strtInd, argName) {
- var jS = strtInd, aS = '', ar = array;
- argName=(argName ? argName : 'ar');
-
- if (ar.length > jS) {
- for (var k = jS; k < ar.length; k++) aS += argName+'['+k+'], ';
- aS = aS.substring(0, aS.length-2);
- }
-
- return aS;
-}
-
-// Places a hook in the correct position in a hook point.
-function reOrder(hookPt, fnRef, order) {
- var newPt = new Array(), match, i, j;
-
- if (!order || typeof order == 'undefined' || typeof order == 'number') return hookPt;
-
- if (typeof order=='function') {
- if (typeof fnRef=='object') {
- newPt = newPt.concat(fnRef);
- } else {
- newPt[newPt.length++]=fnRef;
- }
-
- for (i = 0; i < hookPt.length; i++) {
- match = false;
- if (typeof fnRef == 'function' && hookPt[i] == fnRef) {
- continue;
- } else {
- for(j = 0; j < fnRef.length; j++) if (hookPt[i] == fnRef[j]) {
- match = true;
- break;
- }
- }
- if (!match) newPt[newPt.length++] = hookPt[i];
- }
-
- newPt[newPt.length++] = order;
-
- } else if (typeof order == 'object') {
- if (typeof fnRef == 'object') {
- newPt = newPt.concat(fnRef);
- } else {
- newPt[newPt.length++] = fnRef;
- }
-
- for (j = 0; j < hookPt.length; j++) {
- match = false;
- if (typeof fnRef == 'function' && hookPt[j] == fnRef) {
- continue;
- } else {
- for (i = 0; i < fnRef.length; i++) if (hookPt[j] == fnRef[i]) {
- match = true;
- break;
- }
- }
- if (!match) newPt[newPt.length++]=hookPt[j];
- }
-
- for (i = 0; i < newPt.length; i++) hookPt[i] = newPt[i];
- newPt.length = 0;
-
- for (j = 0; j < hookPt.length; j++) {
- match = false;
- for (i = 0; i < order.length; i++) {
- if (hookPt[j] == order[i]) {
- match = true;
- break;
- }
- }
- if (!match) newPt[newPt.length++] = hookPt[j];
- }
- newPt = newPt.concat(order);
- }
-
- hookPt = newPt;
-
- return hookPt;
-}
-
-////////
-// PLUGIN ACTIVATION FUNCTIONS
-////////
-
-// Runs plugin functions to set runtime variables.
-function setRunTimeVariables(){
- if (typeof runTime != 'undefined' && runTime.length) {
- for (var k = 0; k < runTime.length; k++) {
- runTime[k]();
- }
- }
-}
-
-// Runs plugin functions to parse commands.
-function parseCmdLine(pf, i, args) {
- if (typeof cmdLine != 'undefined' && cmdLine.length) {
- for (var k = 0; k < cmdLine.length; k++) {
- var j = cmdLine[k](pf, i, args);
- if (j >- 1) {
- i = j;
- break;
- }
- }
- }
-
- return i;
-}
-
-// Runs plugin functions to do things after parse.
-function postParseChecks(pf,args){
- if (typeof postParse != 'undefined' && postParse.length) {
- for (var k = 0; k < postParse.length; k++) {
- if (postParse[k](pf,args)) continue;
- return false; // end now since have an error
- }
- }
- return true;
-}
-
-
-////////
-// PLUGIN REGISTRATION FUNCTIONS
-////////
-
-// Registers commands and creates constants.
-function registerCommands(cmdStr) {
- if (typeof cmdStr!='string') return;
-
- var pM = cmdStr.split(',');
- pms = pms.concat(pM);
-
- for (var i = 0; i< pM.length; i++) {
- eval(pM[i].toUpperCase()+'='+pmCount++);
- }
-}
-
-// Registers no-parameter commands
-function registerNoParameterCommands(cmdStr) {
- if (!cmdStr && typeof cmdStr != 'string') return;
- pmt=(!pmt) ? cmdStr : pmt + ',' + cmdStr;
-}
-
-// Register a function to hook at a certain point.
-function registerHook(fnHookTo, fnRef, hookType, optPm) {
- var hookPt, last = typeof optPm;
-
- if (fnHookTo == 'plgIn'||fnHookTo == 'postParse') return;
- if (typeof hookPts[fnHookTo] == 'undefined') hookPts[fnHookTo] = new FunctionReference();
-
- hookPt = hookPts[fnHookTo];
-
- if (hookType != null) {
- if (hookType == FREPLACE) {
- hookPt.ovload = fnRef; // replace normal overlib routine
- if (fnHookTo.indexOf('ol_content_') > -1) hookPt.alt[pms[CSSOFF-1-pmStart]]=fnRef;
-
- } else if (hookType == FBEFORE || hookType == FAFTER) {
- var hookPt=(hookType == 1 ? hookPt.before : hookPt.after);
-
- if (typeof fnRef == 'object') {
- hookPt = hookPt.concat(fnRef);
- } else {
- hookPt[hookPt.length++] = fnRef;
- }
-
- if (optPm) hookPt = reOrder(hookPt, fnRef, optPm);
-
- } else if (hookType == FALTERNATE) {
- if (last=='number') hookPt.alt[pms[optPm-1-pmStart]] = fnRef;
- } else if (hookType == FCHAIN) {
- hookPt = hookPt.chain;
- if (typeof fnRef=='object') hookPt=hookPt.concat(fnRef); // add other functions
- else hookPt[hookPt.length++]=fnRef;
- }
-
- return;
- }
-}
-
-// Register a function that will set runtime variables.
-function registerRunTimeFunction(fn) {
- if (isFunction(fn)) {
- if (typeof fn == 'object') {
- runTime = runTime.concat(fn);
- } else {
- runTime[runTime.length++] = fn;
- }
- }
-}
-
-// Register a function that will handle command parsing.
-function registerCmdLineFunction(fn){
- if (isFunction(fn)) {
- if (typeof fn == 'object') {
- cmdLine = cmdLine.concat(fn);
- } else {
- cmdLine[cmdLine.length++] = fn;
- }
- }
-}
-
-// Register a function that does things after command parsing.
-function registerPostParseFunction(fn){
- if (isFunction(fn)) {
- if (typeof fn == 'object') {
- postParse = postParse.concat(fn);
- } else {
- postParse[postParse.length++] = fn;
- }
- }
-}
-
-////////
-// PLUGIN REGISTRATION FUNCTIONS
-////////
-
-// Runs any hooks registered.
-function runHook(fnHookTo, hookType) {
- var l = hookPts[fnHookTo], k, rtnVal = null, optPm, arS, ar = runHook.arguments;
-
- if (hookType == FREPLACE) {
- arS = argToString(ar, 2);
-
- if (typeof l == 'undefined' || !(l = l.ovload)) rtnVal = eval(fnHookTo+'('+arS+')');
- else rtnVal = eval('l('+arS+')');
-
- } else if (hookType == FBEFORE || hookType == FAFTER) {
- if (typeof l != 'undefined') {
- l=(hookType == 1 ? l.before : l.after);
-
- if (l.length) {
- arS = argToString(ar, 2);
- for (var k = 0; k < l.length; k++) eval('l[k]('+arS+')');
- }
- }
- } else if (hookType == FALTERNATE) {
- optPm = ar[2];
- arS = argToString(ar, 3);
-
- if (typeof l == 'undefined' || (l = l.alt[pms[optPm-1-pmStart]]) == 'undefined') {
- rtnVal = eval(fnHookTo+'('+arS+')');
- } else {
- rtnVal = eval('l('+arS+')');
- }
- } else if (hookType == FCHAIN) {
- arS=argToString(ar,2);
- l=l.chain;
-
- for (k=l.length; k > 0; k--) if((rtnVal=eval('l[k-1]('+arS+')'))!=void(0)) break;
- }
-
- return rtnVal;
-}
-
-////////
-// OBJECT CONSTRUCTORS
-////////
-
-// Object for handling hooks.
-function FunctionReference() {
- this.ovload = null;
- this.before = new Array();
- this.after = new Array();
- this.alt = new Array();
- this.chain = new Array();
-}
-
-// Object for simple access to the overLIB version used.
-// Examples: simpleversion:351 major:3 minor:5 revision:1
-function Info(version, prerelease) {
- this.version = version;
- this.prerelease = prerelease;
-
- this.simpleversion = Math.round(this.version*100);
- this.major = parseInt(this.simpleversion / 100);
- this.minor = parseInt(this.simpleversion / 10) - this.major * 10;
- this.revision = parseInt(this.simpleversion) - this.major * 100 - this.minor * 10;
- this.meets = meets;
-}
-
-// checks for Core Version required
-function meets(reqdVersion) {
- return (!reqdVersion) ? false : this.simpleversion >= Math.round(100*parseFloat(reqdVersion));
-}
-
-
-////////
-// STANDARD REGISTRATIONS
-////////
-registerHook("ol_content_simple", ol_content_simple, FALTERNATE, CSSOFF);
-registerHook("ol_content_caption", ol_content_caption, FALTERNATE, CSSOFF);
-registerHook("ol_content_background", ol_content_background, FALTERNATE, CSSOFF);
-registerHook("ol_content_simple", ol_content_simple, FALTERNATE, CSSCLASS);
-registerHook("ol_content_caption", ol_content_caption, FALTERNATE, CSSCLASS);
-registerHook("ol_content_background", ol_content_background, FALTERNATE, CSSCLASS);
-registerPostParseFunction(checkPositionFlags);
-registerHook("hideObject", nbspCleanup, FAFTER);
-registerHook("horizontalPlacement", horizontalPlacement, FCHAIN);
-registerHook("verticalPlacement", verticalPlacement, FCHAIN);
-if (olNs4||(olIe5&&isMac)||olKq) olLoaded=1;
-registerNoParameterCommands('sticky,autostatus,autostatuscap,fullhtml,hauto,vauto,closeclick,wrap,followmouse,mouseoff,compatmode');
-///////
-// ESTABLISH MOUSECAPTURING
-///////
-
-// Capture events, alt. diffuses the overlib function.
-var olCheckMouseCapture=true;
-if ((olNs4 || olNs6 || olIe4)) {
- olMouseCapture();
-} else {
- overlib = no_overlib;
- nd = no_overlib;
- ver3fix = true;
-}
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Please give credit on sites that -//\ use overLIB and submit changes of the script so other people can use -//\ them as well. -// $Revision: 1.1 $ $Date: 2009/07/14 16:51:16 $ -//\///// -//\mini - -//////// -// PRE-INIT -// Ignore these lines, configuration is below. -//////// -var olLoaded = 0;var pmStart = 10000000; var pmUpper = 10001000; var pmCount = pmStart+1; var pmt=''; var pms = new Array(); var olInfo = new Info('4.21', 1); -var FREPLACE = 0; var FBEFORE = 1; var FAFTER = 2; var FALTERNATE = 3; var FCHAIN=4; -var olHideForm=0; // parameter for hiding SELECT and ActiveX elements in IE5.5+ -var olHautoFlag = 0; // flags for over-riding VAUTO and HAUTO if corresponding -var olVautoFlag = 0; // positioning commands are used on the command line -var hookPts = new Array(), postParse = new Array(), cmdLine = new Array(), runTime = new Array(); -// for plugins -registerCommands('donothing,inarray,caparray,sticky,background,noclose,caption,left,right,center,offsetx,offsety,fgcolor,bgcolor,textcolor,capcolor,closecolor,width,border,cellpad,status,autostatus,autostatuscap,height,closetext,snapx,snapy,fixx,fixy,relx,rely,fgbackground,bgbackground,padx,pady,fullhtml,above,below,capicon,textfont,captionfont,closefont,textsize,captionsize,closesize,timeout,function,delay,hauto,vauto,closeclick,wrap,followmouse,mouseoff,closetitle,cssoff,compatmode,cssclass,fgclass,bgclass,textfontclass,captionfontclass,closefontclass'); - -//////// -// DEFAULT CONFIGURATION -// Settings you want everywhere are set here. All of this can also be -// changed on your html page or through an overLIB call. -//////// -if (typeof ol_fgcolor=='undefined') var ol_fgcolor="#CCCCFF"; -if (typeof ol_bgcolor=='undefined') var ol_bgcolor="#333399"; -if (typeof ol_textcolor=='undefined') var ol_textcolor="#000000"; -if (typeof ol_capcolor=='undefined') var ol_capcolor="#FFFFFF"; -if (typeof ol_closecolor=='undefined') var ol_closecolor="#9999FF"; -if (typeof ol_textfont=='undefined') var ol_textfont="Verdana,Arial,Helvetica"; -if (typeof ol_captionfont=='undefined') var ol_captionfont="Verdana,Arial,Helvetica"; -if (typeof ol_closefont=='undefined') var ol_closefont="Verdana,Arial,Helvetica"; -if (typeof ol_textsize=='undefined') var ol_textsize="1"; -if (typeof ol_captionsize=='undefined') var ol_captionsize="1"; -if (typeof ol_closesize=='undefined') var ol_closesize="1"; -if (typeof ol_width=='undefined') var ol_width="200"; -if (typeof ol_border=='undefined') var ol_border="1"; -if (typeof ol_cellpad=='undefined') var ol_cellpad=2; -if (typeof ol_offsetx=='undefined') var ol_offsetx=10; -if (typeof ol_offsety=='undefined') var ol_offsety=10; -if (typeof ol_text=='undefined') var ol_text="Default Text"; -if (typeof ol_cap=='undefined') var ol_cap=""; -if (typeof ol_sticky=='undefined') var ol_sticky=0; -if (typeof ol_background=='undefined') var ol_background=""; -if (typeof ol_close=='undefined') var ol_close="Close"; -if (typeof ol_hpos=='undefined') var ol_hpos=RIGHT; -if (typeof ol_status=='undefined') var ol_status=""; -if (typeof ol_autostatus=='undefined') var ol_autostatus=0; -if (typeof ol_height=='undefined') var ol_height=-1; -if (typeof ol_snapx=='undefined') var ol_snapx=0; -if (typeof ol_snapy=='undefined') var ol_snapy=0; -if (typeof ol_fixx=='undefined') var ol_fixx=-1; -if (typeof ol_fixy=='undefined') var ol_fixy=-1; -if (typeof ol_relx=='undefined') var ol_relx=null; -if (typeof ol_rely=='undefined') var ol_rely=null; -if (typeof ol_fgbackground=='undefined') var ol_fgbackground=""; -if (typeof ol_bgbackground=='undefined') var ol_bgbackground=""; -if (typeof ol_padxl=='undefined') var ol_padxl=1; -if (typeof ol_padxr=='undefined') var ol_padxr=1; -if (typeof ol_padyt=='undefined') var ol_padyt=1; -if (typeof ol_padyb=='undefined') var ol_padyb=1; -if (typeof ol_fullhtml=='undefined') var ol_fullhtml=0; -if (typeof ol_vpos=='undefined') var ol_vpos=BELOW; -if (typeof ol_aboveheight=='undefined') var ol_aboveheight=0; -if (typeof ol_capicon=='undefined') var ol_capicon=""; -if (typeof ol_frame=='undefined') var ol_frame=self; -if (typeof ol_timeout=='undefined') var ol_timeout=0; -if (typeof ol_function=='undefined') var ol_function=null; -if (typeof ol_delay=='undefined') var ol_delay=0; -if (typeof ol_hauto=='undefined') var ol_hauto=0; -if (typeof ol_vauto=='undefined') var ol_vauto=0; -if (typeof ol_closeclick=='undefined') var ol_closeclick=0; -if (typeof ol_wrap=='undefined') var ol_wrap=0; -if (typeof ol_followmouse=='undefined') var ol_followmouse=1; -if (typeof ol_mouseoff=='undefined') var ol_mouseoff=0; -if (typeof ol_closetitle=='undefined') var ol_closetitle='Close'; -if (typeof ol_compatmode=='undefined') var ol_compatmode=0; -if (typeof ol_css=='undefined') var ol_css=CSSOFF; -if (typeof ol_fgclass=='undefined') var ol_fgclass=""; -if (typeof ol_bgclass=='undefined') var ol_bgclass=""; -if (typeof ol_textfontclass=='undefined') var ol_textfontclass=""; -if (typeof ol_captionfontclass=='undefined') var ol_captionfontclass=""; -if (typeof ol_closefontclass=='undefined') var ol_closefontclass=""; - -//////// -// ARRAY CONFIGURATION -//////// - -// You can use these arrays to store popup text here instead of in the html. -if (typeof ol_texts=='undefined') var ol_texts = new Array("Text 0", "Text 1"); -if (typeof ol_caps=='undefined') var ol_caps = new Array("Caption 0", "Caption 1"); - -//////// -// END OF CONFIGURATION -// Don't change anything below this line, all configuration is above. -//////// - - - - - -//////// -// INIT -//////// -// Runtime variables init. Don't change for config! -var o3_text=""; -var o3_cap=""; -var o3_sticky=0; -var o3_background=""; -var o3_close="Close"; -var o3_hpos=RIGHT; -var o3_offsetx=2; -var o3_offsety=2; -var o3_fgcolor=""; -var o3_bgcolor=""; -var o3_textcolor=""; -var o3_capcolor=""; -var o3_closecolor=""; -var o3_width=100; -var o3_border=1; -var o3_cellpad=2; -var o3_status=""; -var o3_autostatus=0; -var o3_height=-1; -var o3_snapx=0; -var o3_snapy=0; -var o3_fixx=-1; -var o3_fixy=-1; -var o3_relx=null; -var o3_rely=null; -var o3_fgbackground=""; -var o3_bgbackground=""; -var o3_padxl=0; -var o3_padxr=0; -var o3_padyt=0; -var o3_padyb=0; -var o3_fullhtml=0; -var o3_vpos=BELOW; -var o3_aboveheight=0; -var o3_capicon=""; -var o3_textfont="Verdana,Arial,Helvetica"; -var o3_captionfont="Verdana,Arial,Helvetica"; -var o3_closefont="Verdana,Arial,Helvetica"; -var o3_textsize="1"; -var o3_captionsize="1"; -var o3_closesize="1"; -var o3_frame=self; -var o3_timeout=0; -var o3_timerid=0; -var o3_allowmove=0; -var o3_function=null; -var o3_delay=0; -var o3_delayid=0; -var o3_hauto=0; -var o3_vauto=0; -var o3_closeclick=0; -var o3_wrap=0; -var o3_followmouse=1; -var o3_mouseoff=0; -var o3_closetitle=''; -var o3_compatmode=0; -var o3_css=CSSOFF; -var o3_fgclass=""; -var o3_bgclass=""; -var o3_textfontclass=""; -var o3_captionfontclass=""; -var o3_closefontclass=""; - -// Display state variables -var o3_x = 0; -var o3_y = 0; -var o3_showingsticky = 0; -var o3_removecounter = 0; - -// Our layer -var over = null; -var fnRef, hoveringSwitch = false; -var olHideDelay; - -// Decide browser version -var isMac = (navigator.userAgent.indexOf("Mac") != -1); -var olOp = (navigator.userAgent.toLowerCase().indexOf('opera') > -1 && document.createTextNode); // Opera 7 -var olNs4 = (navigator.appName=='Netscape' && parseInt(navigator.appVersion) == 4); -var olNs6 = (document.getElementById) ? true : false; -var olKq = (olNs6 && /konqueror/i.test(navigator.userAgent)); -var olIe4 = (document.all) ? true : false; -var olIe5 = false; -var olIe55 = false; // Added additional variable to identify IE5.5+ -var docRoot = 'document.body'; - -// Resize fix for NS4.x to keep track of layer -if (olNs4) { - var oW = window.innerWidth; - var oH = window.innerHeight; - window.onresize = function() { if (oW != window.innerWidth || oH != window.innerHeight) location.reload(); } -} - -// Microsoft Stupidity Check(tm). -if (olIe4) { - var agent = navigator.userAgent; - if (/MSIE/.test(agent)) { - var versNum = parseFloat(agent.match(/MSIE[ ](\d\.\d+)\.*/i)[1]); - if (versNum >= 5){ - olIe5=true; - olIe55=(versNum>=5.5&&!olOp) ? true : false; - if (olNs6) olNs6=false; - } - } - if (olNs6) olIe4 = false; -} - -// Check for compatability mode. -if (document.compatMode && document.compatMode == 'CSS1Compat') { - docRoot= ((olIe4 && !olOp) ? 'document.documentElement' : docRoot); -} - -// Add window onload handlers to indicate when all modules have been loaded -// For Netscape 6+ and Mozilla, uses addEventListener method on the window object -// For IE it uses the attachEvent method of the window object and for Netscape 4.x -// it sets the window.onload handler to the OLonload_handler function for Bubbling -if(window.addEventListener) window.addEventListener("load",OLonLoad_handler,false); -else if (window.attachEvent) window.attachEvent("onload",OLonLoad_handler); - -var capExtent; - -//////// -// PUBLIC FUNCTIONS -//////// - -// overlib(arg0,...,argN) -// Loads parameters into global runtime variables. -function overlib() { - if (!olLoaded || isExclusive(overlib.arguments)) return true; - if (olCheckMouseCapture) olMouseCapture(); - if (over) { - over = (typeof over.id != 'string') ? o3_frame.document.all['overDiv'] : over; - cClick(); - } - - // Load defaults to runtime. - olHideDelay=0; - o3_text=ol_text; - o3_cap=ol_cap; - o3_sticky=ol_sticky; - o3_background=ol_background; - o3_close=ol_close; - o3_hpos=ol_hpos; - o3_offsetx=ol_offsetx; - o3_offsety=ol_offsety; - o3_fgcolor=ol_fgcolor; - o3_bgcolor=ol_bgcolor; - o3_textcolor=ol_textcolor; - o3_capcolor=ol_capcolor; - o3_closecolor=ol_closecolor; - o3_width=ol_width; - o3_border=ol_border; - o3_cellpad=ol_cellpad; - o3_status=ol_status; - o3_autostatus=ol_autostatus; - o3_height=ol_height; - o3_snapx=ol_snapx; - o3_snapy=ol_snapy; - o3_fixx=ol_fixx; - o3_fixy=ol_fixy; - o3_relx=ol_relx; - o3_rely=ol_rely; - o3_fgbackground=ol_fgbackground; - o3_bgbackground=ol_bgbackground; - o3_padxl=ol_padxl; - o3_padxr=ol_padxr; - o3_padyt=ol_padyt; - o3_padyb=ol_padyb; - o3_fullhtml=ol_fullhtml; - o3_vpos=ol_vpos; - o3_aboveheight=ol_aboveheight; - o3_capicon=ol_capicon; - o3_textfont=ol_textfont; - o3_captionfont=ol_captionfont; - o3_closefont=ol_closefont; - o3_textsize=ol_textsize; - o3_captionsize=ol_captionsize; - o3_closesize=ol_closesize; - o3_timeout=ol_timeout; - o3_function=ol_function; - o3_delay=ol_delay; - o3_hauto=ol_hauto; - o3_vauto=ol_vauto; - o3_closeclick=ol_closeclick; - o3_wrap=ol_wrap; - o3_followmouse=ol_followmouse; - o3_mouseoff=ol_mouseoff; - o3_closetitle=ol_closetitle; - o3_css=ol_css; - o3_compatmode=ol_compatmode; - o3_fgclass=ol_fgclass; - o3_bgclass=ol_bgclass; - o3_textfontclass=ol_textfontclass; - o3_captionfontclass=ol_captionfontclass; - o3_closefontclass=ol_closefontclass; - - setRunTimeVariables(); - - fnRef = ''; - - // Special for frame support, over must be reset... - o3_frame = ol_frame; - - if(!(over=createDivContainer())) return false; - - parseTokens('o3_', overlib.arguments); - if (!postParseChecks()) return false; - - if (o3_delay == 0) { - return runHook("olMain", FREPLACE); - } else { - o3_delayid = setTimeout("runHook('olMain', FREPLACE)", o3_delay); - return false; - } -} - -// Clears popups if appropriate -function nd(time) { - if (olLoaded && !isExclusive()) { - hideDelay(time); // delay popup close if time specified - - if (o3_removecounter >= 1) { o3_showingsticky = 0 }; - - if (o3_showingsticky == 0) { - o3_allowmove = 0; - if (over != null && o3_timerid == 0) runHook("hideObject", FREPLACE, over); - } else { - o3_removecounter++; - } - } - - return true; -} - -// The Close onMouseOver function for stickies -function cClick() { - if (olLoaded) { - runHook("hideObject", FREPLACE, over); - o3_showingsticky = 0; - } - return false; -} - -// Method for setting page specific defaults. -function overlib_pagedefaults() { - parseTokens('ol_', overlib_pagedefaults.arguments); -} - - -//////// -// OVERLIB MAIN FUNCTION -//////// - -// This function decides what it is we want to display and how we want it done. -function olMain() { - var layerhtml, styleType; - runHook("olMain", FBEFORE); - - if (o3_background!="" || o3_fullhtml) { - // Use background instead of box. - layerhtml = runHook('ol_content_background', FALTERNATE, o3_css, o3_text, o3_background, o3_fullhtml); - } else { - // They want a popup box. - styleType = (pms[o3_css-1-pmStart] == "cssoff" || pms[o3_css-1-pmStart] == "cssclass"); - - // Prepare popup background - if (o3_fgbackground != "") o3_fgbackground = "background=\""+o3_fgbackground+"\""; - if (o3_bgbackground != "") o3_bgbackground = (styleType ? "background=\""+o3_bgbackground+"\"" : o3_bgbackground); - - // Prepare popup colors - if (o3_fgcolor != "") o3_fgcolor = (styleType ? "bgcolor=\""+o3_fgcolor+"\"" : o3_fgcolor); - if (o3_bgcolor != "") o3_bgcolor = (styleType ? "bgcolor=\""+o3_bgcolor+"\"" : o3_bgcolor); - - // Prepare popup height - if (o3_height > 0) o3_height = (styleType ? "height=\""+o3_height+"\"" : o3_height); - else o3_height = ""; - - // Decide which kinda box. - if (o3_cap=="") { - // Plain - layerhtml = runHook('ol_content_simple', FALTERNATE, o3_css, o3_text); - } else { - // With caption - if (o3_sticky) { - // Show close text - layerhtml = runHook('ol_content_caption', FALTERNATE, o3_css, o3_text, o3_cap, o3_close); - } else { - // No close text - layerhtml = runHook('ol_content_caption', FALTERNATE, o3_css, o3_text, o3_cap, ""); - } - } - } - - // We want it to stick! - if (o3_sticky) { - if (o3_timerid > 0) { - clearTimeout(o3_timerid); - o3_timerid = 0; - } - o3_showingsticky = 1; - o3_removecounter = 0; - } - - // Created a separate routine to generate the popup to make it easier - // to implement a plugin capability - if (!runHook("createPopup", FREPLACE, layerhtml)) return false; - - // Prepare status bar - if (o3_autostatus > 0) { - o3_status = o3_text; - if (o3_autostatus > 1) o3_status = o3_cap; - } - - // When placing the layer the first time, even stickies may be moved. - o3_allowmove = 0; - - // Initiate a timer for timeout - if (o3_timeout > 0) { - if (o3_timerid > 0) clearTimeout(o3_timerid); - o3_timerid = setTimeout("cClick()", o3_timeout); - } - - // Show layer - runHook("disp", FREPLACE, o3_status); - runHook("olMain", FAFTER); - - return (olOp && event && event.type == 'mouseover' && !o3_status) ? '' : (o3_status != ''); -} - -//////// -// LAYER GENERATION FUNCTIONS -//////// -// These functions just handle popup content with tags that should adhere to the W3C standards specification. - -// Makes simple table without caption -function ol_content_simple(text) { - var cpIsMultiple = /,/.test(o3_cellpad); - var txt = '
';
-
- set_background("");
- return txt;
-}
-
-// Makes table with caption and optional close link
-function ol_content_caption(text,title,close) {
- var nameId, txt, cpIsMultiple = /,/.test(o3_cellpad);
- var closing, closeevent;
-
- closing = "";
- closeevent = "onmouseover";
- if (o3_closeclick == 1) closeevent = (o3_closetitle ? "title='" + o3_closetitle +"'" : "") + " onclick";
- if (o3_capicon != "") {
- nameId = ' hspace = \"5\"'+' align = \"middle\" alt = \"\"';
- if (typeof o3_dragimg != 'undefined' && o3_dragimg) nameId =' hspace=\"5\"'+' name=\"'+o3_dragimg+'\" id=\"'+o3_dragimg+'\" align=\"middle\" alt=\"Drag Enabled\" title=\"Drag Enabled\"';
- o3_capicon = '![](\"'+o3_capicon+'\"'+nameId+')
';
- }
-
- if (close != "")
- closing = ''+(o3_closefontclass ? '' : wrapStr(0,o3_closesize,'close'))+close+(o3_closefontclass ? '' : wrapStr(1,o3_closesize,'close'))+' ';
- txt = '
';
-
- set_background("");
- return txt;
-}
-
-// Sets the background picture,padding and lots more. :)
-function ol_content_background(text,picture,hasfullhtml) {
- if (hasfullhtml) {
- txt=text;
- } else {
- txt='
';
- }
-
- set_background(picture);
- return txt;
-}
-
-// Loads a picture into the div.
-function set_background(pic) {
- if (pic == "") {
- if (olNs4) {
- over.background.src = null;
- } else if (over.style) {
- over.style.backgroundImage = "none";
- }
- } else {
- if (olNs4) {
- over.background.src = pic;
- } else if (over.style) {
- over.style.width=o3_width + 'px';
- over.style.backgroundImage = "url("+pic+")";
- }
- }
-}
-
-////////
-// HANDLING FUNCTIONS
-////////
-var olShowId=-1;
-
-// Displays the popup
-function disp(statustext) {
- runHook("disp", FBEFORE);
-
- if (o3_allowmove == 0) {
- runHook("placeLayer", FREPLACE);
- (olNs6&&olShowId<0) ? olShowId=setTimeout("runHook('showObject', FREPLACE, over)", 1) : runHook("showObject", FREPLACE, over);
- o3_allowmove = (o3_sticky || o3_followmouse==0) ? 0 : 1;
- }
-
- runHook("disp", FAFTER);
-
- if (statustext != "") self.status = statustext;
-}
-
-// Creates the actual popup structure
-function createPopup(lyrContent){
- runHook("createPopup", FBEFORE);
-
- if (o3_wrap) {
- var wd,ww,theObj = (olNs4 ? over : over.style);
- theObj.top = theObj.left = ((olIe4&&!olOp) ? 0 : -10000) + (!olNs4 ? 'px' : 0);
- layerWrite(lyrContent);
- wd = (olNs4 ? over.clip.width : over.offsetWidth);
- if (wd > (ww=windowWidth())) {
- lyrContent=lyrContent.replace(/\ /g, ' ');
- o3_width=ww;
- o3_wrap=0;
- }
- }
-
- layerWrite(lyrContent);
-
- // Have to set o3_width for placeLayer() routine if o3_wrap is turned on
- if (o3_wrap) o3_width=(olNs4 ? over.clip.width : over.offsetWidth);
-
- runHook("createPopup", FAFTER, lyrContent);
-
- return true;
-}
-
-// Decides where we want the popup.
-function placeLayer() {
- var placeX, placeY, widthFix = 0;
-
- // HORIZONTAL PLACEMENT, re-arranged to work in Safari
- if (o3_frame.innerWidth) widthFix=18;
- iwidth = windowWidth();
-
- // Horizontal scroll offset
- winoffset=(olIe4) ? eval('o3_frame.'+docRoot+'.scrollLeft') : o3_frame.pageXOffset;
-
- placeX = runHook('horizontalPlacement',FCHAIN,iwidth,winoffset,widthFix);
-
- // VERTICAL PLACEMENT, re-arranged to work in Safari
- if (o3_frame.innerHeight) {
- iheight=o3_frame.innerHeight;
- } else if (eval('o3_frame.'+docRoot)&&eval("typeof o3_frame."+docRoot+".clientHeight=='number'")&&eval('o3_frame.'+docRoot+'.clientHeight')) {
- iheight=eval('o3_frame.'+docRoot+'.clientHeight');
- }
-
- // Vertical scroll offset
- scrolloffset=(olIe4) ? eval('o3_frame.'+docRoot+'.scrollTop') : o3_frame.pageYOffset;
- placeY = runHook('verticalPlacement',FCHAIN,iheight,scrolloffset);
-
- // Actually move the object.
- repositionTo(over, placeX, placeY);
-}
-
-// Moves the layer
-function olMouseMove(e) {
- var e = (e) ? e : event;
-
- if (e.pageX) {
- o3_x = e.pageX;
- o3_y = e.pageY;
- } else if (e.clientX) {
- o3_x = eval('e.clientX+o3_frame.'+docRoot+'.scrollLeft');
- o3_y = eval('e.clientY+o3_frame.'+docRoot+'.scrollTop');
- }
-
- if (o3_allowmove == 1) runHook("placeLayer", FREPLACE);
-
- // MouseOut handler
- if (hoveringSwitch && !olNs4 && runHook("cursorOff", FREPLACE)) {
- (olHideDelay ? hideDelay(olHideDelay) : cClick());
- hoveringSwitch = !hoveringSwitch;
- }
-}
-
-// Fake function for 3.0 users.
-function no_overlib() { return ver3fix; }
-
-// Capture the mouse and chain other scripts.
-function olMouseCapture() {
- capExtent = document;
- var fN, str = '', l, k, f, wMv, sS, mseHandler = olMouseMove;
- var re = /function[ ]*(\w*)\(/;
-
- wMv = (!olIe4 && window.onmousemove);
- if (document.onmousemove || wMv) {
- if (wMv) capExtent = window;
- f = capExtent.onmousemove.toString();
- fN = f.match(re);
- if (fN == null) {
- str = f+'(e); ';
- } else if (fN[1] == 'anonymous' || fN[1] == 'olMouseMove' || (wMv && fN[1] == 'onmousemove')) {
- if (!olOp && wMv) {
- l = f.indexOf('{')+1;
- k = f.lastIndexOf('}');
- sS = f.substring(l,k);
- if ((l = sS.indexOf('(')) != -1) {
- sS = sS.substring(0,l).replace(/^\s+/,'').replace(/\s+$/,'');
- if (eval("typeof " + sS + " == 'undefined'")) window.onmousemove = null;
- else str = sS + '(e);';
- }
- }
- if (!str) {
- olCheckMouseCapture = false;
- return;
- }
- } else {
- if (fN[1]) str = fN[1]+'(e); ';
- else {
- l = f.indexOf('{')+1;
- k = f.lastIndexOf('}');
- str = f.substring(l,k) + '\n';
- }
- }
- str += 'olMouseMove(e); ';
- mseHandler = new Function('e', str);
- }
-
- capExtent.onmousemove = mseHandler;
- if (olNs4) capExtent.captureEvents(Event.MOUSEMOVE);
-}
-
-////////
-// PARSING FUNCTIONS
-////////
-
-// Does the actual command parsing.
-function parseTokens(pf, ar) {
- // What the next argument is expected to be.
- var v, i, mode=-1, par = (pf != 'ol_');
- var fnMark = (par && !ar.length ? 1 : 0);
-
- for (i = 0; i < ar.length; i++) {
- if (mode < 0) {
- // Arg is maintext,unless its a number between pmStart and pmUpper
- // then its a command.
- if (typeof ar[i] == 'number' && ar[i] > pmStart && ar[i] < pmUpper) {
- fnMark = (par ? 1 : 0);
- i--; // backup one so that the next block can parse it
- } else {
- switch(pf) {
- case 'ol_':
- ol_text = ar[i].toString();
- break;
- default:
- o3_text=ar[i].toString();
- }
- }
- mode = 0;
- } else {
- // Note: NS4 doesn't like switch cases with vars.
- if (ar[i] >= pmCount || ar[i]==DONOTHING) { continue; }
- if (ar[i]==INARRAY) { fnMark = 0; eval(pf+'text=ol_texts['+ar[++i]+'].toString()'); continue; }
- if (ar[i]==CAPARRAY) { eval(pf+'cap=ol_caps['+ar[++i]+'].toString()'); continue; }
- if (ar[i]==STICKY) { if (pf!='ol_') eval(pf+'sticky=1'); continue; }
- if (ar[i]==BACKGROUND) { eval(pf+'background="'+ar[++i]+'"'); continue; }
- if (ar[i]==NOCLOSE) { if (pf!='ol_') opt_NOCLOSE(); continue; }
- if (ar[i]==CAPTION) { eval(pf+"cap='"+escSglQuote(ar[++i])+"'"); continue; }
- if (ar[i]==CENTER || ar[i]==LEFT || ar[i]==RIGHT) { eval(pf+'hpos='+ar[i]); if(pf!='ol_') olHautoFlag=1; continue; }
- if (ar[i]==OFFSETX) { eval(pf+'offsetx='+ar[++i]); continue; }
- if (ar[i]==OFFSETY) { eval(pf+'offsety='+ar[++i]); continue; }
- if (ar[i]==FGCOLOR) { eval(pf+'fgcolor="'+ar[++i]+'"'); continue; }
- if (ar[i]==BGCOLOR) { eval(pf+'bgcolor="'+ar[++i]+'"'); continue; }
- if (ar[i]==TEXTCOLOR) { eval(pf+'textcolor="'+ar[++i]+'"'); continue; }
- if (ar[i]==CAPCOLOR) { eval(pf+'capcolor="'+ar[++i]+'"'); continue; }
- if (ar[i]==CLOSECOLOR) { eval(pf+'closecolor="'+ar[++i]+'"'); continue; }
- if (ar[i]==WIDTH) { eval(pf+'width='+ar[++i]); continue; }
- if (ar[i]==BORDER) { eval(pf+'border='+ar[++i]); continue; }
- if (ar[i]==CELLPAD) { i=opt_MULTIPLEARGS(++i,ar,(pf+'cellpad')); continue; }
- if (ar[i]==STATUS) { eval(pf+"status='"+escSglQuote(ar[++i])+"'"); continue; }
- if (ar[i]==AUTOSTATUS) { eval(pf +'autostatus=('+pf+'autostatus == 1) ? 0 : 1'); continue; }
- if (ar[i]==AUTOSTATUSCAP) { eval(pf +'autostatus=('+pf+'autostatus == 2) ? 0 : 2'); continue; }
- if (ar[i]==HEIGHT) { eval(pf+'height='+pf+'aboveheight='+ar[++i]); continue; } // Same param again.
- if (ar[i]==CLOSETEXT) { eval(pf+"close='"+escSglQuote(ar[++i])+"'"); continue; }
- if (ar[i]==SNAPX) { eval(pf+'snapx='+ar[++i]); continue; }
- if (ar[i]==SNAPY) { eval(pf+'snapy='+ar[++i]); continue; }
- if (ar[i]==FIXX) { eval(pf+'fixx='+ar[++i]); continue; }
- if (ar[i]==FIXY) { eval(pf+'fixy='+ar[++i]); continue; }
- if (ar[i]==RELX) { eval(pf+'relx='+ar[++i]); continue; }
- if (ar[i]==RELY) { eval(pf+'rely='+ar[++i]); continue; }
- if (ar[i]==FGBACKGROUND) { eval(pf+'fgbackground="'+ar[++i]+'"'); continue; }
- if (ar[i]==BGBACKGROUND) { eval(pf+'bgbackground="'+ar[++i]+'"'); continue; }
- if (ar[i]==PADX) { eval(pf+'padxl='+ar[++i]); eval(pf+'padxr='+ar[++i]); continue; }
- if (ar[i]==PADY) { eval(pf+'padyt='+ar[++i]); eval(pf+'padyb='+ar[++i]); continue; }
- if (ar[i]==FULLHTML) { if (pf!='ol_') eval(pf+'fullhtml=1'); continue; }
- if (ar[i]==BELOW || ar[i]==ABOVE) { eval(pf+'vpos='+ar[i]); if (pf!='ol_') olVautoFlag=1; continue; }
- if (ar[i]==CAPICON) { eval(pf+'capicon="'+ar[++i]+'"'); continue; }
- if (ar[i]==TEXTFONT) { eval(pf+"textfont='"+escSglQuote(ar[++i])+"'"); continue; }
- if (ar[i]==CAPTIONFONT) { eval(pf+"captionfont='"+escSglQuote(ar[++i])+"'"); continue; }
- if (ar[i]==CLOSEFONT) { eval(pf+"closefont='"+escSglQuote(ar[++i])+"'"); continue; }
- if (ar[i]==TEXTSIZE) { eval(pf+'textsize="'+ar[++i]+'"'); continue; }
- if (ar[i]==CAPTIONSIZE) { eval(pf+'captionsize="'+ar[++i]+'"'); continue; }
- if (ar[i]==CLOSESIZE) { eval(pf+'closesize="'+ar[++i]+'"'); continue; }
- if (ar[i]==TIMEOUT) { eval(pf+'timeout='+ar[++i]); continue; }
- if (ar[i]==FUNCTION) { if (pf=='ol_') { if (typeof ar[i+1]!='number') { v=ar[++i]; ol_function=(typeof v=='function' ? v : null); }} else {fnMark = 0; v = null; if (typeof ar[i+1]!='number') v = ar[++i]; opt_FUNCTION(v); } continue; }
- if (ar[i]==DELAY) { eval(pf+'delay='+ar[++i]); continue; }
- if (ar[i]==HAUTO) { eval(pf+'hauto=('+pf+'hauto == 0) ? 1 : 0'); continue; }
- if (ar[i]==VAUTO) { eval(pf+'vauto=('+pf+'vauto == 0) ? 1 : 0'); continue; }
- if (ar[i]==CLOSECLICK) { eval(pf +'closeclick=('+pf+'closeclick == 0) ? 1 : 0'); continue; }
- if (ar[i]==WRAP) { eval(pf +'wrap=('+pf+'wrap == 0) ? 1 : 0'); continue; }
- if (ar[i]==FOLLOWMOUSE) { eval(pf +'followmouse=('+pf+'followmouse == 1) ? 0 : 1'); continue; }
- if (ar[i]==MOUSEOFF) { eval(pf +'mouseoff=('+pf+'mouseoff==0) ? 1 : 0'); v=ar[i+1]; if (pf != 'ol_' && eval(pf+'mouseoff') && typeof v == 'number' && (v < pmStart || v > pmUpper)) olHideDelay=ar[++i]; continue; }
- if (ar[i]==CLOSETITLE) { eval(pf+"closetitle='"+escSglQuote(ar[++i])+"'"); continue; }
- if (ar[i]==CSSOFF||ar[i]==CSSCLASS) { eval(pf+'css='+ar[i]); continue; }
- if (ar[i]==COMPATMODE) { eval(pf+'compatmode=('+pf+'compatmode==0) ? 1 : 0'); continue; }
- if (ar[i]==FGCLASS) { eval(pf+'fgclass="'+ar[++i]+'"'); continue; }
- if (ar[i]==BGCLASS) { eval(pf+'bgclass="'+ar[++i]+'"'); continue; }
- if (ar[i]==TEXTFONTCLASS) { eval(pf+'textfontclass="'+ar[++i]+'"'); continue; }
- if (ar[i]==CAPTIONFONTCLASS) { eval(pf+'captionfontclass="'+ar[++i]+'"'); continue; }
- if (ar[i]==CLOSEFONTCLASS) { eval(pf+'closefontclass="'+ar[++i]+'"'); continue; }
- i = parseCmdLine(pf, i, ar);
- }
- }
-
- if (fnMark && o3_function) o3_text = o3_function();
-
- if ((pf == 'o3_') && o3_wrap) {
- o3_width = 0;
-
- var tReg=/<.*\n*>/ig;
- if (!tReg.test(o3_text)) o3_text = o3_text.replace(/[ ]+/g, ' ');
- if (!tReg.test(o3_cap))o3_cap = o3_cap.replace(/[ ]+/g, ' ');
- }
- if ((pf == 'o3_') && o3_sticky) {
- if (!o3_close && (o3_frame != ol_frame)) o3_close = ol_close;
- if (o3_mouseoff && (o3_frame == ol_frame)) opt_NOCLOSE(' ');
- }
-}
-
-
-////////
-// LAYER FUNCTIONS
-////////
-
-// Writes to a layer
-function layerWrite(txt) {
- txt += "\n";
- if (olNs4) {
- var lyr = o3_frame.document.layers['overDiv'].document
- lyr.write(txt)
- lyr.close()
- } else if (typeof over.innerHTML != 'undefined') {
- if (olIe5 && isMac) over.innerHTML = '';
- over.innerHTML = txt;
- } else {
- range = o3_frame.document.createRange();
- range.setStartAfter(over);
- domfrag = range.createContextualFragment(txt);
-
- while (over.hasChildNodes()) {
- over.removeChild(over.lastChild);
- }
-
- over.appendChild(domfrag);
- }
-}
-
-// Make an object visible
-function showObject(obj) {
- runHook("showObject", FBEFORE);
-
- var theObj=(olNs4 ? obj : obj.style);
- theObj.visibility = 'visible';
-
- runHook("showObject", FAFTER);
-}
-
-// Hides an object
-function hideObject(obj) {
- runHook("hideObject", FBEFORE);
-
- var theObj=(olNs4 ? obj : obj.style);
- if (olNs6 && olShowId>0) { clearTimeout(olShowId); olShowId=0; }
- theObj.visibility = 'hidden';
- theObj.top = theObj.left = ((olIe4&&!olOp) ? 0 : -10000) + (!olNs4 ? 'px' : 0);
-
- if (o3_timerid > 0) clearTimeout(o3_timerid);
- if (o3_delayid > 0) clearTimeout(o3_delayid);
-
- o3_timerid = 0;
- o3_delayid = 0;
- self.status = "";
-
- if (obj.onmouseout||obj.onmouseover) {
- if (olNs4) obj.releaseEvents(Event.MOUSEOUT || Event.MOUSEOVER);
- obj.onmouseout = obj.onmouseover = null;
- }
-
- runHook("hideObject", FAFTER);
-}
-
-// Move a layer
-function repositionTo(obj, xL, yL) {
- var theObj=(olNs4 ? obj : obj.style);
- theObj.left = xL + (!olNs4 ? 'px' : 0);
- theObj.top = yL + (!olNs4 ? 'px' : 0);
-}
-
-// Check position of cursor relative to overDiv DIVision; mouseOut function
-function cursorOff() {
- var left = parseInt(over.style.left);
- var top = parseInt(over.style.top);
- var right = left + (over.offsetWidth >= parseInt(o3_width) ? over.offsetWidth : parseInt(o3_width));
- var bottom = top + (over.offsetHeight >= o3_aboveheight ? over.offsetHeight : o3_aboveheight);
-
- if (o3_x < left || o3_x > right || o3_y < top || o3_y > bottom) return true;
-
- return false;
-}
-
-
-////////
-// COMMAND FUNCTIONS
-////////
-
-// Calls callme or the default function.
-function opt_FUNCTION(callme) {
- o3_text = (callme ? (typeof callme=='string' ? (/.+\(.*\)/.test(callme) ? eval(callme) : callme) : callme()) : (o3_function ? o3_function() : 'No Function'));
-
- return 0;
-}
-
-// Handle hovering
-function opt_NOCLOSE(unused) {
- if (!unused) o3_close = "";
-
- if (olNs4) {
- over.captureEvents(Event.MOUSEOUT || Event.MOUSEOVER);
- over.onmouseover = function () { if (o3_timerid > 0) { clearTimeout(o3_timerid); o3_timerid = 0; } }
- over.onmouseout = function (e) { if (olHideDelay) hideDelay(olHideDelay); else cClick(e); }
- } else {
- over.onmouseover = function () {hoveringSwitch = true; if (o3_timerid > 0) { clearTimeout(o3_timerid); o3_timerid =0; } }
- }
-
- return 0;
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-
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-
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-
- k--; // reduce by one so the for loop this is in works correctly
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- eval(parameter + '="' + pV + '"');
-
- return k;
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-
-// Remove in texts when done.
-function nbspCleanup() {
- if (o3_wrap) {
- o3_text = o3_text.replace(/\ /g, ' ');
- o3_cap = o3_cap.replace(/\ /g, ' ');
- }
-}
-
-// Escape embedded single quotes in text strings
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-
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- var re = /\w+\(.*\)[;\s]+/g, olre = /overlib\(|nd\(|cClick\(/, fn, l, i;
-
- if(!olLoaded) olLoaded=1;
-
- // Remove it for Gecko based browsers
- if(window.removeEventListener && e.eventPhase == 3) window.removeEventListener("load",OLonLoad_handler,false);
- else if(window.detachEvent) { // and for IE and Opera 4.x but execute calls to overlib, nd, or cClick()
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- var fN = document.body.getAttribute('onload');
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') : '';
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- fontColor='o3_'+((whichString=='caption')? 'cap' : whichString)+'color';
- return (hasDims&&!olNs4) ? (isClose ? '' : '| BarcodeSequence | ||
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-Download Figure |
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-
-
-Download Figure |
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-
-Download Figure |
-
| day | ||
|---|---|---|
-
-
-Download Figure |
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-Download Figure |
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-
-Download Figure |
-
| days_since_epoch | ||
|---|---|---|
-
-
-Download Figure |
-
-
-
-Download Figure |
-
-
-
-Download Figure |
-
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'document.documentElement' : docRoot); -} - -// Add window onload handlers to indicate when all modules have been loaded -// For Netscape 6+ and Mozilla, uses addEventListener method on the window object -// For IE it uses the attachEvent method of the window object and for Netscape 4.x -// it sets the window.onload handler to the OLonload_handler function for Bubbling -if(window.addEventListener) window.addEventListener("load",OLonLoad_handler,false); -else if (window.attachEvent) window.attachEvent("onload",OLonLoad_handler); - -var capExtent; - -//////// -// PUBLIC FUNCTIONS -//////// - -// overlib(arg0,...,argN) -// Loads parameters into global runtime variables. -function overlib() { - if (!olLoaded || isExclusive(overlib.arguments)) return true; - if (olCheckMouseCapture) olMouseCapture(); - if (over) { - over = (typeof over.id != 'string') ? o3_frame.document.all['overDiv'] : over; - cClick(); - } - - // Load defaults to runtime. - olHideDelay=0; - o3_text=ol_text; - o3_cap=ol_cap; - o3_sticky=ol_sticky; - o3_background=ol_background; - o3_close=ol_close; - o3_hpos=ol_hpos; - o3_offsetx=ol_offsetx; - o3_offsety=ol_offsety; - o3_fgcolor=ol_fgcolor; - o3_bgcolor=ol_bgcolor; - o3_textcolor=ol_textcolor; - o3_capcolor=ol_capcolor; - o3_closecolor=ol_closecolor; - o3_width=ol_width; - o3_border=ol_border; - o3_cellpad=ol_cellpad; - o3_status=ol_status; - o3_autostatus=ol_autostatus; - o3_height=ol_height; - o3_snapx=ol_snapx; - o3_snapy=ol_snapy; - o3_fixx=ol_fixx; - o3_fixy=ol_fixy; - o3_relx=ol_relx; - o3_rely=ol_rely; - o3_fgbackground=ol_fgbackground; - o3_bgbackground=ol_bgbackground; - o3_padxl=ol_padxl; - o3_padxr=ol_padxr; - o3_padyt=ol_padyt; - o3_padyb=ol_padyb; - o3_fullhtml=ol_fullhtml; - o3_vpos=ol_vpos; - o3_aboveheight=ol_aboveheight; - o3_capicon=ol_capicon; - o3_textfont=ol_textfont; - o3_captionfont=ol_captionfont; - o3_closefont=ol_closefont; - o3_textsize=ol_textsize; - o3_captionsize=ol_captionsize; - o3_closesize=ol_closesize; - o3_timeout=ol_timeout; - o3_function=ol_function; - o3_delay=ol_delay; - o3_hauto=ol_hauto; - o3_vauto=ol_vauto; - o3_closeclick=ol_closeclick; - o3_wrap=ol_wrap; - o3_followmouse=ol_followmouse; - o3_mouseoff=ol_mouseoff; - o3_closetitle=ol_closetitle; - o3_css=ol_css; - o3_compatmode=ol_compatmode; - o3_fgclass=ol_fgclass; - o3_bgclass=ol_bgclass; - o3_textfontclass=ol_textfontclass; - o3_captionfontclass=ol_captionfontclass; - o3_closefontclass=ol_closefontclass; - - setRunTimeVariables(); - - fnRef = ''; - - // Special for frame support, over must be reset... - o3_frame = ol_frame; - - if(!(over=createDivContainer())) return false; - - parseTokens('o3_', overlib.arguments); - if (!postParseChecks()) return false; - - if (o3_delay == 0) { - return runHook("olMain", FREPLACE); - } else { - o3_delayid = setTimeout("runHook('olMain', FREPLACE)", o3_delay); - return false; - } -} - -// Clears popups if appropriate -function nd(time) { - if (olLoaded && !isExclusive()) { - hideDelay(time); // delay popup close if time specified - - if (o3_removecounter >= 1) { o3_showingsticky = 0 }; - - if (o3_showingsticky == 0) { - o3_allowmove = 0; - if (over != null && o3_timerid == 0) runHook("hideObject", FREPLACE, over); - } else { - o3_removecounter++; - } - } - - return true; -} - -// The Close onMouseOver function for stickies -function cClick() { - if (olLoaded) { - runHook("hideObject", FREPLACE, over); - o3_showingsticky = 0; - } - return false; -} - -// Method for setting page specific defaults. -function overlib_pagedefaults() { - parseTokens('ol_', overlib_pagedefaults.arguments); -} - - -//////// -// OVERLIB MAIN FUNCTION -//////// - -// This function decides what it is we want to display and how we want it done. -function olMain() { - var layerhtml, styleType; - runHook("olMain", FBEFORE); - - if (o3_background!="" || o3_fullhtml) { - // Use background instead of box. - layerhtml = runHook('ol_content_background', FALTERNATE, o3_css, o3_text, o3_background, o3_fullhtml); - } else { - // They want a popup box. - styleType = (pms[o3_css-1-pmStart] == "cssoff" || pms[o3_css-1-pmStart] == "cssclass"); - - // Prepare popup background - if (o3_fgbackground != "") o3_fgbackground = "background=\""+o3_fgbackground+"\""; - if (o3_bgbackground != "") o3_bgbackground = (styleType ? "background=\""+o3_bgbackground+"\"" : o3_bgbackground); - - // Prepare popup colors - if (o3_fgcolor != "") o3_fgcolor = (styleType ? "bgcolor=\""+o3_fgcolor+"\"" : o3_fgcolor); - if (o3_bgcolor != "") o3_bgcolor = (styleType ? "bgcolor=\""+o3_bgcolor+"\"" : o3_bgcolor); - - // Prepare popup height - if (o3_height > 0) o3_height = (styleType ? "height=\""+o3_height+"\"" : o3_height); - else o3_height = ""; - - // Decide which kinda box. - if (o3_cap=="") { - // Plain - layerhtml = runHook('ol_content_simple', FALTERNATE, o3_css, o3_text); - } else { - // With caption - if (o3_sticky) { - // Show close text - layerhtml = runHook('ol_content_caption', FALTERNATE, o3_css, o3_text, o3_cap, o3_close); - } else { - // No close text - layerhtml = runHook('ol_content_caption', FALTERNATE, o3_css, o3_text, o3_cap, ""); - } - } - } - - // We want it to stick! - if (o3_sticky) { - if (o3_timerid > 0) { - clearTimeout(o3_timerid); - o3_timerid = 0; - } - o3_showingsticky = 1; - o3_removecounter = 0; - } - - // Created a separate routine to generate the popup to make it easier - // to implement a plugin capability - if (!runHook("createPopup", FREPLACE, layerhtml)) return false; - - // Prepare status bar - if (o3_autostatus > 0) { - o3_status = o3_text; - if (o3_autostatus > 1) o3_status = o3_cap; - } - - // When placing the layer the first time, even stickies may be moved. - o3_allowmove = 0; - - // Initiate a timer for timeout - if (o3_timeout > 0) { - if (o3_timerid > 0) clearTimeout(o3_timerid); - o3_timerid = setTimeout("cClick()", o3_timeout); - } - - // Show layer - runHook("disp", FREPLACE, o3_status); - runHook("olMain", FAFTER); - - return (olOp && event && event.type == 'mouseover' && !o3_status) ? '' : (o3_status != ''); -} - -//////// -// LAYER GENERATION FUNCTIONS -//////// -// These functions just handle popup content with tags that should adhere to the W3C standards specification. - -// Makes simple table without caption -function ol_content_simple(text) { - var cpIsMultiple = /,/.test(o3_cellpad); - var txt = '
|
|
| '+(o3_textfontclass ? '' : wrapStr(0,o3_textsize,'text'))+text+(o3_textfontclass ? '' : wrapStr(1,o3_textsize))+' | ||
') : '';
- }
-}
-
-// Quotes Multi word font names; needed for CSS Standards adherence in font-family
-function quoteMultiNameFonts(theFont) {
- var v, pM=theFont.split(',');
- for (var i=0; i 0) clearTimeout(o3_timerid);
-
- o3_timerid=setTimeout("cClick()",(o3_timeout=time));
- }
-}
-
-// Was originally in the placeLayer() routine; separated out for future ease
-function horizontalPlacement(browserWidth, horizontalScrollAmount, widthFix) {
- var placeX, iwidth=browserWidth, winoffset=horizontalScrollAmount;
- var parsedWidth = parseInt(o3_width);
-
- if (o3_fixx > -1 || o3_relx != null) {
- // Fixed position
- placeX=(o3_relx != null ? ( o3_relx < 0 ? winoffset +o3_relx+ iwidth - parsedWidth - widthFix : winoffset+o3_relx) : o3_fixx);
- } else {
- // If HAUTO, decide what to use.
- if (o3_hauto == 1) {
- if ((o3_x - winoffset) > (iwidth / 2)) {
- o3_hpos = LEFT;
- } else {
- o3_hpos = RIGHT;
- }
- }
-
- // From mouse
- if (o3_hpos == CENTER) { // Center
- placeX = o3_x+o3_offsetx-(parsedWidth/2);
-
- if (placeX < winoffset) placeX = winoffset;
- }
-
- if (o3_hpos == RIGHT) { // Right
- placeX = o3_x+o3_offsetx;
-
- if ((placeX+parsedWidth) > (winoffset+iwidth - widthFix)) {
- placeX = iwidth+winoffset - parsedWidth - widthFix;
- if (placeX < 0) placeX = 0;
- }
- }
- if (o3_hpos == LEFT) { // Left
- placeX = o3_x-o3_offsetx-parsedWidth;
- if (placeX < winoffset) placeX = winoffset;
- }
-
- // Snapping!
- if (o3_snapx > 1) {
- var snapping = placeX % o3_snapx;
-
- if (o3_hpos == LEFT) {
- placeX = placeX - (o3_snapx+snapping);
- } else {
- // CENTER and RIGHT
- placeX = placeX+(o3_snapx - snapping);
- }
-
- if (placeX < winoffset) placeX = winoffset;
- }
- }
-
- return placeX;
-}
-
-// was originally in the placeLayer() routine; separated out for future ease
-function verticalPlacement(browserHeight,verticalScrollAmount) {
- var placeY, iheight=browserHeight, scrolloffset=verticalScrollAmount;
- var parsedHeight=(o3_aboveheight ? parseInt(o3_aboveheight) : (olNs4 ? over.clip.height : over.offsetHeight));
-
- if (o3_fixy > -1 || o3_rely != null) {
- // Fixed position
- placeY=(o3_rely != null ? (o3_rely < 0 ? scrolloffset+o3_rely+iheight - parsedHeight : scrolloffset+o3_rely) : o3_fixy);
- } else {
- // If VAUTO, decide what to use.
- if (o3_vauto == 1) {
- if ((o3_y - scrolloffset) > (iheight / 2) && o3_vpos == BELOW && (o3_y + parsedHeight + o3_offsety - (scrolloffset + iheight) > 0)) {
- o3_vpos = ABOVE;
- } else if (o3_vpos == ABOVE && (o3_y - (parsedHeight + o3_offsety) - scrolloffset < 0)) {
- o3_vpos = BELOW;
- }
- }
-
- // From mouse
- if (o3_vpos == ABOVE) {
- if (o3_aboveheight == 0) o3_aboveheight = parsedHeight;
-
- placeY = o3_y - (o3_aboveheight+o3_offsety);
- if (placeY < scrolloffset) placeY = scrolloffset;
- } else {
- // BELOW
- placeY = o3_y+o3_offsety;
- }
-
- // Snapping!
- if (o3_snapy > 1) {
- var snapping = placeY % o3_snapy;
-
- if (o3_aboveheight > 0 && o3_vpos == ABOVE) {
- placeY = placeY - (o3_snapy+snapping);
- } else {
- placeY = placeY+(o3_snapy - snapping);
- }
-
- if (placeY < scrolloffset) placeY = scrolloffset;
- }
- }
-
- return placeY;
-}
-
-// checks positioning flags
-function checkPositionFlags() {
- if (olHautoFlag) olHautoFlag = o3_hauto=0;
- if (olVautoFlag) olVautoFlag = o3_vauto=0;
- return true;
-}
-
-// get Browser window width
-function windowWidth() {
- var w;
- if (o3_frame.innerWidth) w=o3_frame.innerWidth;
- else if (eval('o3_frame.'+docRoot)&&eval("typeof o3_frame."+docRoot+".clientWidth=='number'")&&eval('o3_frame.'+docRoot+'.clientWidth'))
- w=eval('o3_frame.'+docRoot+'.clientWidth');
- return w;
-}
-
-// create the div container for popup content if it doesn't exist
-function createDivContainer(id,frm,zValue) {
- id = (id || 'overDiv'), frm = (frm || o3_frame), zValue = (zValue || 1000);
- var objRef, divContainer = layerReference(id);
-
- if (divContainer == null) {
- if (olNs4) {
- divContainer = frm.document.layers[id] = new Layer(window.innerWidth, frm);
- objRef = divContainer;
- } else {
- var body = (olIe4 ? frm.document.all.tags('BODY')[0] : frm.document.getElementsByTagName("BODY")[0]);
- if (olIe4&&!document.getElementById) {
- body.insertAdjacentHTML("beforeEnd",'');
- divContainer=layerReference(id);
- } else {
- divContainer = frm.document.createElement("DIV");
- divContainer.id = id;
- body.appendChild(divContainer);
- }
- objRef = divContainer.style;
- }
-
- objRef.position = 'absolute';
- objRef.visibility = 'hidden';
- objRef.zIndex = zValue;
- if (olIe4&&!olOp) objRef.left = objRef.top = '0px';
- else objRef.left = objRef.top = -10000 + (!olNs4 ? 'px' : 0);
- }
-
- return divContainer;
-}
-
-// get reference to a layer with ID=id
-function layerReference(id) {
- return (olNs4 ? o3_frame.document.layers[id] : (document.all ? o3_frame.document.all[id] : o3_frame.document.getElementById(id)));
-}
-////////
-// UTILITY FUNCTIONS
-////////
-
-// Checks if something is a function.
-function isFunction(fnRef) {
- var rtn = true;
-
- if (typeof fnRef == 'object') {
- for (var i = 0; i < fnRef.length; i++) {
- if (typeof fnRef[i]=='function') continue;
- rtn = false;
- break;
- }
- } else if (typeof fnRef != 'function') {
- rtn = false;
- }
-
- return rtn;
-}
-
-// Converts an array into an argument string for use in eval.
-function argToString(array, strtInd, argName) {
- var jS = strtInd, aS = '', ar = array;
- argName=(argName ? argName : 'ar');
-
- if (ar.length > jS) {
- for (var k = jS; k < ar.length; k++) aS += argName+'['+k+'], ';
- aS = aS.substring(0, aS.length-2);
- }
-
- return aS;
-}
-
-// Places a hook in the correct position in a hook point.
-function reOrder(hookPt, fnRef, order) {
- var newPt = new Array(), match, i, j;
-
- if (!order || typeof order == 'undefined' || typeof order == 'number') return hookPt;
-
- if (typeof order=='function') {
- if (typeof fnRef=='object') {
- newPt = newPt.concat(fnRef);
- } else {
- newPt[newPt.length++]=fnRef;
- }
-
- for (i = 0; i < hookPt.length; i++) {
- match = false;
- if (typeof fnRef == 'function' && hookPt[i] == fnRef) {
- continue;
- } else {
- for(j = 0; j < fnRef.length; j++) if (hookPt[i] == fnRef[j]) {
- match = true;
- break;
- }
- }
- if (!match) newPt[newPt.length++] = hookPt[i];
- }
-
- newPt[newPt.length++] = order;
-
- } else if (typeof order == 'object') {
- if (typeof fnRef == 'object') {
- newPt = newPt.concat(fnRef);
- } else {
- newPt[newPt.length++] = fnRef;
- }
-
- for (j = 0; j < hookPt.length; j++) {
- match = false;
- if (typeof fnRef == 'function' && hookPt[j] == fnRef) {
- continue;
- } else {
- for (i = 0; i < fnRef.length; i++) if (hookPt[j] == fnRef[i]) {
- match = true;
- break;
- }
- }
- if (!match) newPt[newPt.length++]=hookPt[j];
- }
-
- for (i = 0; i < newPt.length; i++) hookPt[i] = newPt[i];
- newPt.length = 0;
-
- for (j = 0; j < hookPt.length; j++) {
- match = false;
- for (i = 0; i < order.length; i++) {
- if (hookPt[j] == order[i]) {
- match = true;
- break;
- }
- }
- if (!match) newPt[newPt.length++] = hookPt[j];
- }
- newPt = newPt.concat(order);
- }
-
- hookPt = newPt;
-
- return hookPt;
-}
-
-////////
-// PLUGIN ACTIVATION FUNCTIONS
-////////
-
-// Runs plugin functions to set runtime variables.
-function setRunTimeVariables(){
- if (typeof runTime != 'undefined' && runTime.length) {
- for (var k = 0; k < runTime.length; k++) {
- runTime[k]();
- }
- }
-}
-
-// Runs plugin functions to parse commands.
-function parseCmdLine(pf, i, args) {
- if (typeof cmdLine != 'undefined' && cmdLine.length) {
- for (var k = 0; k < cmdLine.length; k++) {
- var j = cmdLine[k](pf, i, args);
- if (j >- 1) {
- i = j;
- break;
- }
- }
- }
-
- return i;
-}
-
-// Runs plugin functions to do things after parse.
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diff --git a/core_diversity_analyses/core_output/bdiv_even20/unweighted_unifrac_2d_discrete/unweighted_unifrac_pc_2D_PCoA_plots.html b/core_diversity_analyses/core_output/bdiv_even20/unweighted_unifrac_2d_discrete/unweighted_unifrac_pc_2D_PCoA_plots.html
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--- a/core_diversity_analyses/core_output/bdiv_even20/unweighted_unifrac_2d_discrete/unweighted_unifrac_pc_2D_PCoA_plots.html
+++ /dev/null
@@ -1,215 +0,0 @@
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-
-
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-
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- o3_timerid=setTimeout("cClick()",(o3_timeout=time));
- }
-}
-
-// Was originally in the placeLayer() routine; separated out for future ease
-function horizontalPlacement(browserWidth, horizontalScrollAmount, widthFix) {
- var placeX, iwidth=browserWidth, winoffset=horizontalScrollAmount;
- var parsedWidth = parseInt(o3_width);
-
- if (o3_fixx > -1 || o3_relx != null) {
- // Fixed position
- placeX=(o3_relx != null ? ( o3_relx < 0 ? winoffset +o3_relx+ iwidth - parsedWidth - widthFix : winoffset+o3_relx) : o3_fixx);
- } else {
- // If HAUTO, decide what to use.
- if (o3_hauto == 1) {
- if ((o3_x - winoffset) > (iwidth / 2)) {
- o3_hpos = LEFT;
- } else {
- o3_hpos = RIGHT;
- }
- }
-
- // From mouse
- if (o3_hpos == CENTER) { // Center
- placeX = o3_x+o3_offsetx-(parsedWidth/2);
-
- if (placeX < winoffset) placeX = winoffset;
- }
-
- if (o3_hpos == RIGHT) { // Right
- placeX = o3_x+o3_offsetx;
-
- if ((placeX+parsedWidth) > (winoffset+iwidth - widthFix)) {
- placeX = iwidth+winoffset - parsedWidth - widthFix;
- if (placeX < 0) placeX = 0;
- }
- }
- if (o3_hpos == LEFT) { // Left
- placeX = o3_x-o3_offsetx-parsedWidth;
- if (placeX < winoffset) placeX = winoffset;
- }
-
- // Snapping!
- if (o3_snapx > 1) {
- var snapping = placeX % o3_snapx;
-
- if (o3_hpos == LEFT) {
- placeX = placeX - (o3_snapx+snapping);
- } else {
- // CENTER and RIGHT
- placeX = placeX+(o3_snapx - snapping);
- }
-
- if (placeX < winoffset) placeX = winoffset;
- }
- }
-
- return placeX;
-}
-
-// was originally in the placeLayer() routine; separated out for future ease
-function verticalPlacement(browserHeight,verticalScrollAmount) {
- var placeY, iheight=browserHeight, scrolloffset=verticalScrollAmount;
- var parsedHeight=(o3_aboveheight ? parseInt(o3_aboveheight) : (olNs4 ? over.clip.height : over.offsetHeight));
-
- if (o3_fixy > -1 || o3_rely != null) {
- // Fixed position
- placeY=(o3_rely != null ? (o3_rely < 0 ? scrolloffset+o3_rely+iheight - parsedHeight : scrolloffset+o3_rely) : o3_fixy);
- } else {
- // If VAUTO, decide what to use.
- if (o3_vauto == 1) {
- if ((o3_y - scrolloffset) > (iheight / 2) && o3_vpos == BELOW && (o3_y + parsedHeight + o3_offsety - (scrolloffset + iheight) > 0)) {
- o3_vpos = ABOVE;
- } else if (o3_vpos == ABOVE && (o3_y - (parsedHeight + o3_offsety) - scrolloffset < 0)) {
- o3_vpos = BELOW;
- }
- }
-
- // From mouse
- if (o3_vpos == ABOVE) {
- if (o3_aboveheight == 0) o3_aboveheight = parsedHeight;
-
- placeY = o3_y - (o3_aboveheight+o3_offsety);
- if (placeY < scrolloffset) placeY = scrolloffset;
- } else {
- // BELOW
- placeY = o3_y+o3_offsety;
- }
-
- // Snapping!
- if (o3_snapy > 1) {
- var snapping = placeY % o3_snapy;
-
- if (o3_aboveheight > 0 && o3_vpos == ABOVE) {
- placeY = placeY - (o3_snapy+snapping);
- } else {
- placeY = placeY+(o3_snapy - snapping);
- }
-
- if (placeY < scrolloffset) placeY = scrolloffset;
- }
- }
-
- return placeY;
-}
-
-// checks positioning flags
-function checkPositionFlags() {
- if (olHautoFlag) olHautoFlag = o3_hauto=0;
- if (olVautoFlag) olVautoFlag = o3_vauto=0;
- return true;
-}
-
-// get Browser window width
-function windowWidth() {
- var w;
- if (o3_frame.innerWidth) w=o3_frame.innerWidth;
- else if (eval('o3_frame.'+docRoot)&&eval("typeof o3_frame."+docRoot+".clientWidth=='number'")&&eval('o3_frame.'+docRoot+'.clientWidth'))
- w=eval('o3_frame.'+docRoot+'.clientWidth');
- return w;
-}
-
-// create the div container for popup content if it doesn't exist
-function createDivContainer(id,frm,zValue) {
- id = (id || 'overDiv'), frm = (frm || o3_frame), zValue = (zValue || 1000);
- var objRef, divContainer = layerReference(id);
-
- if (divContainer == null) {
- if (olNs4) {
- divContainer = frm.document.layers[id] = new Layer(window.innerWidth, frm);
- objRef = divContainer;
- } else {
- var body = (olIe4 ? frm.document.all.tags('BODY')[0] : frm.document.getElementsByTagName("BODY")[0]);
- if (olIe4&&!document.getElementById) {
- body.insertAdjacentHTML("beforeEnd",'');
- divContainer=layerReference(id);
- } else {
- divContainer = frm.document.createElement("DIV");
- divContainer.id = id;
- body.appendChild(divContainer);
- }
- objRef = divContainer.style;
- }
-
- objRef.position = 'absolute';
- objRef.visibility = 'hidden';
- objRef.zIndex = zValue;
- if (olIe4&&!olOp) objRef.left = objRef.top = '0px';
- else objRef.left = objRef.top = -10000 + (!olNs4 ? 'px' : 0);
- }
-
- return divContainer;
-}
-
-// get reference to a layer with ID=id
-function layerReference(id) {
- return (olNs4 ? o3_frame.document.layers[id] : (document.all ? o3_frame.document.all[id] : o3_frame.document.getElementById(id)));
-}
-////////
-// UTILITY FUNCTIONS
-////////
-
-// Checks if something is a function.
-function isFunction(fnRef) {
- var rtn = true;
-
- if (typeof fnRef == 'object') {
- for (var i = 0; i < fnRef.length; i++) {
- if (typeof fnRef[i]=='function') continue;
- rtn = false;
- break;
- }
- } else if (typeof fnRef != 'function') {
- rtn = false;
- }
-
- return rtn;
-}
-
-// Converts an array into an argument string for use in eval.
-function argToString(array, strtInd, argName) {
- var jS = strtInd, aS = '', ar = array;
- argName=(argName ? argName : 'ar');
-
- if (ar.length > jS) {
- for (var k = jS; k < ar.length; k++) aS += argName+'['+k+'], ';
- aS = aS.substring(0, aS.length-2);
- }
-
- return aS;
-}
-
-// Places a hook in the correct position in a hook point.
-function reOrder(hookPt, fnRef, order) {
- var newPt = new Array(), match, i, j;
-
- if (!order || typeof order == 'undefined' || typeof order == 'number') return hookPt;
-
- if (typeof order=='function') {
- if (typeof fnRef=='object') {
- newPt = newPt.concat(fnRef);
- } else {
- newPt[newPt.length++]=fnRef;
- }
-
- for (i = 0; i < hookPt.length; i++) {
- match = false;
- if (typeof fnRef == 'function' && hookPt[i] == fnRef) {
- continue;
- } else {
- for(j = 0; j < fnRef.length; j++) if (hookPt[i] == fnRef[j]) {
- match = true;
- break;
- }
- }
- if (!match) newPt[newPt.length++] = hookPt[i];
- }
-
- newPt[newPt.length++] = order;
-
- } else if (typeof order == 'object') {
- if (typeof fnRef == 'object') {
- newPt = newPt.concat(fnRef);
- } else {
- newPt[newPt.length++] = fnRef;
- }
-
- for (j = 0; j < hookPt.length; j++) {
- match = false;
- if (typeof fnRef == 'function' && hookPt[j] == fnRef) {
- continue;
- } else {
- for (i = 0; i < fnRef.length; i++) if (hookPt[j] == fnRef[i]) {
- match = true;
- break;
- }
- }
- if (!match) newPt[newPt.length++]=hookPt[j];
- }
-
- for (i = 0; i < newPt.length; i++) hookPt[i] = newPt[i];
- newPt.length = 0;
-
- for (j = 0; j < hookPt.length; j++) {
- match = false;
- for (i = 0; i < order.length; i++) {
- if (hookPt[j] == order[i]) {
- match = true;
- break;
- }
- }
- if (!match) newPt[newPt.length++] = hookPt[j];
- }
- newPt = newPt.concat(order);
- }
-
- hookPt = newPt;
-
- return hookPt;
-}
-
-////////
-// PLUGIN ACTIVATION FUNCTIONS
-////////
-
-// Runs plugin functions to set runtime variables.
-function setRunTimeVariables(){
- if (typeof runTime != 'undefined' && runTime.length) {
- for (var k = 0; k < runTime.length; k++) {
- runTime[k]();
- }
- }
-}
-
-// Runs plugin functions to parse commands.
-function parseCmdLine(pf, i, args) {
- if (typeof cmdLine != 'undefined' && cmdLine.length) {
- for (var k = 0; k < cmdLine.length; k++) {
- var j = cmdLine[k](pf, i, args);
- if (j >- 1) {
- i = j;
- break;
- }
- }
- }
-
- return i;
-}
-
-// Runs plugin functions to do things after parse.
-function postParseChecks(pf,args){
- if (typeof postParse != 'undefined' && postParse.length) {
- for (var k = 0; k < postParse.length; k++) {
- if (postParse[k](pf,args)) continue;
- return false; // end now since have an error
- }
- }
- return true;
-}
-
-
-////////
-// PLUGIN REGISTRATION FUNCTIONS
-////////
-
-// Registers commands and creates constants.
-function registerCommands(cmdStr) {
- if (typeof cmdStr!='string') return;
-
- var pM = cmdStr.split(',');
- pms = pms.concat(pM);
-
- for (var i = 0; i< pM.length; i++) {
- eval(pM[i].toUpperCase()+'='+pmCount++);
- }
-}
-
-// Registers no-parameter commands
-function registerNoParameterCommands(cmdStr) {
- if (!cmdStr && typeof cmdStr != 'string') return;
- pmt=(!pmt) ? cmdStr : pmt + ',' + cmdStr;
-}
-
-// Register a function to hook at a certain point.
-function registerHook(fnHookTo, fnRef, hookType, optPm) {
- var hookPt, last = typeof optPm;
-
- if (fnHookTo == 'plgIn'||fnHookTo == 'postParse') return;
- if (typeof hookPts[fnHookTo] == 'undefined') hookPts[fnHookTo] = new FunctionReference();
-
- hookPt = hookPts[fnHookTo];
-
- if (hookType != null) {
- if (hookType == FREPLACE) {
- hookPt.ovload = fnRef; // replace normal overlib routine
- if (fnHookTo.indexOf('ol_content_') > -1) hookPt.alt[pms[CSSOFF-1-pmStart]]=fnRef;
-
- } else if (hookType == FBEFORE || hookType == FAFTER) {
- var hookPt=(hookType == 1 ? hookPt.before : hookPt.after);
-
- if (typeof fnRef == 'object') {
- hookPt = hookPt.concat(fnRef);
- } else {
- hookPt[hookPt.length++] = fnRef;
- }
-
- if (optPm) hookPt = reOrder(hookPt, fnRef, optPm);
-
- } else if (hookType == FALTERNATE) {
- if (last=='number') hookPt.alt[pms[optPm-1-pmStart]] = fnRef;
- } else if (hookType == FCHAIN) {
- hookPt = hookPt.chain;
- if (typeof fnRef=='object') hookPt=hookPt.concat(fnRef); // add other functions
- else hookPt[hookPt.length++]=fnRef;
- }
-
- return;
- }
-}
-
-// Register a function that will set runtime variables.
-function registerRunTimeFunction(fn) {
- if (isFunction(fn)) {
- if (typeof fn == 'object') {
- runTime = runTime.concat(fn);
- } else {
- runTime[runTime.length++] = fn;
- }
- }
-}
-
-// Register a function that will handle command parsing.
-function registerCmdLineFunction(fn){
- if (isFunction(fn)) {
- if (typeof fn == 'object') {
- cmdLine = cmdLine.concat(fn);
- } else {
- cmdLine[cmdLine.length++] = fn;
- }
- }
-}
-
-// Register a function that does things after command parsing.
-function registerPostParseFunction(fn){
- if (isFunction(fn)) {
- if (typeof fn == 'object') {
- postParse = postParse.concat(fn);
- } else {
- postParse[postParse.length++] = fn;
- }
- }
-}
-
-////////
-// PLUGIN REGISTRATION FUNCTIONS
-////////
-
-// Runs any hooks registered.
-function runHook(fnHookTo, hookType) {
- var l = hookPts[fnHookTo], k, rtnVal = null, optPm, arS, ar = runHook.arguments;
-
- if (hookType == FREPLACE) {
- arS = argToString(ar, 2);
-
- if (typeof l == 'undefined' || !(l = l.ovload)) rtnVal = eval(fnHookTo+'('+arS+')');
- else rtnVal = eval('l('+arS+')');
-
- } else if (hookType == FBEFORE || hookType == FAFTER) {
- if (typeof l != 'undefined') {
- l=(hookType == 1 ? l.before : l.after);
-
- if (l.length) {
- arS = argToString(ar, 2);
- for (var k = 0; k < l.length; k++) eval('l[k]('+arS+')');
- }
- }
- } else if (hookType == FALTERNATE) {
- optPm = ar[2];
- arS = argToString(ar, 3);
-
- if (typeof l == 'undefined' || (l = l.alt[pms[optPm-1-pmStart]]) == 'undefined') {
- rtnVal = eval(fnHookTo+'('+arS+')');
- } else {
- rtnVal = eval('l('+arS+')');
- }
- } else if (hookType == FCHAIN) {
- arS=argToString(ar,2);
- l=l.chain;
-
- for (k=l.length; k > 0; k--) if((rtnVal=eval('l[k-1]('+arS+')'))!=void(0)) break;
- }
-
- return rtnVal;
-}
-
-////////
-// OBJECT CONSTRUCTORS
-////////
-
-// Object for handling hooks.
-function FunctionReference() {
- this.ovload = null;
- this.before = new Array();
- this.after = new Array();
- this.alt = new Array();
- this.chain = new Array();
-}
-
-// Object for simple access to the overLIB version used.
-// Examples: simpleversion:351 major:3 minor:5 revision:1
-function Info(version, prerelease) {
- this.version = version;
- this.prerelease = prerelease;
-
- this.simpleversion = Math.round(this.version*100);
- this.major = parseInt(this.simpleversion / 100);
- this.minor = parseInt(this.simpleversion / 10) - this.major * 10;
- this.revision = parseInt(this.simpleversion) - this.major * 100 - this.minor * 10;
- this.meets = meets;
-}
-
-// checks for Core Version required
-function meets(reqdVersion) {
- return (!reqdVersion) ? false : this.simpleversion >= Math.round(100*parseFloat(reqdVersion));
-}
-
-
-////////
-// STANDARD REGISTRATIONS
-////////
-registerHook("ol_content_simple", ol_content_simple, FALTERNATE, CSSOFF);
-registerHook("ol_content_caption", ol_content_caption, FALTERNATE, CSSOFF);
-registerHook("ol_content_background", ol_content_background, FALTERNATE, CSSOFF);
-registerHook("ol_content_simple", ol_content_simple, FALTERNATE, CSSCLASS);
-registerHook("ol_content_caption", ol_content_caption, FALTERNATE, CSSCLASS);
-registerHook("ol_content_background", ol_content_background, FALTERNATE, CSSCLASS);
-registerPostParseFunction(checkPositionFlags);
-registerHook("hideObject", nbspCleanup, FAFTER);
-registerHook("horizontalPlacement", horizontalPlacement, FCHAIN);
-registerHook("verticalPlacement", verticalPlacement, FCHAIN);
-if (olNs4||(olIe5&&isMac)||olKq) olLoaded=1;
-registerNoParameterCommands('sticky,autostatus,autostatuscap,fullhtml,hauto,vauto,closeclick,wrap,followmouse,mouseoff,compatmode');
-///////
-// ESTABLISH MOUSECAPTURING
-///////
-
-// Capture events, alt. diffuses the overlib function.
-var olCheckMouseCapture=true;
-if ((olNs4 || olNs6 || olIe4)) {
- olMouseCapture();
-} else {
- overlib = no_overlib;
- nd = no_overlib;
- ver3fix = true;
-}
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Please give credit on sites that -//\ use overLIB and submit changes of the script so other people can use -//\ them as well. -// $Revision: 1.1 $ $Date: 2009/07/14 16:51:16 $ -//\///// -//\mini - -//////// -// PRE-INIT -// Ignore these lines, configuration is below. -//////// -var olLoaded = 0;var pmStart = 10000000; var pmUpper = 10001000; var pmCount = pmStart+1; var pmt=''; var pms = new Array(); var olInfo = new Info('4.21', 1); -var FREPLACE = 0; var FBEFORE = 1; var FAFTER = 2; var FALTERNATE = 3; var FCHAIN=4; -var olHideForm=0; // parameter for hiding SELECT and ActiveX elements in IE5.5+ -var olHautoFlag = 0; // flags for over-riding VAUTO and HAUTO if corresponding -var olVautoFlag = 0; // positioning commands are used on the command line -var hookPts = new Array(), postParse = new Array(), cmdLine = new Array(), runTime = new Array(); -// for plugins -registerCommands('donothing,inarray,caparray,sticky,background,noclose,caption,left,right,center,offsetx,offsety,fgcolor,bgcolor,textcolor,capcolor,closecolor,width,border,cellpad,status,autostatus,autostatuscap,height,closetext,snapx,snapy,fixx,fixy,relx,rely,fgbackground,bgbackground,padx,pady,fullhtml,above,below,capicon,textfont,captionfont,closefont,textsize,captionsize,closesize,timeout,function,delay,hauto,vauto,closeclick,wrap,followmouse,mouseoff,closetitle,cssoff,compatmode,cssclass,fgclass,bgclass,textfontclass,captionfontclass,closefontclass'); - -//////// -// DEFAULT CONFIGURATION -// Settings you want everywhere are set here. All of this can also be -// changed on your html page or through an overLIB call. -//////// -if (typeof ol_fgcolor=='undefined') var ol_fgcolor="#CCCCFF"; -if (typeof ol_bgcolor=='undefined') var ol_bgcolor="#333399"; -if (typeof ol_textcolor=='undefined') var ol_textcolor="#000000"; -if (typeof ol_capcolor=='undefined') var ol_capcolor="#FFFFFF"; -if (typeof ol_closecolor=='undefined') var ol_closecolor="#9999FF"; -if (typeof ol_textfont=='undefined') var ol_textfont="Verdana,Arial,Helvetica"; -if (typeof ol_captionfont=='undefined') var ol_captionfont="Verdana,Arial,Helvetica"; -if (typeof ol_closefont=='undefined') var ol_closefont="Verdana,Arial,Helvetica"; -if (typeof ol_textsize=='undefined') var ol_textsize="1"; -if (typeof ol_captionsize=='undefined') var ol_captionsize="1"; -if (typeof ol_closesize=='undefined') var ol_closesize="1"; -if (typeof ol_width=='undefined') var ol_width="200"; -if (typeof ol_border=='undefined') var ol_border="1"; -if (typeof ol_cellpad=='undefined') var ol_cellpad=2; -if (typeof ol_offsetx=='undefined') var ol_offsetx=10; -if (typeof ol_offsety=='undefined') var ol_offsety=10; -if (typeof ol_text=='undefined') var ol_text="Default Text"; -if (typeof ol_cap=='undefined') var ol_cap=""; -if (typeof ol_sticky=='undefined') var ol_sticky=0; -if (typeof ol_background=='undefined') var ol_background=""; -if (typeof ol_close=='undefined') var ol_close="Close"; -if (typeof ol_hpos=='undefined') var ol_hpos=RIGHT; -if (typeof ol_status=='undefined') var ol_status=""; -if (typeof ol_autostatus=='undefined') var ol_autostatus=0; -if (typeof ol_height=='undefined') var ol_height=-1; -if (typeof ol_snapx=='undefined') var ol_snapx=0; -if (typeof ol_snapy=='undefined') var ol_snapy=0; -if (typeof ol_fixx=='undefined') var ol_fixx=-1; -if (typeof ol_fixy=='undefined') var ol_fixy=-1; -if (typeof ol_relx=='undefined') var ol_relx=null; -if (typeof ol_rely=='undefined') var ol_rely=null; -if (typeof ol_fgbackground=='undefined') var ol_fgbackground=""; -if (typeof ol_bgbackground=='undefined') var ol_bgbackground=""; -if (typeof ol_padxl=='undefined') var ol_padxl=1; -if (typeof ol_padxr=='undefined') var ol_padxr=1; -if (typeof ol_padyt=='undefined') var ol_padyt=1; -if (typeof ol_padyb=='undefined') var ol_padyb=1; -if (typeof ol_fullhtml=='undefined') var ol_fullhtml=0; -if (typeof ol_vpos=='undefined') var ol_vpos=BELOW; -if (typeof ol_aboveheight=='undefined') var ol_aboveheight=0; -if (typeof ol_capicon=='undefined') var ol_capicon=""; -if (typeof ol_frame=='undefined') var ol_frame=self; -if (typeof ol_timeout=='undefined') var ol_timeout=0; -if (typeof ol_function=='undefined') var ol_function=null; -if (typeof ol_delay=='undefined') var ol_delay=0; -if (typeof ol_hauto=='undefined') var ol_hauto=0; -if (typeof ol_vauto=='undefined') var ol_vauto=0; -if (typeof ol_closeclick=='undefined') var ol_closeclick=0; -if (typeof ol_wrap=='undefined') var ol_wrap=0; -if (typeof ol_followmouse=='undefined') var ol_followmouse=1; -if (typeof ol_mouseoff=='undefined') var ol_mouseoff=0; -if (typeof ol_closetitle=='undefined') var ol_closetitle='Close'; -if (typeof ol_compatmode=='undefined') var ol_compatmode=0; -if (typeof ol_css=='undefined') var ol_css=CSSOFF; -if (typeof ol_fgclass=='undefined') var ol_fgclass=""; -if (typeof ol_bgclass=='undefined') var ol_bgclass=""; -if (typeof ol_textfontclass=='undefined') var ol_textfontclass=""; -if (typeof ol_captionfontclass=='undefined') var ol_captionfontclass=""; -if (typeof ol_closefontclass=='undefined') var ol_closefontclass=""; - -//////// -// ARRAY CONFIGURATION -//////// - -// You can use these arrays to store popup text here instead of in the html. -if (typeof ol_texts=='undefined') var ol_texts = new Array("Text 0", "Text 1"); -if (typeof ol_caps=='undefined') var ol_caps = new Array("Caption 0", "Caption 1"); - -//////// -// END OF CONFIGURATION -// Don't change anything below this line, all configuration is above. -//////// - - - - - -//////// -// INIT -//////// -// Runtime variables init. Don't change for config! -var o3_text=""; -var o3_cap=""; -var o3_sticky=0; -var o3_background=""; -var o3_close="Close"; -var o3_hpos=RIGHT; -var o3_offsetx=2; -var o3_offsety=2; -var o3_fgcolor=""; -var o3_bgcolor=""; -var o3_textcolor=""; -var o3_capcolor=""; -var o3_closecolor=""; -var o3_width=100; -var o3_border=1; -var o3_cellpad=2; -var o3_status=""; -var o3_autostatus=0; -var o3_height=-1; -var o3_snapx=0; -var o3_snapy=0; -var o3_fixx=-1; -var o3_fixy=-1; -var o3_relx=null; -var o3_rely=null; -var o3_fgbackground=""; -var o3_bgbackground=""; -var o3_padxl=0; -var o3_padxr=0; -var o3_padyt=0; -var o3_padyb=0; -var o3_fullhtml=0; -var o3_vpos=BELOW; -var o3_aboveheight=0; -var o3_capicon=""; -var o3_textfont="Verdana,Arial,Helvetica"; -var o3_captionfont="Verdana,Arial,Helvetica"; -var o3_closefont="Verdana,Arial,Helvetica"; -var o3_textsize="1"; -var o3_captionsize="1"; -var o3_closesize="1"; -var o3_frame=self; -var o3_timeout=0; -var o3_timerid=0; -var o3_allowmove=0; -var o3_function=null; -var o3_delay=0; -var o3_delayid=0; -var o3_hauto=0; -var o3_vauto=0; -var o3_closeclick=0; -var o3_wrap=0; -var o3_followmouse=1; -var o3_mouseoff=0; -var o3_closetitle=''; -var o3_compatmode=0; -var o3_css=CSSOFF; -var o3_fgclass=""; -var o3_bgclass=""; -var o3_textfontclass=""; -var o3_captionfontclass=""; -var o3_closefontclass=""; - -// Display state variables -var o3_x = 0; -var o3_y = 0; -var o3_showingsticky = 0; -var o3_removecounter = 0; - -// Our layer -var over = null; -var fnRef, hoveringSwitch = false; -var olHideDelay; - -// Decide browser version -var isMac = (navigator.userAgent.indexOf("Mac") != -1); -var olOp = (navigator.userAgent.toLowerCase().indexOf('opera') > -1 && document.createTextNode); // Opera 7 -var olNs4 = (navigator.appName=='Netscape' && parseInt(navigator.appVersion) == 4); -var olNs6 = (document.getElementById) ? true : false; -var olKq = (olNs6 && /konqueror/i.test(navigator.userAgent)); -var olIe4 = (document.all) ? true : false; -var olIe5 = false; -var olIe55 = false; // Added additional variable to identify IE5.5+ -var docRoot = 'document.body'; - -// Resize fix for NS4.x to keep track of layer -if (olNs4) { - var oW = window.innerWidth; - var oH = window.innerHeight; - window.onresize = function() { if (oW != window.innerWidth || oH != window.innerHeight) location.reload(); } -} - -// Microsoft Stupidity Check(tm). -if (olIe4) { - var agent = navigator.userAgent; - if (/MSIE/.test(agent)) { - var versNum = parseFloat(agent.match(/MSIE[ ](\d\.\d+)\.*/i)[1]); - if (versNum >= 5){ - olIe5=true; - olIe55=(versNum>=5.5&&!olOp) ? true : false; - if (olNs6) olNs6=false; - } - } - if (olNs6) olIe4 = false; -} - -// Check for compatability mode. -if (document.compatMode && document.compatMode == 'CSS1Compat') { - docRoot= ((olIe4 && !olOp) ? 'document.documentElement' : docRoot); -} - -// Add window onload handlers to indicate when all modules have been loaded -// For Netscape 6+ and Mozilla, uses addEventListener method on the window object -// For IE it uses the attachEvent method of the window object and for Netscape 4.x -// it sets the window.onload handler to the OLonload_handler function for Bubbling -if(window.addEventListener) window.addEventListener("load",OLonLoad_handler,false); -else if (window.attachEvent) window.attachEvent("onload",OLonLoad_handler); - -var capExtent; - -//////// -// PUBLIC FUNCTIONS -//////// - -// overlib(arg0,...,argN) -// Loads parameters into global runtime variables. -function overlib() { - if (!olLoaded || isExclusive(overlib.arguments)) return true; - if (olCheckMouseCapture) olMouseCapture(); - if (over) { - over = (typeof over.id != 'string') ? o3_frame.document.all['overDiv'] : over; - cClick(); - } - - // Load defaults to runtime. - olHideDelay=0; - o3_text=ol_text; - o3_cap=ol_cap; - o3_sticky=ol_sticky; - o3_background=ol_background; - o3_close=ol_close; - o3_hpos=ol_hpos; - o3_offsetx=ol_offsetx; - o3_offsety=ol_offsety; - o3_fgcolor=ol_fgcolor; - o3_bgcolor=ol_bgcolor; - o3_textcolor=ol_textcolor; - o3_capcolor=ol_capcolor; - o3_closecolor=ol_closecolor; - o3_width=ol_width; - o3_border=ol_border; - o3_cellpad=ol_cellpad; - o3_status=ol_status; - o3_autostatus=ol_autostatus; - o3_height=ol_height; - o3_snapx=ol_snapx; - o3_snapy=ol_snapy; - o3_fixx=ol_fixx; - o3_fixy=ol_fixy; - o3_relx=ol_relx; - o3_rely=ol_rely; - o3_fgbackground=ol_fgbackground; - o3_bgbackground=ol_bgbackground; - o3_padxl=ol_padxl; - o3_padxr=ol_padxr; - o3_padyt=ol_padyt; - o3_padyb=ol_padyb; - o3_fullhtml=ol_fullhtml; - o3_vpos=ol_vpos; - o3_aboveheight=ol_aboveheight; - o3_capicon=ol_capicon; - o3_textfont=ol_textfont; - o3_captionfont=ol_captionfont; - o3_closefont=ol_closefont; - o3_textsize=ol_textsize; - o3_captionsize=ol_captionsize; - o3_closesize=ol_closesize; - o3_timeout=ol_timeout; - o3_function=ol_function; - o3_delay=ol_delay; - o3_hauto=ol_hauto; - o3_vauto=ol_vauto; - o3_closeclick=ol_closeclick; - o3_wrap=ol_wrap; - o3_followmouse=ol_followmouse; - o3_mouseoff=ol_mouseoff; - o3_closetitle=ol_closetitle; - o3_css=ol_css; - o3_compatmode=ol_compatmode; - o3_fgclass=ol_fgclass; - o3_bgclass=ol_bgclass; - o3_textfontclass=ol_textfontclass; - o3_captionfontclass=ol_captionfontclass; - o3_closefontclass=ol_closefontclass; - - setRunTimeVariables(); - - fnRef = ''; - - // Special for frame support, over must be reset... - o3_frame = ol_frame; - - if(!(over=createDivContainer())) return false; - - parseTokens('o3_', overlib.arguments); - if (!postParseChecks()) return false; - - if (o3_delay == 0) { - return runHook("olMain", FREPLACE); - } else { - o3_delayid = setTimeout("runHook('olMain', FREPLACE)", o3_delay); - return false; - } -} - -// Clears popups if appropriate -function nd(time) { - if (olLoaded && !isExclusive()) { - hideDelay(time); // delay popup close if time specified - - if (o3_removecounter >= 1) { o3_showingsticky = 0 }; - - if (o3_showingsticky == 0) { - o3_allowmove = 0; - if (over != null && o3_timerid == 0) runHook("hideObject", FREPLACE, over); - } else { - o3_removecounter++; - } - } - - return true; -} - -// The Close onMouseOver function for stickies -function cClick() { - if (olLoaded) { - runHook("hideObject", FREPLACE, over); - o3_showingsticky = 0; - } - return false; -} - -// Method for setting page specific defaults. -function overlib_pagedefaults() { - parseTokens('ol_', overlib_pagedefaults.arguments); -} - - -//////// -// OVERLIB MAIN FUNCTION -//////// - -// This function decides what it is we want to display and how we want it done. -function olMain() { - var layerhtml, styleType; - runHook("olMain", FBEFORE); - - if (o3_background!="" || o3_fullhtml) { - // Use background instead of box. - layerhtml = runHook('ol_content_background', FALTERNATE, o3_css, o3_text, o3_background, o3_fullhtml); - } else { - // They want a popup box. - styleType = (pms[o3_css-1-pmStart] == "cssoff" || pms[o3_css-1-pmStart] == "cssclass"); - - // Prepare popup background - if (o3_fgbackground != "") o3_fgbackground = "background=\""+o3_fgbackground+"\""; - if (o3_bgbackground != "") o3_bgbackground = (styleType ? "background=\""+o3_bgbackground+"\"" : o3_bgbackground); - - // Prepare popup colors - if (o3_fgcolor != "") o3_fgcolor = (styleType ? "bgcolor=\""+o3_fgcolor+"\"" : o3_fgcolor); - if (o3_bgcolor != "") o3_bgcolor = (styleType ? "bgcolor=\""+o3_bgcolor+"\"" : o3_bgcolor); - - // Prepare popup height - if (o3_height > 0) o3_height = (styleType ? "height=\""+o3_height+"\"" : o3_height); - else o3_height = ""; - - // Decide which kinda box. - if (o3_cap=="") { - // Plain - layerhtml = runHook('ol_content_simple', FALTERNATE, o3_css, o3_text); - } else { - // With caption - if (o3_sticky) { - // Show close text - layerhtml = runHook('ol_content_caption', FALTERNATE, o3_css, o3_text, o3_cap, o3_close); - } else { - // No close text - layerhtml = runHook('ol_content_caption', FALTERNATE, o3_css, o3_text, o3_cap, ""); - } - } - } - - // We want it to stick! - if (o3_sticky) { - if (o3_timerid > 0) { - clearTimeout(o3_timerid); - o3_timerid = 0; - } - o3_showingsticky = 1; - o3_removecounter = 0; - } - - // Created a separate routine to generate the popup to make it easier - // to implement a plugin capability - if (!runHook("createPopup", FREPLACE, layerhtml)) return false; - - // Prepare status bar - if (o3_autostatus > 0) { - o3_status = o3_text; - if (o3_autostatus > 1) o3_status = o3_cap; - } - - // When placing the layer the first time, even stickies may be moved. - o3_allowmove = 0; - - // Initiate a timer for timeout - if (o3_timeout > 0) { - if (o3_timerid > 0) clearTimeout(o3_timerid); - o3_timerid = setTimeout("cClick()", o3_timeout); - } - - // Show layer - runHook("disp", FREPLACE, o3_status); - runHook("olMain", FAFTER); - - return (olOp && event && event.type == 'mouseover' && !o3_status) ? '' : (o3_status != ''); -} - -//////// -// LAYER GENERATION FUNCTIONS -//////// -// These functions just handle popup content with tags that should adhere to the W3C standards specification. - -// Makes simple table without caption -function ol_content_simple(text) { - var cpIsMultiple = /,/.test(o3_cellpad); - var txt = '
';
-
- set_background("");
- return txt;
-}
-
-// Makes table with caption and optional close link
-function ol_content_caption(text,title,close) {
- var nameId, txt, cpIsMultiple = /,/.test(o3_cellpad);
- var closing, closeevent;
-
- closing = "";
- closeevent = "onmouseover";
- if (o3_closeclick == 1) closeevent = (o3_closetitle ? "title='" + o3_closetitle +"'" : "") + " onclick";
- if (o3_capicon != "") {
- nameId = ' hspace = \"5\"'+' align = \"middle\" alt = \"\"';
- if (typeof o3_dragimg != 'undefined' && o3_dragimg) nameId =' hspace=\"5\"'+' name=\"'+o3_dragimg+'\" id=\"'+o3_dragimg+'\" align=\"middle\" alt=\"Drag Enabled\" title=\"Drag Enabled\"';
- o3_capicon = '';
- }
-
- if (close != "")
- closing = ''+(o3_closefontclass ? '' : wrapStr(0,o3_closesize,'close'))+close+(o3_closefontclass ? '' : wrapStr(1,o3_closesize,'close'))+' ';
- txt = '
';
-
- set_background("");
- return txt;
-}
-
-// Sets the background picture,padding and lots more. :)
-function ol_content_background(text,picture,hasfullhtml) {
- if (hasfullhtml) {
- txt=text;
- } else {
- txt='
';
- }
-
- set_background(picture);
- return txt;
-}
-
-// Loads a picture into the div.
-function set_background(pic) {
- if (pic == "") {
- if (olNs4) {
- over.background.src = null;
- } else if (over.style) {
- over.style.backgroundImage = "none";
- }
- } else {
- if (olNs4) {
- over.background.src = pic;
- } else if (over.style) {
- over.style.width=o3_width + 'px';
- over.style.backgroundImage = "url("+pic+")";
- }
- }
-}
-
-////////
-// HANDLING FUNCTIONS
-////////
-var olShowId=-1;
-
-// Displays the popup
-function disp(statustext) {
- runHook("disp", FBEFORE);
-
- if (o3_allowmove == 0) {
- runHook("placeLayer", FREPLACE);
- (olNs6&&olShowId<0) ? olShowId=setTimeout("runHook('showObject', FREPLACE, over)", 1) : runHook("showObject", FREPLACE, over);
- o3_allowmove = (o3_sticky || o3_followmouse==0) ? 0 : 1;
- }
-
- runHook("disp", FAFTER);
-
- if (statustext != "") self.status = statustext;
-}
-
-// Creates the actual popup structure
-function createPopup(lyrContent){
- runHook("createPopup", FBEFORE);
-
- if (o3_wrap) {
- var wd,ww,theObj = (olNs4 ? over : over.style);
- theObj.top = theObj.left = ((olIe4&&!olOp) ? 0 : -10000) + (!olNs4 ? 'px' : 0);
- layerWrite(lyrContent);
- wd = (olNs4 ? over.clip.width : over.offsetWidth);
- if (wd > (ww=windowWidth())) {
- lyrContent=lyrContent.replace(/\ /g, ' ');
- o3_width=ww;
- o3_wrap=0;
- }
- }
-
- layerWrite(lyrContent);
-
- // Have to set o3_width for placeLayer() routine if o3_wrap is turned on
- if (o3_wrap) o3_width=(olNs4 ? over.clip.width : over.offsetWidth);
-
- runHook("createPopup", FAFTER, lyrContent);
-
- return true;
-}
-
-// Decides where we want the popup.
-function placeLayer() {
- var placeX, placeY, widthFix = 0;
-
- // HORIZONTAL PLACEMENT, re-arranged to work in Safari
- if (o3_frame.innerWidth) widthFix=18;
- iwidth = windowWidth();
-
- // Horizontal scroll offset
- winoffset=(olIe4) ? eval('o3_frame.'+docRoot+'.scrollLeft') : o3_frame.pageXOffset;
-
- placeX = runHook('horizontalPlacement',FCHAIN,iwidth,winoffset,widthFix);
-
- // VERTICAL PLACEMENT, re-arranged to work in Safari
- if (o3_frame.innerHeight) {
- iheight=o3_frame.innerHeight;
- } else if (eval('o3_frame.'+docRoot)&&eval("typeof o3_frame."+docRoot+".clientHeight=='number'")&&eval('o3_frame.'+docRoot+'.clientHeight')) {
- iheight=eval('o3_frame.'+docRoot+'.clientHeight');
- }
-
- // Vertical scroll offset
- scrolloffset=(olIe4) ? eval('o3_frame.'+docRoot+'.scrollTop') : o3_frame.pageYOffset;
- placeY = runHook('verticalPlacement',FCHAIN,iheight,scrolloffset);
-
- // Actually move the object.
- repositionTo(over, placeX, placeY);
-}
-
-// Moves the layer
-function olMouseMove(e) {
- var e = (e) ? e : event;
-
- if (e.pageX) {
- o3_x = e.pageX;
- o3_y = e.pageY;
- } else if (e.clientX) {
- o3_x = eval('e.clientX+o3_frame.'+docRoot+'.scrollLeft');
- o3_y = eval('e.clientY+o3_frame.'+docRoot+'.scrollTop');
- }
-
- if (o3_allowmove == 1) runHook("placeLayer", FREPLACE);
-
- // MouseOut handler
- if (hoveringSwitch && !olNs4 && runHook("cursorOff", FREPLACE)) {
- (olHideDelay ? hideDelay(olHideDelay) : cClick());
- hoveringSwitch = !hoveringSwitch;
- }
-}
-
-// Fake function for 3.0 users.
-function no_overlib() { return ver3fix; }
-
-// Capture the mouse and chain other scripts.
-function olMouseCapture() {
- capExtent = document;
- var fN, str = '', l, k, f, wMv, sS, mseHandler = olMouseMove;
- var re = /function[ ]*(\w*)\(/;
-
- wMv = (!olIe4 && window.onmousemove);
- if (document.onmousemove || wMv) {
- if (wMv) capExtent = window;
- f = capExtent.onmousemove.toString();
- fN = f.match(re);
- if (fN == null) {
- str = f+'(e); ';
- } else if (fN[1] == 'anonymous' || fN[1] == 'olMouseMove' || (wMv && fN[1] == 'onmousemove')) {
- if (!olOp && wMv) {
- l = f.indexOf('{')+1;
- k = f.lastIndexOf('}');
- sS = f.substring(l,k);
- if ((l = sS.indexOf('(')) != -1) {
- sS = sS.substring(0,l).replace(/^\s+/,'').replace(/\s+$/,'');
- if (eval("typeof " + sS + " == 'undefined'")) window.onmousemove = null;
- else str = sS + '(e);';
- }
- }
- if (!str) {
- olCheckMouseCapture = false;
- return;
- }
- } else {
- if (fN[1]) str = fN[1]+'(e); ';
- else {
- l = f.indexOf('{')+1;
- k = f.lastIndexOf('}');
- str = f.substring(l,k) + '\n';
- }
- }
- str += 'olMouseMove(e); ';
- mseHandler = new Function('e', str);
- }
-
- capExtent.onmousemove = mseHandler;
- if (olNs4) capExtent.captureEvents(Event.MOUSEMOVE);
-}
-
-////////
-// PARSING FUNCTIONS
-////////
-
-// Does the actual command parsing.
-function parseTokens(pf, ar) {
- // What the next argument is expected to be.
- var v, i, mode=-1, par = (pf != 'ol_');
- var fnMark = (par && !ar.length ? 1 : 0);
-
- for (i = 0; i < ar.length; i++) {
- if (mode < 0) {
- // Arg is maintext,unless its a number between pmStart and pmUpper
- // then its a command.
- if (typeof ar[i] == 'number' && ar[i] > pmStart && ar[i] < pmUpper) {
- fnMark = (par ? 1 : 0);
- i--; // backup one so that the next block can parse it
- } else {
- switch(pf) {
- case 'ol_':
- ol_text = ar[i].toString();
- break;
- default:
- o3_text=ar[i].toString();
- }
- }
- mode = 0;
- } else {
- // Note: NS4 doesn't like switch cases with vars.
- if (ar[i] >= pmCount || ar[i]==DONOTHING) { continue; }
- if (ar[i]==INARRAY) { fnMark = 0; eval(pf+'text=ol_texts['+ar[++i]+'].toString()'); continue; }
- if (ar[i]==CAPARRAY) { eval(pf+'cap=ol_caps['+ar[++i]+'].toString()'); continue; }
- if (ar[i]==STICKY) { if (pf!='ol_') eval(pf+'sticky=1'); continue; }
- if (ar[i]==BACKGROUND) { eval(pf+'background="'+ar[++i]+'"'); continue; }
- if (ar[i]==NOCLOSE) { if (pf!='ol_') opt_NOCLOSE(); continue; }
- if (ar[i]==CAPTION) { eval(pf+"cap='"+escSglQuote(ar[++i])+"'"); continue; }
- if (ar[i]==CENTER || ar[i]==LEFT || ar[i]==RIGHT) { eval(pf+'hpos='+ar[i]); if(pf!='ol_') olHautoFlag=1; continue; }
- if (ar[i]==OFFSETX) { eval(pf+'offsetx='+ar[++i]); continue; }
- if (ar[i]==OFFSETY) { eval(pf+'offsety='+ar[++i]); continue; }
- if (ar[i]==FGCOLOR) { eval(pf+'fgcolor="'+ar[++i]+'"'); continue; }
- if (ar[i]==BGCOLOR) { eval(pf+'bgcolor="'+ar[++i]+'"'); continue; }
- if (ar[i]==TEXTCOLOR) { eval(pf+'textcolor="'+ar[++i]+'"'); continue; }
- if (ar[i]==CAPCOLOR) { eval(pf+'capcolor="'+ar[++i]+'"'); continue; }
- if (ar[i]==CLOSECOLOR) { eval(pf+'closecolor="'+ar[++i]+'"'); continue; }
- if (ar[i]==WIDTH) { eval(pf+'width='+ar[++i]); continue; }
- if (ar[i]==BORDER) { eval(pf+'border='+ar[++i]); continue; }
- if (ar[i]==CELLPAD) { i=opt_MULTIPLEARGS(++i,ar,(pf+'cellpad')); continue; }
- if (ar[i]==STATUS) { eval(pf+"status='"+escSglQuote(ar[++i])+"'"); continue; }
- if (ar[i]==AUTOSTATUS) { eval(pf +'autostatus=('+pf+'autostatus == 1) ? 0 : 1'); continue; }
- if (ar[i]==AUTOSTATUSCAP) { eval(pf +'autostatus=('+pf+'autostatus == 2) ? 0 : 2'); continue; }
- if (ar[i]==HEIGHT) { eval(pf+'height='+pf+'aboveheight='+ar[++i]); continue; } // Same param again.
- if (ar[i]==CLOSETEXT) { eval(pf+"close='"+escSglQuote(ar[++i])+"'"); continue; }
- if (ar[i]==SNAPX) { eval(pf+'snapx='+ar[++i]); continue; }
- if (ar[i]==SNAPY) { eval(pf+'snapy='+ar[++i]); continue; }
- if (ar[i]==FIXX) { eval(pf+'fixx='+ar[++i]); continue; }
- if (ar[i]==FIXY) { eval(pf+'fixy='+ar[++i]); continue; }
- if (ar[i]==RELX) { eval(pf+'relx='+ar[++i]); continue; }
- if (ar[i]==RELY) { eval(pf+'rely='+ar[++i]); continue; }
- if (ar[i]==FGBACKGROUND) { eval(pf+'fgbackground="'+ar[++i]+'"'); continue; }
- if (ar[i]==BGBACKGROUND) { eval(pf+'bgbackground="'+ar[++i]+'"'); continue; }
- if (ar[i]==PADX) { eval(pf+'padxl='+ar[++i]); eval(pf+'padxr='+ar[++i]); continue; }
- if (ar[i]==PADY) { eval(pf+'padyt='+ar[++i]); eval(pf+'padyb='+ar[++i]); continue; }
- if (ar[i]==FULLHTML) { if (pf!='ol_') eval(pf+'fullhtml=1'); continue; }
- if (ar[i]==BELOW || ar[i]==ABOVE) { eval(pf+'vpos='+ar[i]); if (pf!='ol_') olVautoFlag=1; continue; }
- if (ar[i]==CAPICON) { eval(pf+'capicon="'+ar[++i]+'"'); continue; }
- if (ar[i]==TEXTFONT) { eval(pf+"textfont='"+escSglQuote(ar[++i])+"'"); continue; }
- if (ar[i]==CAPTIONFONT) { eval(pf+"captionfont='"+escSglQuote(ar[++i])+"'"); continue; }
- if (ar[i]==CLOSEFONT) { eval(pf+"closefont='"+escSglQuote(ar[++i])+"'"); continue; }
- if (ar[i]==TEXTSIZE) { eval(pf+'textsize="'+ar[++i]+'"'); continue; }
- if (ar[i]==CAPTIONSIZE) { eval(pf+'captionsize="'+ar[++i]+'"'); continue; }
- if (ar[i]==CLOSESIZE) { eval(pf+'closesize="'+ar[++i]+'"'); continue; }
- if (ar[i]==TIMEOUT) { eval(pf+'timeout='+ar[++i]); continue; }
- if (ar[i]==FUNCTION) { if (pf=='ol_') { if (typeof ar[i+1]!='number') { v=ar[++i]; ol_function=(typeof v=='function' ? v : null); }} else {fnMark = 0; v = null; if (typeof ar[i+1]!='number') v = ar[++i]; opt_FUNCTION(v); } continue; }
- if (ar[i]==DELAY) { eval(pf+'delay='+ar[++i]); continue; }
- if (ar[i]==HAUTO) { eval(pf+'hauto=('+pf+'hauto == 0) ? 1 : 0'); continue; }
- if (ar[i]==VAUTO) { eval(pf+'vauto=('+pf+'vauto == 0) ? 1 : 0'); continue; }
- if (ar[i]==CLOSECLICK) { eval(pf +'closeclick=('+pf+'closeclick == 0) ? 1 : 0'); continue; }
- if (ar[i]==WRAP) { eval(pf +'wrap=('+pf+'wrap == 0) ? 1 : 0'); continue; }
- if (ar[i]==FOLLOWMOUSE) { eval(pf +'followmouse=('+pf+'followmouse == 1) ? 0 : 1'); continue; }
- if (ar[i]==MOUSEOFF) { eval(pf +'mouseoff=('+pf+'mouseoff==0) ? 1 : 0'); v=ar[i+1]; if (pf != 'ol_' && eval(pf+'mouseoff') && typeof v == 'number' && (v < pmStart || v > pmUpper)) olHideDelay=ar[++i]; continue; }
- if (ar[i]==CLOSETITLE) { eval(pf+"closetitle='"+escSglQuote(ar[++i])+"'"); continue; }
- if (ar[i]==CSSOFF||ar[i]==CSSCLASS) { eval(pf+'css='+ar[i]); continue; }
- if (ar[i]==COMPATMODE) { eval(pf+'compatmode=('+pf+'compatmode==0) ? 1 : 0'); continue; }
- if (ar[i]==FGCLASS) { eval(pf+'fgclass="'+ar[++i]+'"'); continue; }
- if (ar[i]==BGCLASS) { eval(pf+'bgclass="'+ar[++i]+'"'); continue; }
- if (ar[i]==TEXTFONTCLASS) { eval(pf+'textfontclass="'+ar[++i]+'"'); continue; }
- if (ar[i]==CAPTIONFONTCLASS) { eval(pf+'captionfontclass="'+ar[++i]+'"'); continue; }
- if (ar[i]==CLOSEFONTCLASS) { eval(pf+'closefontclass="'+ar[++i]+'"'); continue; }
- i = parseCmdLine(pf, i, ar);
- }
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-
- if (fnMark && o3_function) o3_text = o3_function();
-
- if ((pf == 'o3_') && o3_wrap) {
- o3_width = 0;
-
- var tReg=/<.*\n*>/ig;
- if (!tReg.test(o3_text)) o3_text = o3_text.replace(/[ ]+/g, ' ');
- if (!tReg.test(o3_cap))o3_cap = o3_cap.replace(/[ ]+/g, ' ');
- }
- if ((pf == 'o3_') && o3_sticky) {
- if (!o3_close && (o3_frame != ol_frame)) o3_close = ol_close;
- if (o3_mouseoff && (o3_frame == ol_frame)) opt_NOCLOSE(' ');
- }
-}
-
-
-////////
-// LAYER FUNCTIONS
-////////
-
-// Writes to a layer
-function layerWrite(txt) {
- txt += "\n";
- if (olNs4) {
- var lyr = o3_frame.document.layers['overDiv'].document
- lyr.write(txt)
- lyr.close()
- } else if (typeof over.innerHTML != 'undefined') {
- if (olIe5 && isMac) over.innerHTML = '';
- over.innerHTML = txt;
- } else {
- range = o3_frame.document.createRange();
- range.setStartAfter(over);
- domfrag = range.createContextualFragment(txt);
-
- while (over.hasChildNodes()) {
- over.removeChild(over.lastChild);
- }
-
- over.appendChild(domfrag);
- }
-}
-
-// Make an object visible
-function showObject(obj) {
- runHook("showObject", FBEFORE);
-
- var theObj=(olNs4 ? obj : obj.style);
- theObj.visibility = 'visible';
-
- runHook("showObject", FAFTER);
-}
-
-// Hides an object
-function hideObject(obj) {
- runHook("hideObject", FBEFORE);
-
- var theObj=(olNs4 ? obj : obj.style);
- if (olNs6 && olShowId>0) { clearTimeout(olShowId); olShowId=0; }
- theObj.visibility = 'hidden';
- theObj.top = theObj.left = ((olIe4&&!olOp) ? 0 : -10000) + (!olNs4 ? 'px' : 0);
-
- if (o3_timerid > 0) clearTimeout(o3_timerid);
- if (o3_delayid > 0) clearTimeout(o3_delayid);
-
- o3_timerid = 0;
- o3_delayid = 0;
- self.status = "";
-
- if (obj.onmouseout||obj.onmouseover) {
- if (olNs4) obj.releaseEvents(Event.MOUSEOUT || Event.MOUSEOVER);
- obj.onmouseout = obj.onmouseover = null;
- }
-
- runHook("hideObject", FAFTER);
-}
-
-// Move a layer
-function repositionTo(obj, xL, yL) {
- var theObj=(olNs4 ? obj : obj.style);
- theObj.left = xL + (!olNs4 ? 'px' : 0);
- theObj.top = yL + (!olNs4 ? 'px' : 0);
-}
-
-// Check position of cursor relative to overDiv DIVision; mouseOut function
-function cursorOff() {
- var left = parseInt(over.style.left);
- var top = parseInt(over.style.top);
- var right = left + (over.offsetWidth >= parseInt(o3_width) ? over.offsetWidth : parseInt(o3_width));
- var bottom = top + (over.offsetHeight >= o3_aboveheight ? over.offsetHeight : o3_aboveheight);
-
- if (o3_x < left || o3_x > right || o3_y < top || o3_y > bottom) return true;
-
- return false;
-}
-
-
-////////
-// COMMAND FUNCTIONS
-////////
-
-// Calls callme or the default function.
-function opt_FUNCTION(callme) {
- o3_text = (callme ? (typeof callme=='string' ? (/.+\(.*\)/.test(callme) ? eval(callme) : callme) : callme()) : (o3_function ? o3_function() : 'No Function'));
-
- return 0;
-}
-
-// Handle hovering
-function opt_NOCLOSE(unused) {
- if (!unused) o3_close = "";
-
- if (olNs4) {
- over.captureEvents(Event.MOUSEOUT || Event.MOUSEOVER);
- over.onmouseover = function () { if (o3_timerid > 0) { clearTimeout(o3_timerid); o3_timerid = 0; } }
- over.onmouseout = function (e) { if (olHideDelay) hideDelay(olHideDelay); else cClick(e); }
- } else {
- over.onmouseover = function () {hoveringSwitch = true; if (o3_timerid > 0) { clearTimeout(o3_timerid); o3_timerid =0; } }
- }
-
- return 0;
-}
-
-// Function to scan command line arguments for multiples
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- var k=i, re, pV, str='';
-
- for(k=i; kpmStart) break;
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- if (str) str = str.substring(0,--str.length);
-
- k--; // reduce by one so the for loop this is in works correctly
- pV=(olNs4 && /cellpad/i.test(parameter)) ? str.split(',')[0] : str;
- eval(parameter + '="' + pV + '"');
-
- return k;
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-
-// Remove in texts when done.
-function nbspCleanup() {
- if (o3_wrap) {
- o3_text = o3_text.replace(/\ /g, ' ');
- o3_cap = o3_cap.replace(/\ /g, ' ');
- }
-}
-
-// Escape embedded single quotes in text strings
-function escSglQuote(str) {
- return str.toString().replace(/'/g,"\\'");
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-
-// Onload handler for window onload event
-function OLonLoad_handler(e) {
- var re = /\w+\(.*\)[;\s]+/g, olre = /overlib\(|nd\(|cClick\(/, fn, l, i;
-
- if(!olLoaded) olLoaded=1;
-
- // Remove it for Gecko based browsers
- if(window.removeEventListener && e.eventPhase == 3) window.removeEventListener("load",OLonLoad_handler,false);
- else if(window.detachEvent) { // and for IE and Opera 4.x but execute calls to overlib, nd, or cClick()
- window.detachEvent("onload",OLonLoad_handler);
- var fN = document.body.getAttribute('onload');
- if (fN) {
- fN=fN.toString().match(re);
- if (fN && fN.length) {
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') : '';
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- fontColor='o3_'+((whichString=='caption')? 'cap' : whichString)+'color';
- return (hasDims&&!olNs4) ? (isClose ? '' : '| BarcodeSequence | ||
|---|---|---|
-
-
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-
-Download Figure |
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-
-
-Download Figure |
-
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-
-Download Figure |
-
| day | ||
|---|---|---|
-
-
-Download Figure |
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-
-
-Download Figure |
-
-
-
-Download Figure |
-
| days_since_epoch | ||
|---|---|---|
-
-
-Download Figure |
-
-
-
-Download Figure |
-
-
-
-Download Figure |
-
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All of this can also be -// changed on your html page or through an overLIB call. -//////// -if (typeof ol_fgcolor=='undefined') var ol_fgcolor="#CCCCFF"; -if (typeof ol_bgcolor=='undefined') var ol_bgcolor="#333399"; -if (typeof ol_textcolor=='undefined') var ol_textcolor="#000000"; -if (typeof ol_capcolor=='undefined') var ol_capcolor="#FFFFFF"; -if (typeof ol_closecolor=='undefined') var ol_closecolor="#9999FF"; -if (typeof ol_textfont=='undefined') var ol_textfont="Verdana,Arial,Helvetica"; -if (typeof ol_captionfont=='undefined') var ol_captionfont="Verdana,Arial,Helvetica"; -if (typeof ol_closefont=='undefined') var ol_closefont="Verdana,Arial,Helvetica"; -if (typeof ol_textsize=='undefined') var ol_textsize="1"; -if (typeof ol_captionsize=='undefined') var ol_captionsize="1"; -if (typeof ol_closesize=='undefined') var ol_closesize="1"; -if (typeof ol_width=='undefined') var ol_width="200"; -if (typeof ol_border=='undefined') var ol_border="1"; -if (typeof ol_cellpad=='undefined') var ol_cellpad=2; -if (typeof ol_offsetx=='undefined') var ol_offsetx=10; -if (typeof ol_offsety=='undefined') var ol_offsety=10; -if (typeof ol_text=='undefined') var ol_text="Default Text"; -if (typeof ol_cap=='undefined') var ol_cap=""; -if (typeof ol_sticky=='undefined') var ol_sticky=0; -if (typeof ol_background=='undefined') var ol_background=""; -if (typeof ol_close=='undefined') var ol_close="Close"; -if (typeof ol_hpos=='undefined') var ol_hpos=RIGHT; -if (typeof ol_status=='undefined') var ol_status=""; -if (typeof ol_autostatus=='undefined') var ol_autostatus=0; -if (typeof ol_height=='undefined') var ol_height=-1; -if (typeof ol_snapx=='undefined') var ol_snapx=0; -if (typeof ol_snapy=='undefined') var ol_snapy=0; -if (typeof ol_fixx=='undefined') var ol_fixx=-1; -if (typeof ol_fixy=='undefined') var ol_fixy=-1; -if (typeof ol_relx=='undefined') var ol_relx=null; -if (typeof ol_rely=='undefined') var ol_rely=null; -if (typeof ol_fgbackground=='undefined') var ol_fgbackground=""; -if (typeof ol_bgbackground=='undefined') var ol_bgbackground=""; -if (typeof ol_padxl=='undefined') var ol_padxl=1; -if (typeof ol_padxr=='undefined') var ol_padxr=1; -if (typeof ol_padyt=='undefined') var ol_padyt=1; -if (typeof ol_padyb=='undefined') var ol_padyb=1; -if (typeof ol_fullhtml=='undefined') var ol_fullhtml=0; -if (typeof ol_vpos=='undefined') var ol_vpos=BELOW; -if (typeof ol_aboveheight=='undefined') var ol_aboveheight=0; -if (typeof ol_capicon=='undefined') var ol_capicon=""; -if (typeof ol_frame=='undefined') var ol_frame=self; -if (typeof ol_timeout=='undefined') var ol_timeout=0; -if (typeof ol_function=='undefined') var ol_function=null; -if (typeof ol_delay=='undefined') var ol_delay=0; -if (typeof ol_hauto=='undefined') var ol_hauto=0; -if (typeof ol_vauto=='undefined') var ol_vauto=0; -if (typeof ol_closeclick=='undefined') var ol_closeclick=0; -if (typeof ol_wrap=='undefined') var ol_wrap=0; -if (typeof ol_followmouse=='undefined') var ol_followmouse=1; -if (typeof ol_mouseoff=='undefined') var ol_mouseoff=0; -if (typeof ol_closetitle=='undefined') var ol_closetitle='Close'; -if (typeof ol_compatmode=='undefined') var ol_compatmode=0; -if (typeof ol_css=='undefined') var ol_css=CSSOFF; -if (typeof ol_fgclass=='undefined') var ol_fgclass=""; -if (typeof ol_bgclass=='undefined') var ol_bgclass=""; -if (typeof ol_textfontclass=='undefined') var ol_textfontclass=""; -if (typeof ol_captionfontclass=='undefined') var ol_captionfontclass=""; -if (typeof ol_closefontclass=='undefined') var ol_closefontclass=""; - -//////// -// ARRAY CONFIGURATION -//////// - -// You can use these arrays to store popup text here instead of in the html. -if (typeof ol_texts=='undefined') var ol_texts = new Array("Text 0", "Text 1"); -if (typeof ol_caps=='undefined') var ol_caps = new Array("Caption 0", "Caption 1"); - -//////// -// END OF CONFIGURATION -// Don't change anything below this line, all configuration is above. -//////// - - - - - -//////// -// INIT -//////// -// Runtime variables init. 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'document.documentElement' : docRoot); -} - -// Add window onload handlers to indicate when all modules have been loaded -// For Netscape 6+ and Mozilla, uses addEventListener method on the window object -// For IE it uses the attachEvent method of the window object and for Netscape 4.x -// it sets the window.onload handler to the OLonload_handler function for Bubbling -if(window.addEventListener) window.addEventListener("load",OLonLoad_handler,false); -else if (window.attachEvent) window.attachEvent("onload",OLonLoad_handler); - -var capExtent; - -//////// -// PUBLIC FUNCTIONS -//////// - -// overlib(arg0,...,argN) -// Loads parameters into global runtime variables. -function overlib() { - if (!olLoaded || isExclusive(overlib.arguments)) return true; - if (olCheckMouseCapture) olMouseCapture(); - if (over) { - over = (typeof over.id != 'string') ? o3_frame.document.all['overDiv'] : over; - cClick(); - } - - // Load defaults to runtime. - olHideDelay=0; - o3_text=ol_text; - o3_cap=ol_cap; - o3_sticky=ol_sticky; - o3_background=ol_background; - o3_close=ol_close; - o3_hpos=ol_hpos; - o3_offsetx=ol_offsetx; - o3_offsety=ol_offsety; - o3_fgcolor=ol_fgcolor; - o3_bgcolor=ol_bgcolor; - o3_textcolor=ol_textcolor; - o3_capcolor=ol_capcolor; - o3_closecolor=ol_closecolor; - o3_width=ol_width; - o3_border=ol_border; - o3_cellpad=ol_cellpad; - o3_status=ol_status; - o3_autostatus=ol_autostatus; - o3_height=ol_height; - o3_snapx=ol_snapx; - o3_snapy=ol_snapy; - o3_fixx=ol_fixx; - o3_fixy=ol_fixy; - o3_relx=ol_relx; - o3_rely=ol_rely; - o3_fgbackground=ol_fgbackground; - o3_bgbackground=ol_bgbackground; - o3_padxl=ol_padxl; - o3_padxr=ol_padxr; - o3_padyt=ol_padyt; - o3_padyb=ol_padyb; - o3_fullhtml=ol_fullhtml; - o3_vpos=ol_vpos; - o3_aboveheight=ol_aboveheight; - o3_capicon=ol_capicon; - o3_textfont=ol_textfont; - o3_captionfont=ol_captionfont; - o3_closefont=ol_closefont; - o3_textsize=ol_textsize; - o3_captionsize=ol_captionsize; - o3_closesize=ol_closesize; - o3_timeout=ol_timeout; - o3_function=ol_function; - o3_delay=ol_delay; - o3_hauto=ol_hauto; - o3_vauto=ol_vauto; - o3_closeclick=ol_closeclick; - o3_wrap=ol_wrap; - o3_followmouse=ol_followmouse; - o3_mouseoff=ol_mouseoff; - o3_closetitle=ol_closetitle; - o3_css=ol_css; - o3_compatmode=ol_compatmode; - o3_fgclass=ol_fgclass; - o3_bgclass=ol_bgclass; - o3_textfontclass=ol_textfontclass; - o3_captionfontclass=ol_captionfontclass; - o3_closefontclass=ol_closefontclass; - - setRunTimeVariables(); - - fnRef = ''; - - // Special for frame support, over must be reset... - o3_frame = ol_frame; - - if(!(over=createDivContainer())) return false; - - parseTokens('o3_', overlib.arguments); - if (!postParseChecks()) return false; - - if (o3_delay == 0) { - return runHook("olMain", FREPLACE); - } else { - o3_delayid = setTimeout("runHook('olMain', FREPLACE)", o3_delay); - return false; - } -} - -// Clears popups if appropriate -function nd(time) { - if (olLoaded && !isExclusive()) { - hideDelay(time); // delay popup close if time specified - - if (o3_removecounter >= 1) { o3_showingsticky = 0 }; - - if (o3_showingsticky == 0) { - o3_allowmove = 0; - if (over != null && o3_timerid == 0) runHook("hideObject", FREPLACE, over); - } else { - o3_removecounter++; - } - } - - return true; -} - -// The Close onMouseOver function for stickies -function cClick() { - if (olLoaded) { - runHook("hideObject", FREPLACE, over); - o3_showingsticky = 0; - } - return false; -} - -// Method for setting page specific defaults. -function overlib_pagedefaults() { - parseTokens('ol_', overlib_pagedefaults.arguments); -} - - -//////// -// OVERLIB MAIN FUNCTION -//////// - -// This function decides what it is we want to display and how we want it done. -function olMain() { - var layerhtml, styleType; - runHook("olMain", FBEFORE); - - if (o3_background!="" || o3_fullhtml) { - // Use background instead of box. - layerhtml = runHook('ol_content_background', FALTERNATE, o3_css, o3_text, o3_background, o3_fullhtml); - } else { - // They want a popup box. - styleType = (pms[o3_css-1-pmStart] == "cssoff" || pms[o3_css-1-pmStart] == "cssclass"); - - // Prepare popup background - if (o3_fgbackground != "") o3_fgbackground = "background=\""+o3_fgbackground+"\""; - if (o3_bgbackground != "") o3_bgbackground = (styleType ? "background=\""+o3_bgbackground+"\"" : o3_bgbackground); - - // Prepare popup colors - if (o3_fgcolor != "") o3_fgcolor = (styleType ? "bgcolor=\""+o3_fgcolor+"\"" : o3_fgcolor); - if (o3_bgcolor != "") o3_bgcolor = (styleType ? "bgcolor=\""+o3_bgcolor+"\"" : o3_bgcolor); - - // Prepare popup height - if (o3_height > 0) o3_height = (styleType ? "height=\""+o3_height+"\"" : o3_height); - else o3_height = ""; - - // Decide which kinda box. - if (o3_cap=="") { - // Plain - layerhtml = runHook('ol_content_simple', FALTERNATE, o3_css, o3_text); - } else { - // With caption - if (o3_sticky) { - // Show close text - layerhtml = runHook('ol_content_caption', FALTERNATE, o3_css, o3_text, o3_cap, o3_close); - } else { - // No close text - layerhtml = runHook('ol_content_caption', FALTERNATE, o3_css, o3_text, o3_cap, ""); - } - } - } - - // We want it to stick! - if (o3_sticky) { - if (o3_timerid > 0) { - clearTimeout(o3_timerid); - o3_timerid = 0; - } - o3_showingsticky = 1; - o3_removecounter = 0; - } - - // Created a separate routine to generate the popup to make it easier - // to implement a plugin capability - if (!runHook("createPopup", FREPLACE, layerhtml)) return false; - - // Prepare status bar - if (o3_autostatus > 0) { - o3_status = o3_text; - if (o3_autostatus > 1) o3_status = o3_cap; - } - - // When placing the layer the first time, even stickies may be moved. - o3_allowmove = 0; - - // Initiate a timer for timeout - if (o3_timeout > 0) { - if (o3_timerid > 0) clearTimeout(o3_timerid); - o3_timerid = setTimeout("cClick()", o3_timeout); - } - - // Show layer - runHook("disp", FREPLACE, o3_status); - runHook("olMain", FAFTER); - - return (olOp && event && event.type == 'mouseover' && !o3_status) ? '' : (o3_status != ''); -} - -//////// -// LAYER GENERATION FUNCTIONS -//////// -// These functions just handle popup content with tags that should adhere to the W3C standards specification. - -// Makes simple table without caption -function ol_content_simple(text) { - var cpIsMultiple = /,/.test(o3_cellpad); - var txt = '
|
|
| '+(o3_textfontclass ? '' : wrapStr(0,o3_textsize,'text'))+text+(o3_textfontclass ? '' : wrapStr(1,o3_textsize))+' | ||
') : '';
- }
-}
-
-// Quotes Multi word font names; needed for CSS Standards adherence in font-family
-function quoteMultiNameFonts(theFont) {
- var v, pM=theFont.split(',');
- for (var i=0; i 0) clearTimeout(o3_timerid);
-
- o3_timerid=setTimeout("cClick()",(o3_timeout=time));
- }
-}
-
-// Was originally in the placeLayer() routine; separated out for future ease
-function horizontalPlacement(browserWidth, horizontalScrollAmount, widthFix) {
- var placeX, iwidth=browserWidth, winoffset=horizontalScrollAmount;
- var parsedWidth = parseInt(o3_width);
-
- if (o3_fixx > -1 || o3_relx != null) {
- // Fixed position
- placeX=(o3_relx != null ? ( o3_relx < 0 ? winoffset +o3_relx+ iwidth - parsedWidth - widthFix : winoffset+o3_relx) : o3_fixx);
- } else {
- // If HAUTO, decide what to use.
- if (o3_hauto == 1) {
- if ((o3_x - winoffset) > (iwidth / 2)) {
- o3_hpos = LEFT;
- } else {
- o3_hpos = RIGHT;
- }
- }
-
- // From mouse
- if (o3_hpos == CENTER) { // Center
- placeX = o3_x+o3_offsetx-(parsedWidth/2);
-
- if (placeX < winoffset) placeX = winoffset;
- }
-
- if (o3_hpos == RIGHT) { // Right
- placeX = o3_x+o3_offsetx;
-
- if ((placeX+parsedWidth) > (winoffset+iwidth - widthFix)) {
- placeX = iwidth+winoffset - parsedWidth - widthFix;
- if (placeX < 0) placeX = 0;
- }
- }
- if (o3_hpos == LEFT) { // Left
- placeX = o3_x-o3_offsetx-parsedWidth;
- if (placeX < winoffset) placeX = winoffset;
- }
-
- // Snapping!
- if (o3_snapx > 1) {
- var snapping = placeX % o3_snapx;
-
- if (o3_hpos == LEFT) {
- placeX = placeX - (o3_snapx+snapping);
- } else {
- // CENTER and RIGHT
- placeX = placeX+(o3_snapx - snapping);
- }
-
- if (placeX < winoffset) placeX = winoffset;
- }
- }
-
- return placeX;
-}
-
-// was originally in the placeLayer() routine; separated out for future ease
-function verticalPlacement(browserHeight,verticalScrollAmount) {
- var placeY, iheight=browserHeight, scrolloffset=verticalScrollAmount;
- var parsedHeight=(o3_aboveheight ? parseInt(o3_aboveheight) : (olNs4 ? over.clip.height : over.offsetHeight));
-
- if (o3_fixy > -1 || o3_rely != null) {
- // Fixed position
- placeY=(o3_rely != null ? (o3_rely < 0 ? scrolloffset+o3_rely+iheight - parsedHeight : scrolloffset+o3_rely) : o3_fixy);
- } else {
- // If VAUTO, decide what to use.
- if (o3_vauto == 1) {
- if ((o3_y - scrolloffset) > (iheight / 2) && o3_vpos == BELOW && (o3_y + parsedHeight + o3_offsety - (scrolloffset + iheight) > 0)) {
- o3_vpos = ABOVE;
- } else if (o3_vpos == ABOVE && (o3_y - (parsedHeight + o3_offsety) - scrolloffset < 0)) {
- o3_vpos = BELOW;
- }
- }
-
- // From mouse
- if (o3_vpos == ABOVE) {
- if (o3_aboveheight == 0) o3_aboveheight = parsedHeight;
-
- placeY = o3_y - (o3_aboveheight+o3_offsety);
- if (placeY < scrolloffset) placeY = scrolloffset;
- } else {
- // BELOW
- placeY = o3_y+o3_offsety;
- }
-
- // Snapping!
- if (o3_snapy > 1) {
- var snapping = placeY % o3_snapy;
-
- if (o3_aboveheight > 0 && o3_vpos == ABOVE) {
- placeY = placeY - (o3_snapy+snapping);
- } else {
- placeY = placeY+(o3_snapy - snapping);
- }
-
- if (placeY < scrolloffset) placeY = scrolloffset;
- }
- }
-
- return placeY;
-}
-
-// checks positioning flags
-function checkPositionFlags() {
- if (olHautoFlag) olHautoFlag = o3_hauto=0;
- if (olVautoFlag) olVautoFlag = o3_vauto=0;
- return true;
-}
-
-// get Browser window width
-function windowWidth() {
- var w;
- if (o3_frame.innerWidth) w=o3_frame.innerWidth;
- else if (eval('o3_frame.'+docRoot)&&eval("typeof o3_frame."+docRoot+".clientWidth=='number'")&&eval('o3_frame.'+docRoot+'.clientWidth'))
- w=eval('o3_frame.'+docRoot+'.clientWidth');
- return w;
-}
-
-// create the div container for popup content if it doesn't exist
-function createDivContainer(id,frm,zValue) {
- id = (id || 'overDiv'), frm = (frm || o3_frame), zValue = (zValue || 1000);
- var objRef, divContainer = layerReference(id);
-
- if (divContainer == null) {
- if (olNs4) {
- divContainer = frm.document.layers[id] = new Layer(window.innerWidth, frm);
- objRef = divContainer;
- } else {
- var body = (olIe4 ? frm.document.all.tags('BODY')[0] : frm.document.getElementsByTagName("BODY")[0]);
- if (olIe4&&!document.getElementById) {
- body.insertAdjacentHTML("beforeEnd",'');
- divContainer=layerReference(id);
- } else {
- divContainer = frm.document.createElement("DIV");
- divContainer.id = id;
- body.appendChild(divContainer);
- }
- objRef = divContainer.style;
- }
-
- objRef.position = 'absolute';
- objRef.visibility = 'hidden';
- objRef.zIndex = zValue;
- if (olIe4&&!olOp) objRef.left = objRef.top = '0px';
- else objRef.left = objRef.top = -10000 + (!olNs4 ? 'px' : 0);
- }
-
- return divContainer;
-}
-
-// get reference to a layer with ID=id
-function layerReference(id) {
- return (olNs4 ? o3_frame.document.layers[id] : (document.all ? o3_frame.document.all[id] : o3_frame.document.getElementById(id)));
-}
-////////
-// UTILITY FUNCTIONS
-////////
-
-// Checks if something is a function.
-function isFunction(fnRef) {
- var rtn = true;
-
- if (typeof fnRef == 'object') {
- for (var i = 0; i < fnRef.length; i++) {
- if (typeof fnRef[i]=='function') continue;
- rtn = false;
- break;
- }
- } else if (typeof fnRef != 'function') {
- rtn = false;
- }
-
- return rtn;
-}
-
-// Converts an array into an argument string for use in eval.
-function argToString(array, strtInd, argName) {
- var jS = strtInd, aS = '', ar = array;
- argName=(argName ? argName : 'ar');
-
- if (ar.length > jS) {
- for (var k = jS; k < ar.length; k++) aS += argName+'['+k+'], ';
- aS = aS.substring(0, aS.length-2);
- }
-
- return aS;
-}
-
-// Places a hook in the correct position in a hook point.
-function reOrder(hookPt, fnRef, order) {
- var newPt = new Array(), match, i, j;
-
- if (!order || typeof order == 'undefined' || typeof order == 'number') return hookPt;
-
- if (typeof order=='function') {
- if (typeof fnRef=='object') {
- newPt = newPt.concat(fnRef);
- } else {
- newPt[newPt.length++]=fnRef;
- }
-
- for (i = 0; i < hookPt.length; i++) {
- match = false;
- if (typeof fnRef == 'function' && hookPt[i] == fnRef) {
- continue;
- } else {
- for(j = 0; j < fnRef.length; j++) if (hookPt[i] == fnRef[j]) {
- match = true;
- break;
- }
- }
- if (!match) newPt[newPt.length++] = hookPt[i];
- }
-
- newPt[newPt.length++] = order;
-
- } else if (typeof order == 'object') {
- if (typeof fnRef == 'object') {
- newPt = newPt.concat(fnRef);
- } else {
- newPt[newPt.length++] = fnRef;
- }
-
- for (j = 0; j < hookPt.length; j++) {
- match = false;
- if (typeof fnRef == 'function' && hookPt[j] == fnRef) {
- continue;
- } else {
- for (i = 0; i < fnRef.length; i++) if (hookPt[j] == fnRef[i]) {
- match = true;
- break;
- }
- }
- if (!match) newPt[newPt.length++]=hookPt[j];
- }
-
- for (i = 0; i < newPt.length; i++) hookPt[i] = newPt[i];
- newPt.length = 0;
-
- for (j = 0; j < hookPt.length; j++) {
- match = false;
- for (i = 0; i < order.length; i++) {
- if (hookPt[j] == order[i]) {
- match = true;
- break;
- }
- }
- if (!match) newPt[newPt.length++] = hookPt[j];
- }
- newPt = newPt.concat(order);
- }
-
- hookPt = newPt;
-
- return hookPt;
-}
-
-////////
-// PLUGIN ACTIVATION FUNCTIONS
-////////
-
-// Runs plugin functions to set runtime variables.
-function setRunTimeVariables(){
- if (typeof runTime != 'undefined' && runTime.length) {
- for (var k = 0; k < runTime.length; k++) {
- runTime[k]();
- }
- }
-}
-
-// Runs plugin functions to parse commands.
-function parseCmdLine(pf, i, args) {
- if (typeof cmdLine != 'undefined' && cmdLine.length) {
- for (var k = 0; k < cmdLine.length; k++) {
- var j = cmdLine[k](pf, i, args);
- if (j >- 1) {
- i = j;
- break;
- }
- }
- }
-
- return i;
-}
-
-// Runs plugin functions to do things after parse.
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diff --git a/core_diversity_analyses/core_output/bdiv_even20/weighted_unifrac_2d_discrete/weighted_unifrac_pc_2D_PCoA_plots.html b/core_diversity_analyses/core_output/bdiv_even20/weighted_unifrac_2d_discrete/weighted_unifrac_pc_2D_PCoA_plots.html
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index e623e82..0000000
--- a/core_diversity_analyses/core_output/bdiv_even20/weighted_unifrac_2d_discrete/weighted_unifrac_pc_2D_PCoA_plots.html
+++ /dev/null
@@ -1,215 +0,0 @@
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9154040..0000000 --- a/core_diversity_analyses/core_output/bdiv_even20/weighted_unifrac_3d_continuous/weighted_unifrac_pc_3D_PCoA_plots.html +++ /dev/null @@ -1,340 +0,0 @@ -
') : '';
- }
-}
-
-// Quotes Multi word font names; needed for CSS Standards adherence in font-family
-function quoteMultiNameFonts(theFont) {
- var v, pM=theFont.split(',');
- for (var i=0; i 0) clearTimeout(o3_timerid);
-
- o3_timerid=setTimeout("cClick()",(o3_timeout=time));
- }
-}
-
-// Was originally in the placeLayer() routine; separated out for future ease
-function horizontalPlacement(browserWidth, horizontalScrollAmount, widthFix) {
- var placeX, iwidth=browserWidth, winoffset=horizontalScrollAmount;
- var parsedWidth = parseInt(o3_width);
-
- if (o3_fixx > -1 || o3_relx != null) {
- // Fixed position
- placeX=(o3_relx != null ? ( o3_relx < 0 ? winoffset +o3_relx+ iwidth - parsedWidth - widthFix : winoffset+o3_relx) : o3_fixx);
- } else {
- // If HAUTO, decide what to use.
- if (o3_hauto == 1) {
- if ((o3_x - winoffset) > (iwidth / 2)) {
- o3_hpos = LEFT;
- } else {
- o3_hpos = RIGHT;
- }
- }
-
- // From mouse
- if (o3_hpos == CENTER) { // Center
- placeX = o3_x+o3_offsetx-(parsedWidth/2);
-
- if (placeX < winoffset) placeX = winoffset;
- }
-
- if (o3_hpos == RIGHT) { // Right
- placeX = o3_x+o3_offsetx;
-
- if ((placeX+parsedWidth) > (winoffset+iwidth - widthFix)) {
- placeX = iwidth+winoffset - parsedWidth - widthFix;
- if (placeX < 0) placeX = 0;
- }
- }
- if (o3_hpos == LEFT) { // Left
- placeX = o3_x-o3_offsetx-parsedWidth;
- if (placeX < winoffset) placeX = winoffset;
- }
-
- // Snapping!
- if (o3_snapx > 1) {
- var snapping = placeX % o3_snapx;
-
- if (o3_hpos == LEFT) {
- placeX = placeX - (o3_snapx+snapping);
- } else {
- // CENTER and RIGHT
- placeX = placeX+(o3_snapx - snapping);
- }
-
- if (placeX < winoffset) placeX = winoffset;
- }
- }
-
- return placeX;
-}
-
-// was originally in the placeLayer() routine; separated out for future ease
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- var placeY, iheight=browserHeight, scrolloffset=verticalScrollAmount;
- var parsedHeight=(o3_aboveheight ? parseInt(o3_aboveheight) : (olNs4 ? over.clip.height : over.offsetHeight));
-
- if (o3_fixy > -1 || o3_rely != null) {
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- } else {
- // If VAUTO, decide what to use.
- if (o3_vauto == 1) {
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- o3_vpos = ABOVE;
- } else if (o3_vpos == ABOVE && (o3_y - (parsedHeight + o3_offsety) - scrolloffset < 0)) {
- o3_vpos = BELOW;
- }
- }
-
- // From mouse
- if (o3_vpos == ABOVE) {
- if (o3_aboveheight == 0) o3_aboveheight = parsedHeight;
-
- placeY = o3_y - (o3_aboveheight+o3_offsety);
- if (placeY < scrolloffset) placeY = scrolloffset;
- } else {
- // BELOW
- placeY = o3_y+o3_offsety;
- }
-
- // Snapping!
- if (o3_snapy > 1) {
- var snapping = placeY % o3_snapy;
-
- if (o3_aboveheight > 0 && o3_vpos == ABOVE) {
- placeY = placeY - (o3_snapy+snapping);
- } else {
- placeY = placeY+(o3_snapy - snapping);
- }
-
- if (placeY < scrolloffset) placeY = scrolloffset;
- }
- }
-
- return placeY;
-}
-
-// checks positioning flags
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- if (olHautoFlag) olHautoFlag = o3_hauto=0;
- if (olVautoFlag) olVautoFlag = o3_vauto=0;
- return true;
-}
-
-// get Browser window width
-function windowWidth() {
- var w;
- if (o3_frame.innerWidth) w=o3_frame.innerWidth;
- else if (eval('o3_frame.'+docRoot)&&eval("typeof o3_frame."+docRoot+".clientWidth=='number'")&&eval('o3_frame.'+docRoot+'.clientWidth'))
- w=eval('o3_frame.'+docRoot+'.clientWidth');
- return w;
-}
-
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-function createDivContainer(id,frm,zValue) {
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- var objRef, divContainer = layerReference(id);
-
- if (divContainer == null) {
- if (olNs4) {
- divContainer = frm.document.layers[id] = new Layer(window.innerWidth, frm);
- objRef = divContainer;
- } else {
- var body = (olIe4 ? frm.document.all.tags('BODY')[0] : frm.document.getElementsByTagName("BODY")[0]);
- if (olIe4&&!document.getElementById) {
- body.insertAdjacentHTML("beforeEnd",'');
- divContainer=layerReference(id);
- } else {
- divContainer = frm.document.createElement("DIV");
- divContainer.id = id;
- body.appendChild(divContainer);
- }
- objRef = divContainer.style;
- }
-
- objRef.position = 'absolute';
- objRef.visibility = 'hidden';
- objRef.zIndex = zValue;
- if (olIe4&&!olOp) objRef.left = objRef.top = '0px';
- else objRef.left = objRef.top = -10000 + (!olNs4 ? 'px' : 0);
- }
-
- return divContainer;
-}
-
-// get reference to a layer with ID=id
-function layerReference(id) {
- return (olNs4 ? o3_frame.document.layers[id] : (document.all ? o3_frame.document.all[id] : o3_frame.document.getElementById(id)));
-}
-////////
-// UTILITY FUNCTIONS
-////////
-
-// Checks if something is a function.
-function isFunction(fnRef) {
- var rtn = true;
-
- if (typeof fnRef == 'object') {
- for (var i = 0; i < fnRef.length; i++) {
- if (typeof fnRef[i]=='function') continue;
- rtn = false;
- break;
- }
- } else if (typeof fnRef != 'function') {
- rtn = false;
- }
-
- return rtn;
-}
-
-// Converts an array into an argument string for use in eval.
-function argToString(array, strtInd, argName) {
- var jS = strtInd, aS = '', ar = array;
- argName=(argName ? argName : 'ar');
-
- if (ar.length > jS) {
- for (var k = jS; k < ar.length; k++) aS += argName+'['+k+'], ';
- aS = aS.substring(0, aS.length-2);
- }
-
- return aS;
-}
-
-// Places a hook in the correct position in a hook point.
-function reOrder(hookPt, fnRef, order) {
- var newPt = new Array(), match, i, j;
-
- if (!order || typeof order == 'undefined' || typeof order == 'number') return hookPt;
-
- if (typeof order=='function') {
- if (typeof fnRef=='object') {
- newPt = newPt.concat(fnRef);
- } else {
- newPt[newPt.length++]=fnRef;
- }
-
- for (i = 0; i < hookPt.length; i++) {
- match = false;
- if (typeof fnRef == 'function' && hookPt[i] == fnRef) {
- continue;
- } else {
- for(j = 0; j < fnRef.length; j++) if (hookPt[i] == fnRef[j]) {
- match = true;
- break;
- }
- }
- if (!match) newPt[newPt.length++] = hookPt[i];
- }
-
- newPt[newPt.length++] = order;
-
- } else if (typeof order == 'object') {
- if (typeof fnRef == 'object') {
- newPt = newPt.concat(fnRef);
- } else {
- newPt[newPt.length++] = fnRef;
- }
-
- for (j = 0; j < hookPt.length; j++) {
- match = false;
- if (typeof fnRef == 'function' && hookPt[j] == fnRef) {
- continue;
- } else {
- for (i = 0; i < fnRef.length; i++) if (hookPt[j] == fnRef[i]) {
- match = true;
- break;
- }
- }
- if (!match) newPt[newPt.length++]=hookPt[j];
- }
-
- for (i = 0; i < newPt.length; i++) hookPt[i] = newPt[i];
- newPt.length = 0;
-
- for (j = 0; j < hookPt.length; j++) {
- match = false;
- for (i = 0; i < order.length; i++) {
- if (hookPt[j] == order[i]) {
- match = true;
- break;
- }
- }
- if (!match) newPt[newPt.length++] = hookPt[j];
- }
- newPt = newPt.concat(order);
- }
-
- hookPt = newPt;
-
- return hookPt;
-}
-
-////////
-// PLUGIN ACTIVATION FUNCTIONS
-////////
-
-// Runs plugin functions to set runtime variables.
-function setRunTimeVariables(){
- if (typeof runTime != 'undefined' && runTime.length) {
- for (var k = 0; k < runTime.length; k++) {
- runTime[k]();
- }
- }
-}
-
-// Runs plugin functions to parse commands.
-function parseCmdLine(pf, i, args) {
- if (typeof cmdLine != 'undefined' && cmdLine.length) {
- for (var k = 0; k < cmdLine.length; k++) {
- var j = cmdLine[k](pf, i, args);
- if (j >- 1) {
- i = j;
- break;
- }
- }
- }
-
- return i;
-}
-
-// Runs plugin functions to do things after parse.
-function postParseChecks(pf,args){
- if (typeof postParse != 'undefined' && postParse.length) {
- for (var k = 0; k < postParse.length; k++) {
- if (postParse[k](pf,args)) continue;
- return false; // end now since have an error
- }
- }
- return true;
-}
-
-
-////////
-// PLUGIN REGISTRATION FUNCTIONS
-////////
-
-// Registers commands and creates constants.
-function registerCommands(cmdStr) {
- if (typeof cmdStr!='string') return;
-
- var pM = cmdStr.split(',');
- pms = pms.concat(pM);
-
- for (var i = 0; i< pM.length; i++) {
- eval(pM[i].toUpperCase()+'='+pmCount++);
- }
-}
-
-// Registers no-parameter commands
-function registerNoParameterCommands(cmdStr) {
- if (!cmdStr && typeof cmdStr != 'string') return;
- pmt=(!pmt) ? cmdStr : pmt + ',' + cmdStr;
-}
-
-// Register a function to hook at a certain point.
-function registerHook(fnHookTo, fnRef, hookType, optPm) {
- var hookPt, last = typeof optPm;
-
- if (fnHookTo == 'plgIn'||fnHookTo == 'postParse') return;
- if (typeof hookPts[fnHookTo] == 'undefined') hookPts[fnHookTo] = new FunctionReference();
-
- hookPt = hookPts[fnHookTo];
-
- if (hookType != null) {
- if (hookType == FREPLACE) {
- hookPt.ovload = fnRef; // replace normal overlib routine
- if (fnHookTo.indexOf('ol_content_') > -1) hookPt.alt[pms[CSSOFF-1-pmStart]]=fnRef;
-
- } else if (hookType == FBEFORE || hookType == FAFTER) {
- var hookPt=(hookType == 1 ? hookPt.before : hookPt.after);
-
- if (typeof fnRef == 'object') {
- hookPt = hookPt.concat(fnRef);
- } else {
- hookPt[hookPt.length++] = fnRef;
- }
-
- if (optPm) hookPt = reOrder(hookPt, fnRef, optPm);
-
- } else if (hookType == FALTERNATE) {
- if (last=='number') hookPt.alt[pms[optPm-1-pmStart]] = fnRef;
- } else if (hookType == FCHAIN) {
- hookPt = hookPt.chain;
- if (typeof fnRef=='object') hookPt=hookPt.concat(fnRef); // add other functions
- else hookPt[hookPt.length++]=fnRef;
- }
-
- return;
- }
-}
-
-// Register a function that will set runtime variables.
-function registerRunTimeFunction(fn) {
- if (isFunction(fn)) {
- if (typeof fn == 'object') {
- runTime = runTime.concat(fn);
- } else {
- runTime[runTime.length++] = fn;
- }
- }
-}
-
-// Register a function that will handle command parsing.
-function registerCmdLineFunction(fn){
- if (isFunction(fn)) {
- if (typeof fn == 'object') {
- cmdLine = cmdLine.concat(fn);
- } else {
- cmdLine[cmdLine.length++] = fn;
- }
- }
-}
-
-// Register a function that does things after command parsing.
-function registerPostParseFunction(fn){
- if (isFunction(fn)) {
- if (typeof fn == 'object') {
- postParse = postParse.concat(fn);
- } else {
- postParse[postParse.length++] = fn;
- }
- }
-}
-
-////////
-// PLUGIN REGISTRATION FUNCTIONS
-////////
-
-// Runs any hooks registered.
-function runHook(fnHookTo, hookType) {
- var l = hookPts[fnHookTo], k, rtnVal = null, optPm, arS, ar = runHook.arguments;
-
- if (hookType == FREPLACE) {
- arS = argToString(ar, 2);
-
- if (typeof l == 'undefined' || !(l = l.ovload)) rtnVal = eval(fnHookTo+'('+arS+')');
- else rtnVal = eval('l('+arS+')');
-
- } else if (hookType == FBEFORE || hookType == FAFTER) {
- if (typeof l != 'undefined') {
- l=(hookType == 1 ? l.before : l.after);
-
- if (l.length) {
- arS = argToString(ar, 2);
- for (var k = 0; k < l.length; k++) eval('l[k]('+arS+')');
- }
- }
- } else if (hookType == FALTERNATE) {
- optPm = ar[2];
- arS = argToString(ar, 3);
-
- if (typeof l == 'undefined' || (l = l.alt[pms[optPm-1-pmStart]]) == 'undefined') {
- rtnVal = eval(fnHookTo+'('+arS+')');
- } else {
- rtnVal = eval('l('+arS+')');
- }
- } else if (hookType == FCHAIN) {
- arS=argToString(ar,2);
- l=l.chain;
-
- for (k=l.length; k > 0; k--) if((rtnVal=eval('l[k-1]('+arS+')'))!=void(0)) break;
- }
-
- return rtnVal;
-}
-
-////////
-// OBJECT CONSTRUCTORS
-////////
-
-// Object for handling hooks.
-function FunctionReference() {
- this.ovload = null;
- this.before = new Array();
- this.after = new Array();
- this.alt = new Array();
- this.chain = new Array();
-}
-
-// Object for simple access to the overLIB version used.
-// Examples: simpleversion:351 major:3 minor:5 revision:1
-function Info(version, prerelease) {
- this.version = version;
- this.prerelease = prerelease;
-
- this.simpleversion = Math.round(this.version*100);
- this.major = parseInt(this.simpleversion / 100);
- this.minor = parseInt(this.simpleversion / 10) - this.major * 10;
- this.revision = parseInt(this.simpleversion) - this.major * 100 - this.minor * 10;
- this.meets = meets;
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-
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-}
-
-
-////////
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-////////
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-registerHook("ol_content_caption", ol_content_caption, FALTERNATE, CSSOFF);
-registerHook("ol_content_background", ol_content_background, FALTERNATE, CSSOFF);
-registerHook("ol_content_simple", ol_content_simple, FALTERNATE, CSSCLASS);
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-registerHook("ol_content_background", ol_content_background, FALTERNATE, CSSCLASS);
-registerPostParseFunction(checkPositionFlags);
-registerHook("hideObject", nbspCleanup, FAFTER);
-registerHook("horizontalPlacement", horizontalPlacement, FCHAIN);
-registerHook("verticalPlacement", verticalPlacement, FCHAIN);
-if (olNs4||(olIe5&&isMac)||olKq) olLoaded=1;
-registerNoParameterCommands('sticky,autostatus,autostatuscap,fullhtml,hauto,vauto,closeclick,wrap,followmouse,mouseoff,compatmode');
-///////
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- olMouseCapture();
-} else {
- overlib = no_overlib;
- nd = no_overlib;
- ver3fix = true;
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diff --git a/core_diversity_analyses/core_output/taxa_plots/taxa_summary_plots/raw_data/otu_table_sorted_L2.txt b/core_diversity_analyses/core_output/taxa_plots/taxa_summary_plots/raw_data/otu_table_sorted_L2.txt
deleted file mode 100644
index 09301a2..0000000
--- a/core_diversity_analyses/core_output/taxa_plots/taxa_summary_plots/raw_data/otu_table_sorted_L2.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-Taxon f1 f2 f3 f4 not16S.1 p1 p2 t1 t2
-Unclassified;Other 0.0 0.0454545454545 0.0 0.0 0.909090909091 0.130434782609 0.272727272727 0.869565217391 0.681818181818
-k__Bacteria;Other 1.0 0.954545454545 1.0 1.0 0.0909090909091 0.869565217391 0.681818181818 0.130434782609 0.318181818182
-k__Bacteria;p__Proteobacteria 0.0 0.0 0.0 0.0 0.0 0.0 0.0454545454545 0.0 0.0
diff --git a/core_diversity_analyses/core_output/taxa_plots/taxa_summary_plots/raw_data/otu_table_sorted_L3.txt b/core_diversity_analyses/core_output/taxa_plots/taxa_summary_plots/raw_data/otu_table_sorted_L3.txt
deleted file mode 100644
index a2cb83c..0000000
--- a/core_diversity_analyses/core_output/taxa_plots/taxa_summary_plots/raw_data/otu_table_sorted_L3.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-Taxon f1 f2 f3 f4 not16S.1 p1 p2 t1 t2
-Unclassified;Other;Other 0.0 0.0454545454545 0.0 0.0 0.909090909091 0.130434782609 0.272727272727 0.869565217391 0.681818181818
-k__Bacteria;Other;Other 1.0 0.954545454545 1.0 1.0 0.0909090909091 0.869565217391 0.681818181818 0.130434782609 0.318181818182
-k__Bacteria;p__Proteobacteria;Other 0.0 0.0 0.0 0.0 0.0 0.0 0.0454545454545 0.0 0.0
diff --git a/core_diversity_analyses/core_output/taxa_plots/taxa_summary_plots/raw_data/otu_table_sorted_L4.txt b/core_diversity_analyses/core_output/taxa_plots/taxa_summary_plots/raw_data/otu_table_sorted_L4.txt
deleted file mode 100644
index 80d739d..0000000
--- a/core_diversity_analyses/core_output/taxa_plots/taxa_summary_plots/raw_data/otu_table_sorted_L4.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-Taxon f1 f2 f3 f4 not16S.1 p1 p2 t1 t2
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-k__Bacteria;Other;Other;Other 1.0 0.954545454545 1.0 1.0 0.0909090909091 0.869565217391 0.681818181818 0.130434782609 0.318181818182
-k__Bacteria;p__Proteobacteria;Other;Other 0.0 0.0 0.0 0.0 0.0 0.0 0.0454545454545 0.0 0.0
diff --git a/core_diversity_analyses/core_output/taxa_plots/taxa_summary_plots/raw_data/otu_table_sorted_L5.txt b/core_diversity_analyses/core_output/taxa_plots/taxa_summary_plots/raw_data/otu_table_sorted_L5.txt
deleted file mode 100644
index 51df409..0000000
--- a/core_diversity_analyses/core_output/taxa_plots/taxa_summary_plots/raw_data/otu_table_sorted_L5.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-Taxon f1 f2 f3 f4 not16S.1 p1 p2 t1 t2
-Unclassified;Other;Other;Other;Other 0.0 0.0454545454545 0.0 0.0 0.909090909091 0.130434782609 0.272727272727 0.869565217391 0.681818181818
-k__Bacteria;Other;Other;Other;Other 1.0 0.954545454545 1.0 1.0 0.0909090909091 0.869565217391 0.681818181818 0.130434782609 0.318181818182
-k__Bacteria;p__Proteobacteria;Other;Other;Other 0.0 0.0 0.0 0.0 0.0 0.0 0.0454545454545 0.0 0.0
diff --git a/core_diversity_analyses/core_output/taxa_plots/taxa_summary_plots/raw_data/otu_table_sorted_L6.txt b/core_diversity_analyses/core_output/taxa_plots/taxa_summary_plots/raw_data/otu_table_sorted_L6.txt
deleted file mode 100644
index b57de63..0000000
--- a/core_diversity_analyses/core_output/taxa_plots/taxa_summary_plots/raw_data/otu_table_sorted_L6.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-Taxon f1 f2 f3 f4 not16S.1 p1 p2 t1 t2
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diff --git a/core_diversity_analyses/core_output/taxa_plots_SampleType/SampleType_otu_table.biom b/core_diversity_analyses/core_output/taxa_plots_SampleType/SampleType_otu_table.biom
deleted file mode 100644
index 2949836..0000000
--- a/core_diversity_analyses/core_output/taxa_plots_SampleType/SampleType_otu_table.biom
+++ /dev/null
@@ -1 +0,0 @@
-{"id": "None","format": "Biological Observation Matrix 1.0.0","format_url": "http://biom-format.org","type": "OTU table","generated_by": "QIIME 1.6.0-dev","date": "2013-02-09T19:02:20.008501","matrix_type": "sparse","matrix_element_type": "float","shape": [14, 4],"data": [[0,1,78.0],[0,3,4.0],[1,3,1.0],[2,1,1.0],[2,3,2.0],[3,0,1.0],[4,3,1.0],[5,2,20.0],[6,3,1.0],[7,3,2.0],[8,0,5.0],[8,3,1.0],[9,2,2.0],[10,3,1.0],[11,0,5.0],[11,3,29.0],[12,0,34.0],[12,3,3.0],[13,1,9.0]],"rows": [{"id": "295053", "metadata": {"taxonomy": ["k__Bacteria"]}},{"id": "42684", "metadata": {"taxonomy": ["k__Bacteria", "p__Proteobacteria"]}},{"id": "None11", "metadata": {"taxonomy": ["Unclassified"]}},{"id": "None10", "metadata": {"taxonomy": ["Unclassified"]}},{"id": "None7", "metadata": {"taxonomy": ["Unclassified"]}},{"id": "None6", "metadata": {"taxonomy": ["Unclassified"]}},{"id": "None5", "metadata": {"taxonomy": ["k__Bacteria"]}},{"id": "None4", "metadata": {"taxonomy": ["Unclassified"]}},{"id": "None3", "metadata": {"taxonomy": ["k__Bacteria"]}},{"id": "None2", "metadata": {"taxonomy": ["k__Bacteria"]}},{"id": "None1", "metadata": {"taxonomy": ["Unclassified"]}},{"id": "879972", "metadata": {"taxonomy": ["k__Bacteria"]}},{"id": "None9", "metadata": {"taxonomy": ["Unclassified"]}},{"id": "None8", "metadata": {"taxonomy": ["k__Bacteria"]}}],"columns": [{"id": "Tongue", "metadata": {"t2": {"days_since_epoch": "14174", "Description": "tongue2", "SampleType": "Tongue", "BarcodeSequence": "ATACTATTGCGC", "month": "10", "LinkerPrimerSequence": "GTGCCAGCMGCCGCGGTAA", "year": "2008", "day": "22", "subject": "1"}, "t1": {"days_since_epoch": "14173", "Description": "tongue1, contains one randomly generated sequence", "SampleType": "Tongue", "BarcodeSequence": "AGTGAGAGAAGC", "month": "10", "LinkerPrimerSequence": "GTGCCAGCMGCCGCGGTAA", "year": "2008", "day": "21", "subject": "1"}}},{"id": "feces", "metadata": {"f1": {"days_since_epoch": "14174", "Description": "fecal1", "SampleType": "feces", "BarcodeSequence": "ACACTGTTCATG", "month": "10", "LinkerPrimerSequence": "GTGCCAGCMGCCGCGGTAA", "year": "2008", "day": "22", "subject": "1"}, "f2": {"days_since_epoch": "14175", "Description": "fecal2", "SampleType": "feces", "BarcodeSequence": "ACCAGACGATGC", "month": "10", "LinkerPrimerSequence": "GTGCCAGCMGCCGCGGTAA", "year": "2008", "day": "23", "subject": "1"}, "f3": {"days_since_epoch": "14175", "Description": "identical sequences to fecal2", "SampleType": "feces", "BarcodeSequence": "ACCAGACGATGC", "month": "10", "LinkerPrimerSequence": "GTGCCAGCMGCCGCGGTAA", "year": "2008", "day": "23", "subject": "1"}, "f4": {"days_since_epoch": "14175", "Description": "all sequences identical, map to GG 295053 at 97 percent id", "SampleType": "feces", "BarcodeSequence": "ACCAGACGATGC", "month": "10", "LinkerPrimerSequence": "GTGCCAGCMGCCGCGGTAA", "year": "2008", "day": "23", "subject": "1"}}},{"id": "Other", "metadata": {"not16S.1": {"days_since_epoch": "14174", "Description": "randomly generated sequence plus some variants, these should not map to 16S", "SampleType": "Other", "BarcodeSequence": "ATACTATTGCGC", "month": "10", "LinkerPrimerSequence": "GTGCCAGCMGCCGCGGTAA", "year": "2008", "day": "22", "subject": "1"}}},{"id": "L_palm", "metadata": {"p2": {"days_since_epoch": "14174", "Description": "palm2", "SampleType": "L_palm", "BarcodeSequence": "ACACTGTTCATG", "month": "10", "LinkerPrimerSequence": "GTGCCAGCMGCCGCGGTAA", "year": "2008", "day": "22", "subject": "1"}, "p1": {"days_since_epoch": "14173", "Description": "palm1, contains one randomly generated sequence", "SampleType": "L_palm", "BarcodeSequence": "AACGCACGCTAG", "month": "10", "LinkerPrimerSequence": "GTGCCAGCMGCCGCGGTAA", "year": "2008", "day": "21", "subject": "1"}}}]}
\ No newline at end of file
diff --git a/core_diversity_analyses/core_output/taxa_plots_SampleType/SampleType_otu_table_sorted.biom b/core_diversity_analyses/core_output/taxa_plots_SampleType/SampleType_otu_table_sorted.biom
deleted file mode 100644
index 847c4e6..0000000
--- a/core_diversity_analyses/core_output/taxa_plots_SampleType/SampleType_otu_table_sorted.biom
+++ /dev/null
@@ -1 +0,0 @@
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\ No newline at end of file
diff --git a/core_diversity_analyses/core_output/taxa_plots_SampleType/SampleType_otu_table_sorted_L2.txt b/core_diversity_analyses/core_output/taxa_plots_SampleType/SampleType_otu_table_sorted_L2.txt
deleted file mode 100644
index 29db02f..0000000
--- a/core_diversity_analyses/core_output/taxa_plots_SampleType/SampleType_otu_table_sorted_L2.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-Taxon feces L_palm Other Tongue
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diff --git a/core_diversity_analyses/core_output/taxa_plots_SampleType/SampleType_otu_table_sorted_L3.txt b/core_diversity_analyses/core_output/taxa_plots_SampleType/SampleType_otu_table_sorted_L3.txt
deleted file mode 100644
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--- a/core_diversity_analyses/core_output/taxa_plots_SampleType/SampleType_otu_table_sorted_L3.txt
+++ /dev/null
@@ -1,4 +0,0 @@
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diff --git a/core_diversity_analyses/core_output/taxa_plots_SampleType/SampleType_otu_table_sorted_L4.txt b/core_diversity_analyses/core_output/taxa_plots_SampleType/SampleType_otu_table_sorted_L4.txt
deleted file mode 100644
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--- a/core_diversity_analyses/core_output/taxa_plots_SampleType/SampleType_otu_table_sorted_L4.txt
+++ /dev/null
@@ -1,4 +0,0 @@
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diff --git a/core_diversity_analyses/core_output/taxa_plots_SampleType/SampleType_otu_table_sorted_L5.txt b/core_diversity_analyses/core_output/taxa_plots_SampleType/SampleType_otu_table_sorted_L5.txt
deleted file mode 100644
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--- a/core_diversity_analyses/core_output/taxa_plots_SampleType/SampleType_otu_table_sorted_L5.txt
+++ /dev/null
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diff --git a/core_diversity_analyses/core_output/taxa_plots_SampleType/SampleType_otu_table_sorted_L6.txt b/core_diversity_analyses/core_output/taxa_plots_SampleType/SampleType_otu_table_sorted_L6.txt
deleted file mode 100644
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--- a/core_diversity_analyses/core_output/taxa_plots_SampleType/SampleType_otu_table_sorted_L6.txt
+++ /dev/null
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deleted file mode 100644
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-if (typeof ol_fgcolor=='undefined') var ol_fgcolor="#CCCCFF";
-if (typeof ol_bgcolor=='undefined') var ol_bgcolor="#333399";
-if (typeof ol_textcolor=='undefined') var ol_textcolor="#000000";
-if (typeof ol_capcolor=='undefined') var ol_capcolor="#FFFFFF";
-if (typeof ol_closecolor=='undefined') var ol_closecolor="#9999FF";
-if (typeof ol_textfont=='undefined') var ol_textfont="Verdana,Arial,Helvetica";
-if (typeof ol_captionfont=='undefined') var ol_captionfont="Verdana,Arial,Helvetica";
-if (typeof ol_closefont=='undefined') var ol_closefont="Verdana,Arial,Helvetica";
-if (typeof ol_textsize=='undefined') var ol_textsize="1";
-if (typeof ol_captionsize=='undefined') var ol_captionsize="1";
-if (typeof ol_closesize=='undefined') var ol_closesize="1";
-if (typeof ol_width=='undefined') var ol_width="200";
-if (typeof ol_border=='undefined') var ol_border="1";
-if (typeof ol_cellpad=='undefined') var ol_cellpad=2;
-if (typeof ol_offsetx=='undefined') var ol_offsetx=10;
-if (typeof ol_offsety=='undefined') var ol_offsety=10;
-if (typeof ol_text=='undefined') var ol_text="Default Text";
-if (typeof ol_cap=='undefined') var ol_cap="";
-if (typeof ol_sticky=='undefined') var ol_sticky=0;
-if (typeof ol_background=='undefined') var ol_background="";
-if (typeof ol_close=='undefined') var ol_close="Close";
-if (typeof ol_hpos=='undefined') var ol_hpos=RIGHT;
-if (typeof ol_status=='undefined') var ol_status="";
-if (typeof ol_autostatus=='undefined') var ol_autostatus=0;
-if (typeof ol_height=='undefined') var ol_height=-1;
-if (typeof ol_snapx=='undefined') var ol_snapx=0;
-if (typeof ol_snapy=='undefined') var ol_snapy=0;
-if (typeof ol_fixx=='undefined') var ol_fixx=-1;
-if (typeof ol_fixy=='undefined') var ol_fixy=-1;
-if (typeof ol_relx=='undefined') var ol_relx=null;
-if (typeof ol_rely=='undefined') var ol_rely=null;
-if (typeof ol_fgbackground=='undefined') var ol_fgbackground="";
-if (typeof ol_bgbackground=='undefined') var ol_bgbackground="";
-if (typeof ol_padxl=='undefined') var ol_padxl=1;
-if (typeof ol_padxr=='undefined') var ol_padxr=1;
-if (typeof ol_padyt=='undefined') var ol_padyt=1;
-if (typeof ol_padyb=='undefined') var ol_padyb=1;
-if (typeof ol_fullhtml=='undefined') var ol_fullhtml=0;
-if (typeof ol_vpos=='undefined') var ol_vpos=BELOW;
-if (typeof ol_aboveheight=='undefined') var ol_aboveheight=0;
-if (typeof ol_capicon=='undefined') var ol_capicon="";
-if (typeof ol_frame=='undefined') var ol_frame=self;
-if (typeof ol_timeout=='undefined') var ol_timeout=0;
-if (typeof ol_function=='undefined') var ol_function=null;
-if (typeof ol_delay=='undefined') var ol_delay=0;
-if (typeof ol_hauto=='undefined') var ol_hauto=0;
-if (typeof ol_vauto=='undefined') var ol_vauto=0;
-if (typeof ol_closeclick=='undefined') var ol_closeclick=0;
-if (typeof ol_wrap=='undefined') var ol_wrap=0;
-if (typeof ol_followmouse=='undefined') var ol_followmouse=1;
-if (typeof ol_mouseoff=='undefined') var ol_mouseoff=0;
-if (typeof ol_closetitle=='undefined') var ol_closetitle='Close';
-if (typeof ol_compatmode=='undefined') var ol_compatmode=0;
-if (typeof ol_css=='undefined') var ol_css=CSSOFF;
-if (typeof ol_fgclass=='undefined') var ol_fgclass="";
-if (typeof ol_bgclass=='undefined') var ol_bgclass="";
-if (typeof ol_textfontclass=='undefined') var ol_textfontclass="";
-if (typeof ol_captionfontclass=='undefined') var ol_captionfontclass="";
-if (typeof ol_closefontclass=='undefined') var ol_closefontclass="";
-
-////////
-// ARRAY CONFIGURATION
-////////
-
-// You can use these arrays to store popup text here instead of in the html.
-if (typeof ol_texts=='undefined') var ol_texts = new Array("Text 0", "Text 1");
-if (typeof ol_caps=='undefined') var ol_caps = new Array("Caption 0", "Caption 1");
-
-////////
-// END OF CONFIGURATION
-// Don't change anything below this line, all configuration is above.
-////////
-
-
-
-
-
-////////
-// INIT
-////////
-// Runtime variables init. Don't change for config!
-var o3_text="";
-var o3_cap="";
-var o3_sticky=0;
-var o3_background="";
-var o3_close="Close";
-var o3_hpos=RIGHT;
-var o3_offsetx=2;
-var o3_offsety=2;
-var o3_fgcolor="";
-var o3_bgcolor="";
-var o3_textcolor="";
-var o3_capcolor="";
-var o3_closecolor="";
-var o3_width=100;
-var o3_border=1;
-var o3_cellpad=2;
-var o3_status="";
-var o3_autostatus=0;
-var o3_height=-1;
-var o3_snapx=0;
-var o3_snapy=0;
-var o3_fixx=-1;
-var o3_fixy=-1;
-var o3_relx=null;
-var o3_rely=null;
-var o3_fgbackground="";
-var o3_bgbackground="";
-var o3_padxl=0;
-var o3_padxr=0;
-var o3_padyt=0;
-var o3_padyb=0;
-var o3_fullhtml=0;
-var o3_vpos=BELOW;
-var o3_aboveheight=0;
-var o3_capicon="";
-var o3_textfont="Verdana,Arial,Helvetica";
-var o3_captionfont="Verdana,Arial,Helvetica";
-var o3_closefont="Verdana,Arial,Helvetica";
-var o3_textsize="1";
-var o3_captionsize="1";
-var o3_closesize="1";
-var o3_frame=self;
-var o3_timeout=0;
-var o3_timerid=0;
-var o3_allowmove=0;
-var o3_function=null;
-var o3_delay=0;
-var o3_delayid=0;
-var o3_hauto=0;
-var o3_vauto=0;
-var o3_closeclick=0;
-var o3_wrap=0;
-var o3_followmouse=1;
-var o3_mouseoff=0;
-var o3_closetitle='';
-var o3_compatmode=0;
-var o3_css=CSSOFF;
-var o3_fgclass="";
-var o3_bgclass="";
-var o3_textfontclass="";
-var o3_captionfontclass="";
-var o3_closefontclass="";
-
-// Display state variables
-var o3_x = 0;
-var o3_y = 0;
-var o3_showingsticky = 0;
-var o3_removecounter = 0;
-
-// Our layer
-var over = null;
-var fnRef, hoveringSwitch = false;
-var olHideDelay;
-
-// Decide browser version
-var isMac = (navigator.userAgent.indexOf("Mac") != -1);
-var olOp = (navigator.userAgent.toLowerCase().indexOf('opera') > -1 && document.createTextNode); // Opera 7
-var olNs4 = (navigator.appName=='Netscape' && parseInt(navigator.appVersion) == 4);
-var olNs6 = (document.getElementById) ? true : false;
-var olKq = (olNs6 && /konqueror/i.test(navigator.userAgent));
-var olIe4 = (document.all) ? true : false;
-var olIe5 = false;
-var olIe55 = false; // Added additional variable to identify IE5.5+
-var docRoot = 'document.body';
-
-// Resize fix for NS4.x to keep track of layer
-if (olNs4) {
- var oW = window.innerWidth;
- var oH = window.innerHeight;
- window.onresize = function() { if (oW != window.innerWidth || oH != window.innerHeight) location.reload(); }
-}
-
-// Microsoft Stupidity Check(tm).
-if (olIe4) {
- var agent = navigator.userAgent;
- if (/MSIE/.test(agent)) {
- var versNum = parseFloat(agent.match(/MSIE[ ](\d\.\d+)\.*/i)[1]);
- if (versNum >= 5){
- olIe5=true;
- olIe55=(versNum>=5.5&&!olOp) ? true : false;
- if (olNs6) olNs6=false;
- }
- }
- if (olNs6) olIe4 = false;
-}
-
-// Check for compatability mode.
-if (document.compatMode && document.compatMode == 'CSS1Compat') {
- docRoot= ((olIe4 && !olOp) ? 'document.documentElement' : docRoot);
-}
-
-// Add window onload handlers to indicate when all modules have been loaded
-// For Netscape 6+ and Mozilla, uses addEventListener method on the window object
-// For IE it uses the attachEvent method of the window object and for Netscape 4.x
-// it sets the window.onload handler to the OLonload_handler function for Bubbling
-if(window.addEventListener) window.addEventListener("load",OLonLoad_handler,false);
-else if (window.attachEvent) window.attachEvent("onload",OLonLoad_handler);
-
-var capExtent;
-
-////////
-// PUBLIC FUNCTIONS
-////////
-
-// overlib(arg0,...,argN)
-// Loads parameters into global runtime variables.
-function overlib() {
- if (!olLoaded || isExclusive(overlib.arguments)) return true;
- if (olCheckMouseCapture) olMouseCapture();
- if (over) {
- over = (typeof over.id != 'string') ? o3_frame.document.all['overDiv'] : over;
- cClick();
- }
-
- // Load defaults to runtime.
- olHideDelay=0;
- o3_text=ol_text;
- o3_cap=ol_cap;
- o3_sticky=ol_sticky;
- o3_background=ol_background;
- o3_close=ol_close;
- o3_hpos=ol_hpos;
- o3_offsetx=ol_offsetx;
- o3_offsety=ol_offsety;
- o3_fgcolor=ol_fgcolor;
- o3_bgcolor=ol_bgcolor;
- o3_textcolor=ol_textcolor;
- o3_capcolor=ol_capcolor;
- o3_closecolor=ol_closecolor;
- o3_width=ol_width;
- o3_border=ol_border;
- o3_cellpad=ol_cellpad;
- o3_status=ol_status;
- o3_autostatus=ol_autostatus;
- o3_height=ol_height;
- o3_snapx=ol_snapx;
- o3_snapy=ol_snapy;
- o3_fixx=ol_fixx;
- o3_fixy=ol_fixy;
- o3_relx=ol_relx;
- o3_rely=ol_rely;
- o3_fgbackground=ol_fgbackground;
- o3_bgbackground=ol_bgbackground;
- o3_padxl=ol_padxl;
- o3_padxr=ol_padxr;
- o3_padyt=ol_padyt;
- o3_padyb=ol_padyb;
- o3_fullhtml=ol_fullhtml;
- o3_vpos=ol_vpos;
- o3_aboveheight=ol_aboveheight;
- o3_capicon=ol_capicon;
- o3_textfont=ol_textfont;
- o3_captionfont=ol_captionfont;
- o3_closefont=ol_closefont;
- o3_textsize=ol_textsize;
- o3_captionsize=ol_captionsize;
- o3_closesize=ol_closesize;
- o3_timeout=ol_timeout;
- o3_function=ol_function;
- o3_delay=ol_delay;
- o3_hauto=ol_hauto;
- o3_vauto=ol_vauto;
- o3_closeclick=ol_closeclick;
- o3_wrap=ol_wrap;
- o3_followmouse=ol_followmouse;
- o3_mouseoff=ol_mouseoff;
- o3_closetitle=ol_closetitle;
- o3_css=ol_css;
- o3_compatmode=ol_compatmode;
- o3_fgclass=ol_fgclass;
- o3_bgclass=ol_bgclass;
- o3_textfontclass=ol_textfontclass;
- o3_captionfontclass=ol_captionfontclass;
- o3_closefontclass=ol_closefontclass;
-
- setRunTimeVariables();
-
- fnRef = '';
-
- // Special for frame support, over must be reset...
- o3_frame = ol_frame;
-
- if(!(over=createDivContainer())) return false;
-
- parseTokens('o3_', overlib.arguments);
- if (!postParseChecks()) return false;
-
- if (o3_delay == 0) {
- return runHook("olMain", FREPLACE);
- } else {
- o3_delayid = setTimeout("runHook('olMain', FREPLACE)", o3_delay);
- return false;
- }
-}
-
-// Clears popups if appropriate
-function nd(time) {
- if (olLoaded && !isExclusive()) {
- hideDelay(time); // delay popup close if time specified
-
- if (o3_removecounter >= 1) { o3_showingsticky = 0 };
-
- if (o3_showingsticky == 0) {
- o3_allowmove = 0;
- if (over != null && o3_timerid == 0) runHook("hideObject", FREPLACE, over);
- } else {
- o3_removecounter++;
- }
- }
-
- return true;
-}
-
-// The Close onMouseOver function for stickies
-function cClick() {
- if (olLoaded) {
- runHook("hideObject", FREPLACE, over);
- o3_showingsticky = 0;
- }
- return false;
-}
-
-// Method for setting page specific defaults.
-function overlib_pagedefaults() {
- parseTokens('ol_', overlib_pagedefaults.arguments);
-}
-
-
-////////
-// OVERLIB MAIN FUNCTION
-////////
-
-// This function decides what it is we want to display and how we want it done.
-function olMain() {
- var layerhtml, styleType;
- runHook("olMain", FBEFORE);
-
- if (o3_background!="" || o3_fullhtml) {
- // Use background instead of box.
- layerhtml = runHook('ol_content_background', FALTERNATE, o3_css, o3_text, o3_background, o3_fullhtml);
- } else {
- // They want a popup box.
- styleType = (pms[o3_css-1-pmStart] == "cssoff" || pms[o3_css-1-pmStart] == "cssclass");
-
- // Prepare popup background
- if (o3_fgbackground != "") o3_fgbackground = "background=\""+o3_fgbackground+"\"";
- if (o3_bgbackground != "") o3_bgbackground = (styleType ? "background=\""+o3_bgbackground+"\"" : o3_bgbackground);
-
- // Prepare popup colors
- if (o3_fgcolor != "") o3_fgcolor = (styleType ? "bgcolor=\""+o3_fgcolor+"\"" : o3_fgcolor);
- if (o3_bgcolor != "") o3_bgcolor = (styleType ? "bgcolor=\""+o3_bgcolor+"\"" : o3_bgcolor);
-
- // Prepare popup height
- if (o3_height > 0) o3_height = (styleType ? "height=\""+o3_height+"\"" : o3_height);
- else o3_height = "";
-
- // Decide which kinda box.
- if (o3_cap=="") {
- // Plain
- layerhtml = runHook('ol_content_simple', FALTERNATE, o3_css, o3_text);
- } else {
- // With caption
- if (o3_sticky) {
- // Show close text
- layerhtml = runHook('ol_content_caption', FALTERNATE, o3_css, o3_text, o3_cap, o3_close);
- } else {
- // No close text
- layerhtml = runHook('ol_content_caption', FALTERNATE, o3_css, o3_text, o3_cap, "");
- }
- }
- }
-
- // We want it to stick!
- if (o3_sticky) {
- if (o3_timerid > 0) {
- clearTimeout(o3_timerid);
- o3_timerid = 0;
- }
- o3_showingsticky = 1;
- o3_removecounter = 0;
- }
-
- // Created a separate routine to generate the popup to make it easier
- // to implement a plugin capability
- if (!runHook("createPopup", FREPLACE, layerhtml)) return false;
-
- // Prepare status bar
- if (o3_autostatus > 0) {
- o3_status = o3_text;
- if (o3_autostatus > 1) o3_status = o3_cap;
- }
-
- // When placing the layer the first time, even stickies may be moved.
- o3_allowmove = 0;
-
- // Initiate a timer for timeout
- if (o3_timeout > 0) {
- if (o3_timerid > 0) clearTimeout(o3_timerid);
- o3_timerid = setTimeout("cClick()", o3_timeout);
- }
-
- // Show layer
- runHook("disp", FREPLACE, o3_status);
- runHook("olMain", FAFTER);
-
- return (olOp && event && event.type == 'mouseover' && !o3_status) ? '' : (o3_status != '');
-}
-
-////////
-// LAYER GENERATION FUNCTIONS
-////////
-// These functions just handle popup content with tags that should adhere to the W3C standards specification.
-
-// Makes simple table without caption
-function ol_content_simple(text) {
- var cpIsMultiple = /,/.test(o3_cellpad);
- var txt = '
';
-
- set_background("");
- return txt;
-}
-
-// Makes table with caption and optional close link
-function ol_content_caption(text,title,close) {
- var nameId, txt, cpIsMultiple = /,/.test(o3_cellpad);
- var closing, closeevent;
-
- closing = "";
- closeevent = "onmouseover";
- if (o3_closeclick == 1) closeevent = (o3_closetitle ? "title='" + o3_closetitle +"'" : "") + " onclick";
- if (o3_capicon != "") {
- nameId = ' hspace = \"5\"'+' align = \"middle\" alt = \"\"';
- if (typeof o3_dragimg != 'undefined' && o3_dragimg) nameId =' hspace=\"5\"'+' name=\"'+o3_dragimg+'\" id=\"'+o3_dragimg+'\" align=\"middle\" alt=\"Drag Enabled\" title=\"Drag Enabled\"';
- o3_capicon = '';
- }
-
- if (close != "")
- closing = ''+(o3_closefontclass ? '' : wrapStr(0,o3_closesize,'close'))+close+(o3_closefontclass ? '' : wrapStr(1,o3_closesize,'close'))+' ';
- txt = '
';
-
- set_background("");
- return txt;
-}
-
-// Sets the background picture,padding and lots more. :)
-function ol_content_background(text,picture,hasfullhtml) {
- if (hasfullhtml) {
- txt=text;
- } else {
- txt='
';
- }
-
- set_background(picture);
- return txt;
-}
-
-// Loads a picture into the div.
-function set_background(pic) {
- if (pic == "") {
- if (olNs4) {
- over.background.src = null;
- } else if (over.style) {
- over.style.backgroundImage = "none";
- }
- } else {
- if (olNs4) {
- over.background.src = pic;
- } else if (over.style) {
- over.style.width=o3_width + 'px';
- over.style.backgroundImage = "url("+pic+")";
- }
- }
-}
-
-////////
-// HANDLING FUNCTIONS
-////////
-var olShowId=-1;
-
-// Displays the popup
-function disp(statustext) {
- runHook("disp", FBEFORE);
-
- if (o3_allowmove == 0) {
- runHook("placeLayer", FREPLACE);
- (olNs6&&olShowId<0) ? olShowId=setTimeout("runHook('showObject', FREPLACE, over)", 1) : runHook("showObject", FREPLACE, over);
- o3_allowmove = (o3_sticky || o3_followmouse==0) ? 0 : 1;
- }
-
- runHook("disp", FAFTER);
-
- if (statustext != "") self.status = statustext;
-}
-
-// Creates the actual popup structure
-function createPopup(lyrContent){
- runHook("createPopup", FBEFORE);
-
- if (o3_wrap) {
- var wd,ww,theObj = (olNs4 ? over : over.style);
- theObj.top = theObj.left = ((olIe4&&!olOp) ? 0 : -10000) + (!olNs4 ? 'px' : 0);
- layerWrite(lyrContent);
- wd = (olNs4 ? over.clip.width : over.offsetWidth);
- if (wd > (ww=windowWidth())) {
- lyrContent=lyrContent.replace(/\ /g, ' ');
- o3_width=ww;
- o3_wrap=0;
- }
- }
-
- layerWrite(lyrContent);
-
- // Have to set o3_width for placeLayer() routine if o3_wrap is turned on
- if (o3_wrap) o3_width=(olNs4 ? over.clip.width : over.offsetWidth);
-
- runHook("createPopup", FAFTER, lyrContent);
-
- return true;
-}
-
-// Decides where we want the popup.
-function placeLayer() {
- var placeX, placeY, widthFix = 0;
-
- // HORIZONTAL PLACEMENT, re-arranged to work in Safari
- if (o3_frame.innerWidth) widthFix=18;
- iwidth = windowWidth();
-
- // Horizontal scroll offset
- winoffset=(olIe4) ? eval('o3_frame.'+docRoot+'.scrollLeft') : o3_frame.pageXOffset;
-
- placeX = runHook('horizontalPlacement',FCHAIN,iwidth,winoffset,widthFix);
-
- // VERTICAL PLACEMENT, re-arranged to work in Safari
- if (o3_frame.innerHeight) {
- iheight=o3_frame.innerHeight;
- } else if (eval('o3_frame.'+docRoot)&&eval("typeof o3_frame."+docRoot+".clientHeight=='number'")&&eval('o3_frame.'+docRoot+'.clientHeight')) {
- iheight=eval('o3_frame.'+docRoot+'.clientHeight');
- }
-
- // Vertical scroll offset
- scrolloffset=(olIe4) ? eval('o3_frame.'+docRoot+'.scrollTop') : o3_frame.pageYOffset;
- placeY = runHook('verticalPlacement',FCHAIN,iheight,scrolloffset);
-
- // Actually move the object.
- repositionTo(over, placeX, placeY);
-}
-
-// Moves the layer
-function olMouseMove(e) {
- var e = (e) ? e : event;
-
- if (e.pageX) {
- o3_x = e.pageX;
- o3_y = e.pageY;
- } else if (e.clientX) {
- o3_x = eval('e.clientX+o3_frame.'+docRoot+'.scrollLeft');
- o3_y = eval('e.clientY+o3_frame.'+docRoot+'.scrollTop');
- }
-
- if (o3_allowmove == 1) runHook("placeLayer", FREPLACE);
-
- // MouseOut handler
- if (hoveringSwitch && !olNs4 && runHook("cursorOff", FREPLACE)) {
- (olHideDelay ? hideDelay(olHideDelay) : cClick());
- hoveringSwitch = !hoveringSwitch;
- }
-}
-
-// Fake function for 3.0 users.
-function no_overlib() { return ver3fix; }
-
-// Capture the mouse and chain other scripts.
-function olMouseCapture() {
- capExtent = document;
- var fN, str = '', l, k, f, wMv, sS, mseHandler = olMouseMove;
- var re = /function[ ]*(\w*)\(/;
-
- wMv = (!olIe4 && window.onmousemove);
- if (document.onmousemove || wMv) {
- if (wMv) capExtent = window;
- f = capExtent.onmousemove.toString();
- fN = f.match(re);
- if (fN == null) {
- str = f+'(e); ';
- } else if (fN[1] == 'anonymous' || fN[1] == 'olMouseMove' || (wMv && fN[1] == 'onmousemove')) {
- if (!olOp && wMv) {
- l = f.indexOf('{')+1;
- k = f.lastIndexOf('}');
- sS = f.substring(l,k);
- if ((l = sS.indexOf('(')) != -1) {
- sS = sS.substring(0,l).replace(/^\s+/,'').replace(/\s+$/,'');
- if (eval("typeof " + sS + " == 'undefined'")) window.onmousemove = null;
- else str = sS + '(e);';
- }
- }
- if (!str) {
- olCheckMouseCapture = false;
- return;
- }
- } else {
- if (fN[1]) str = fN[1]+'(e); ';
- else {
- l = f.indexOf('{')+1;
- k = f.lastIndexOf('}');
- str = f.substring(l,k) + '\n';
- }
- }
- str += 'olMouseMove(e); ';
- mseHandler = new Function('e', str);
- }
-
- capExtent.onmousemove = mseHandler;
- if (olNs4) capExtent.captureEvents(Event.MOUSEMOVE);
-}
-
-////////
-// PARSING FUNCTIONS
-////////
-
-// Does the actual command parsing.
-function parseTokens(pf, ar) {
- // What the next argument is expected to be.
- var v, i, mode=-1, par = (pf != 'ol_');
- var fnMark = (par && !ar.length ? 1 : 0);
-
- for (i = 0; i < ar.length; i++) {
- if (mode < 0) {
- // Arg is maintext,unless its a number between pmStart and pmUpper
- // then its a command.
- if (typeof ar[i] == 'number' && ar[i] > pmStart && ar[i] < pmUpper) {
- fnMark = (par ? 1 : 0);
- i--; // backup one so that the next block can parse it
- } else {
- switch(pf) {
- case 'ol_':
- ol_text = ar[i].toString();
- break;
- default:
- o3_text=ar[i].toString();
- }
- }
- mode = 0;
- } else {
- // Note: NS4 doesn't like switch cases with vars.
- if (ar[i] >= pmCount || ar[i]==DONOTHING) { continue; }
- if (ar[i]==INARRAY) { fnMark = 0; eval(pf+'text=ol_texts['+ar[++i]+'].toString()'); continue; }
- if (ar[i]==CAPARRAY) { eval(pf+'cap=ol_caps['+ar[++i]+'].toString()'); continue; }
- if (ar[i]==STICKY) { if (pf!='ol_') eval(pf+'sticky=1'); continue; }
- if (ar[i]==BACKGROUND) { eval(pf+'background="'+ar[++i]+'"'); continue; }
- if (ar[i]==NOCLOSE) { if (pf!='ol_') opt_NOCLOSE(); continue; }
- if (ar[i]==CAPTION) { eval(pf+"cap='"+escSglQuote(ar[++i])+"'"); continue; }
- if (ar[i]==CENTER || ar[i]==LEFT || ar[i]==RIGHT) { eval(pf+'hpos='+ar[i]); if(pf!='ol_') olHautoFlag=1; continue; }
- if (ar[i]==OFFSETX) { eval(pf+'offsetx='+ar[++i]); continue; }
- if (ar[i]==OFFSETY) { eval(pf+'offsety='+ar[++i]); continue; }
- if (ar[i]==FGCOLOR) { eval(pf+'fgcolor="'+ar[++i]+'"'); continue; }
- if (ar[i]==BGCOLOR) { eval(pf+'bgcolor="'+ar[++i]+'"'); continue; }
- if (ar[i]==TEXTCOLOR) { eval(pf+'textcolor="'+ar[++i]+'"'); continue; }
- if (ar[i]==CAPCOLOR) { eval(pf+'capcolor="'+ar[++i]+'"'); continue; }
- if (ar[i]==CLOSECOLOR) { eval(pf+'closecolor="'+ar[++i]+'"'); continue; }
- if (ar[i]==WIDTH) { eval(pf+'width='+ar[++i]); continue; }
- if (ar[i]==BORDER) { eval(pf+'border='+ar[++i]); continue; }
- if (ar[i]==CELLPAD) { i=opt_MULTIPLEARGS(++i,ar,(pf+'cellpad')); continue; }
- if (ar[i]==STATUS) { eval(pf+"status='"+escSglQuote(ar[++i])+"'"); continue; }
- if (ar[i]==AUTOSTATUS) { eval(pf +'autostatus=('+pf+'autostatus == 1) ? 0 : 1'); continue; }
- if (ar[i]==AUTOSTATUSCAP) { eval(pf +'autostatus=('+pf+'autostatus == 2) ? 0 : 2'); continue; }
- if (ar[i]==HEIGHT) { eval(pf+'height='+pf+'aboveheight='+ar[++i]); continue; } // Same param again.
- if (ar[i]==CLOSETEXT) { eval(pf+"close='"+escSglQuote(ar[++i])+"'"); continue; }
- if (ar[i]==SNAPX) { eval(pf+'snapx='+ar[++i]); continue; }
- if (ar[i]==SNAPY) { eval(pf+'snapy='+ar[++i]); continue; }
- if (ar[i]==FIXX) { eval(pf+'fixx='+ar[++i]); continue; }
- if (ar[i]==FIXY) { eval(pf+'fixy='+ar[++i]); continue; }
- if (ar[i]==RELX) { eval(pf+'relx='+ar[++i]); continue; }
- if (ar[i]==RELY) { eval(pf+'rely='+ar[++i]); continue; }
- if (ar[i]==FGBACKGROUND) { eval(pf+'fgbackground="'+ar[++i]+'"'); continue; }
- if (ar[i]==BGBACKGROUND) { eval(pf+'bgbackground="'+ar[++i]+'"'); continue; }
- if (ar[i]==PADX) { eval(pf+'padxl='+ar[++i]); eval(pf+'padxr='+ar[++i]); continue; }
- if (ar[i]==PADY) { eval(pf+'padyt='+ar[++i]); eval(pf+'padyb='+ar[++i]); continue; }
- if (ar[i]==FULLHTML) { if (pf!='ol_') eval(pf+'fullhtml=1'); continue; }
- if (ar[i]==BELOW || ar[i]==ABOVE) { eval(pf+'vpos='+ar[i]); if (pf!='ol_') olVautoFlag=1; continue; }
- if (ar[i]==CAPICON) { eval(pf+'capicon="'+ar[++i]+'"'); continue; }
- if (ar[i]==TEXTFONT) { eval(pf+"textfont='"+escSglQuote(ar[++i])+"'"); continue; }
- if (ar[i]==CAPTIONFONT) { eval(pf+"captionfont='"+escSglQuote(ar[++i])+"'"); continue; }
- if (ar[i]==CLOSEFONT) { eval(pf+"closefont='"+escSglQuote(ar[++i])+"'"); continue; }
- if (ar[i]==TEXTSIZE) { eval(pf+'textsize="'+ar[++i]+'"'); continue; }
- if (ar[i]==CAPTIONSIZE) { eval(pf+'captionsize="'+ar[++i]+'"'); continue; }
- if (ar[i]==CLOSESIZE) { eval(pf+'closesize="'+ar[++i]+'"'); continue; }
- if (ar[i]==TIMEOUT) { eval(pf+'timeout='+ar[++i]); continue; }
- if (ar[i]==FUNCTION) { if (pf=='ol_') { if (typeof ar[i+1]!='number') { v=ar[++i]; ol_function=(typeof v=='function' ? v : null); }} else {fnMark = 0; v = null; if (typeof ar[i+1]!='number') v = ar[++i]; opt_FUNCTION(v); } continue; }
- if (ar[i]==DELAY) { eval(pf+'delay='+ar[++i]); continue; }
- if (ar[i]==HAUTO) { eval(pf+'hauto=('+pf+'hauto == 0) ? 1 : 0'); continue; }
- if (ar[i]==VAUTO) { eval(pf+'vauto=('+pf+'vauto == 0) ? 1 : 0'); continue; }
- if (ar[i]==CLOSECLICK) { eval(pf +'closeclick=('+pf+'closeclick == 0) ? 1 : 0'); continue; }
- if (ar[i]==WRAP) { eval(pf +'wrap=('+pf+'wrap == 0) ? 1 : 0'); continue; }
- if (ar[i]==FOLLOWMOUSE) { eval(pf +'followmouse=('+pf+'followmouse == 1) ? 0 : 1'); continue; }
- if (ar[i]==MOUSEOFF) { eval(pf +'mouseoff=('+pf+'mouseoff==0) ? 1 : 0'); v=ar[i+1]; if (pf != 'ol_' && eval(pf+'mouseoff') && typeof v == 'number' && (v < pmStart || v > pmUpper)) olHideDelay=ar[++i]; continue; }
- if (ar[i]==CLOSETITLE) { eval(pf+"closetitle='"+escSglQuote(ar[++i])+"'"); continue; }
- if (ar[i]==CSSOFF||ar[i]==CSSCLASS) { eval(pf+'css='+ar[i]); continue; }
- if (ar[i]==COMPATMODE) { eval(pf+'compatmode=('+pf+'compatmode==0) ? 1 : 0'); continue; }
- if (ar[i]==FGCLASS) { eval(pf+'fgclass="'+ar[++i]+'"'); continue; }
- if (ar[i]==BGCLASS) { eval(pf+'bgclass="'+ar[++i]+'"'); continue; }
- if (ar[i]==TEXTFONTCLASS) { eval(pf+'textfontclass="'+ar[++i]+'"'); continue; }
- if (ar[i]==CAPTIONFONTCLASS) { eval(pf+'captionfontclass="'+ar[++i]+'"'); continue; }
- if (ar[i]==CLOSEFONTCLASS) { eval(pf+'closefontclass="'+ar[++i]+'"'); continue; }
- i = parseCmdLine(pf, i, ar);
- }
- }
-
- if (fnMark && o3_function) o3_text = o3_function();
-
- if ((pf == 'o3_') && o3_wrap) {
- o3_width = 0;
-
- var tReg=/<.*\n*>/ig;
- if (!tReg.test(o3_text)) o3_text = o3_text.replace(/[ ]+/g, ' ');
- if (!tReg.test(o3_cap))o3_cap = o3_cap.replace(/[ ]+/g, ' ');
- }
- if ((pf == 'o3_') && o3_sticky) {
- if (!o3_close && (o3_frame != ol_frame)) o3_close = ol_close;
- if (o3_mouseoff && (o3_frame == ol_frame)) opt_NOCLOSE(' ');
- }
-}
-
-
-////////
-// LAYER FUNCTIONS
-////////
-
-// Writes to a layer
-function layerWrite(txt) {
- txt += "\n";
- if (olNs4) {
- var lyr = o3_frame.document.layers['overDiv'].document
- lyr.write(txt)
- lyr.close()
- } else if (typeof over.innerHTML != 'undefined') {
- if (olIe5 && isMac) over.innerHTML = '';
- over.innerHTML = txt;
- } else {
- range = o3_frame.document.createRange();
- range.setStartAfter(over);
- domfrag = range.createContextualFragment(txt);
-
- while (over.hasChildNodes()) {
- over.removeChild(over.lastChild);
- }
-
- over.appendChild(domfrag);
- }
-}
-
-// Make an object visible
-function showObject(obj) {
- runHook("showObject", FBEFORE);
-
- var theObj=(olNs4 ? obj : obj.style);
- theObj.visibility = 'visible';
-
- runHook("showObject", FAFTER);
-}
-
-// Hides an object
-function hideObject(obj) {
- runHook("hideObject", FBEFORE);
-
- var theObj=(olNs4 ? obj : obj.style);
- if (olNs6 && olShowId>0) { clearTimeout(olShowId); olShowId=0; }
- theObj.visibility = 'hidden';
- theObj.top = theObj.left = ((olIe4&&!olOp) ? 0 : -10000) + (!olNs4 ? 'px' : 0);
-
- if (o3_timerid > 0) clearTimeout(o3_timerid);
- if (o3_delayid > 0) clearTimeout(o3_delayid);
-
- o3_timerid = 0;
- o3_delayid = 0;
- self.status = "";
-
- if (obj.onmouseout||obj.onmouseover) {
- if (olNs4) obj.releaseEvents(Event.MOUSEOUT || Event.MOUSEOVER);
- obj.onmouseout = obj.onmouseover = null;
- }
-
- runHook("hideObject", FAFTER);
-}
-
-// Move a layer
-function repositionTo(obj, xL, yL) {
- var theObj=(olNs4 ? obj : obj.style);
- theObj.left = xL + (!olNs4 ? 'px' : 0);
- theObj.top = yL + (!olNs4 ? 'px' : 0);
-}
-
-// Check position of cursor relative to overDiv DIVision; mouseOut function
-function cursorOff() {
- var left = parseInt(over.style.left);
- var top = parseInt(over.style.top);
- var right = left + (over.offsetWidth >= parseInt(o3_width) ? over.offsetWidth : parseInt(o3_width));
- var bottom = top + (over.offsetHeight >= o3_aboveheight ? over.offsetHeight : o3_aboveheight);
-
- if (o3_x < left || o3_x > right || o3_y < top || o3_y > bottom) return true;
-
- return false;
-}
-
-
-////////
-// COMMAND FUNCTIONS
-////////
-
-// Calls callme or the default function.
-function opt_FUNCTION(callme) {
- o3_text = (callme ? (typeof callme=='string' ? (/.+\(.*\)/.test(callme) ? eval(callme) : callme) : callme()) : (o3_function ? o3_function() : 'No Function'));
-
- return 0;
-}
-
-// Handle hovering
-function opt_NOCLOSE(unused) {
- if (!unused) o3_close = "";
-
- if (olNs4) {
- over.captureEvents(Event.MOUSEOUT || Event.MOUSEOVER);
- over.onmouseover = function () { if (o3_timerid > 0) { clearTimeout(o3_timerid); o3_timerid = 0; } }
- over.onmouseout = function (e) { if (olHideDelay) hideDelay(olHideDelay); else cClick(e); }
- } else {
- over.onmouseover = function () {hoveringSwitch = true; if (o3_timerid > 0) { clearTimeout(o3_timerid); o3_timerid =0; } }
- }
-
- return 0;
-}
-
-// Function to scan command line arguments for multiples
-function opt_MULTIPLEARGS(i, args, parameter) {
- var k=i, re, pV, str='';
-
- for(k=i; kpmStart) break;
- str += args[k] + ',';
- }
- if (str) str = str.substring(0,--str.length);
-
- k--; // reduce by one so the for loop this is in works correctly
- pV=(olNs4 && /cellpad/i.test(parameter)) ? str.split(',')[0] : str;
- eval(parameter + '="' + pV + '"');
-
- return k;
-}
-
-// Remove in texts when done.
-function nbspCleanup() {
- if (o3_wrap) {
- o3_text = o3_text.replace(/\ /g, ' ');
- o3_cap = o3_cap.replace(/\ /g, ' ');
- }
-}
-
-// Escape embedded single quotes in text strings
-function escSglQuote(str) {
- return str.toString().replace(/'/g,"\\'");
-}
-
-// Onload handler for window onload event
-function OLonLoad_handler(e) {
- var re = /\w+\(.*\)[;\s]+/g, olre = /overlib\(|nd\(|cClick\(/, fn, l, i;
-
- if(!olLoaded) olLoaded=1;
-
- // Remove it for Gecko based browsers
- if(window.removeEventListener && e.eventPhase == 3) window.removeEventListener("load",OLonLoad_handler,false);
- else if(window.detachEvent) { // and for IE and Opera 4.x but execute calls to overlib, nd, or cClick()
- window.detachEvent("onload",OLonLoad_handler);
- var fN = document.body.getAttribute('onload');
- if (fN) {
- fN=fN.toString().match(re);
- if (fN && fN.length) {
- for (i=0; i' : '
') : '';
- else {
- fontStr='o3_'+whichString+'font';
- fontColor='o3_'+((whichString=='caption')? 'cap' : whichString)+'color';
- return (hasDims&&!olNs4) ? (isClose ? '' : '| Taxonomy Summary. Current Level: | |
| View Figure (.pdf) View Legend (.pdf) |
-- |
 |
-|
| View Table (.txt) |
| Total | feces | L_palm | Other | Tongue | |||
| Legend | Taxonomy | count | % | % | % | % | % |
| Unclassified;Other | 2 | 47.5% | 1.1% | 20.0% | 90.9% | 77.8% | |
| k__Bacteria;Other | 2 | 52.0% | 98.9% | 77.8% | 9.1% | 22.2% | |
| k__Bacteria;p__Proteobacteria | 0 | 0.6% | 0.0% | 2.2% | 0.0% | 0.0% | |
| Taxonomy Summary. Current Level: | |
| View Figure (.pdf) View Legend (.pdf) |
-- |
 |
-|
| View Table (.txt) |
| Total | feces | L_palm | Other | Tongue | |||
| Legend | Taxonomy | count | % | % | % | % | % |
| Unclassified;Other;Other | 2 | 47.5% | 1.1% | 20.0% | 90.9% | 77.8% | |
| k__Bacteria;Other;Other | 2 | 52.0% | 98.9% | 77.8% | 9.1% | 22.2% | |
| k__Bacteria;p__Proteobacteria;Other | 0 | 0.6% | 0.0% | 2.2% | 0.0% | 0.0% | |
| Taxonomy Summary. Current Level: | |
| View Figure (.pdf) View Legend (.pdf) |
-- |
 |
-|
| View Table (.txt) |
| Total | feces | L_palm | Other | Tongue | |||
| Legend | Taxonomy | count | % | % | % | % | % |
| Unclassified;Other;Other;Other | 2 | 47.5% | 1.1% | 20.0% | 90.9% | 77.8% | |
| k__Bacteria;Other;Other;Other | 2 | 52.0% | 98.9% | 77.8% | 9.1% | 22.2% | |
| k__Bacteria;p__Proteobacteria;Other;Other | 0 | 0.6% | 0.0% | 2.2% | 0.0% | 0.0% | |
| Taxonomy Summary. Current Level: | |
| View Figure (.pdf) View Legend (.pdf) |
-- |
 |
-|
| View Table (.txt) |
| Total | feces | L_palm | Other | Tongue | |||
| Legend | Taxonomy | count | % | % | % | % | % |
| Unclassified;Other;Other;Other;Other | 2 | 47.5% | 1.1% | 20.0% | 90.9% | 77.8% | |
| k__Bacteria;Other;Other;Other;Other | 2 | 52.0% | 98.9% | 77.8% | 9.1% | 22.2% | |
| k__Bacteria;p__Proteobacteria;Other;Other;Other | 0 | 0.6% | 0.0% | 2.2% | 0.0% | 0.0% | |
| Taxonomy Summary. Current Level: | |
| View Figure (.pdf) View Legend (.pdf) |
-- |
 |
-|
| View Table (.txt) |
| Total | feces | L_palm | Other | Tongue | |||
| Legend | Taxonomy | count | % | % | % | % | % |
| Unclassified;Other;Other;Other;Other;Other | 2 | 47.5% | 1.1% | 20.0% | 90.9% | 77.8% | |
| k__Bacteria;Other;Other;Other;Other;Other | 2 | 52.0% | 98.9% | 77.8% | 9.1% | 22.2% | |
| k__Bacteria;p__Proteobacteria;Other;Other;Other;Other | 0 | 0.6% | 0.0% | 2.2% | 0.0% | 0.0% | |
| Taxonomy Summary. Current Level: | |
| View Figure (.pdf) View Legend (.pdf) |
-- |
 |
-|
| View Table (.txt) |
| Total | feces | L_palm | Other | Tongue | |||
| Legend | Taxonomy | count | % | % | % | % | % |
| Unclassified;Other | 2 | 47.5% | 1.1% | 20.0% | 90.9% | 77.8% | |
| k__Bacteria;Other | 2 | 52.0% | 98.9% | 77.8% | 9.1% | 22.2% | |
| k__Bacteria;p__Proteobacteria | 0 | 0.6% | 0.0% | 2.2% | 0.0% | 0.0% | |
| Taxonomy Summary. Current Level: | |
| View Figure (.pdf) View Legend (.pdf) |
-- |
 |
-|
| View Table (.txt) |
| Total | feces | L_palm | Other | Tongue | |||
| Legend | Taxonomy | count | % | % | % | % | % |
| Unclassified;Other;Other | 2 | 47.5% | 1.1% | 20.0% | 90.9% | 77.8% | |
| k__Bacteria;Other;Other | 2 | 52.0% | 98.9% | 77.8% | 9.1% | 22.2% | |
| k__Bacteria;p__Proteobacteria;Other | 0 | 0.6% | 0.0% | 2.2% | 0.0% | 0.0% | |
| Taxonomy Summary. Current Level: | |
| View Figure (.pdf) View Legend (.pdf) |
-- |
 |
-|
| View Table (.txt) |
| Total | feces | L_palm | Other | Tongue | |||
| Legend | Taxonomy | count | % | % | % | % | % |
| Unclassified;Other;Other;Other | 2 | 47.5% | 1.1% | 20.0% | 90.9% | 77.8% | |
| k__Bacteria;Other;Other;Other | 2 | 52.0% | 98.9% | 77.8% | 9.1% | 22.2% | |
| k__Bacteria;p__Proteobacteria;Other;Other | 0 | 0.6% | 0.0% | 2.2% | 0.0% | 0.0% | |
| Taxonomy Summary. Current Level: | |
| View Figure (.pdf) View Legend (.pdf) |
-- |
 |
-|
| View Table (.txt) |
| Total | feces | L_palm | Other | Tongue | |||
| Legend | Taxonomy | count | % | % | % | % | % |
| Unclassified;Other;Other;Other;Other | 2 | 47.5% | 1.1% | 20.0% | 90.9% | 77.8% | |
| k__Bacteria;Other;Other;Other;Other | 2 | 52.0% | 98.9% | 77.8% | 9.1% | 22.2% | |
| k__Bacteria;p__Proteobacteria;Other;Other;Other | 0 | 0.6% | 0.0% | 2.2% | 0.0% | 0.0% | |
| Taxonomy Summary. Current Level: | |
| View Figure (.pdf) View Legend (.pdf) |
-- |
 |
-|
| View Table (.txt) |
| Total | feces | L_palm | Other | Tongue | |||
| Legend | Taxonomy | count | % | % | % | % | % |
| Unclassified;Other;Other;Other;Other;Other | 2 | 47.5% | 1.1% | 20.0% | 90.9% | 77.8% | |
| k__Bacteria;Other;Other;Other;Other;Other | 2 | 52.0% | 98.9% | 77.8% | 9.1% | 22.2% | |
| k__Bacteria;p__Proteobacteria;Other;Other;Other;Other | 0 | 0.6% | 0.0% | 2.2% | 0.0% | 0.0% | |
|
|
| '+(o3_textfontclass ? '' : wrapStr(0,o3_textsize,'text'))+text+(o3_textfontclass ? '' : wrapStr(1,o3_textsize))+' | ||
') : '';
- }
-}
-
-// Quotes Multi word font names; needed for CSS Standards adherence in font-family
-function quoteMultiNameFonts(theFont) {
- var v, pM=theFont.split(',');
- for (var i=0; i 0) clearTimeout(o3_timerid);
-
- o3_timerid=setTimeout("cClick()",(o3_timeout=time));
- }
-}
-
-// Was originally in the placeLayer() routine; separated out for future ease
-function horizontalPlacement(browserWidth, horizontalScrollAmount, widthFix) {
- var placeX, iwidth=browserWidth, winoffset=horizontalScrollAmount;
- var parsedWidth = parseInt(o3_width);
-
- if (o3_fixx > -1 || o3_relx != null) {
- // Fixed position
- placeX=(o3_relx != null ? ( o3_relx < 0 ? winoffset +o3_relx+ iwidth - parsedWidth - widthFix : winoffset+o3_relx) : o3_fixx);
- } else {
- // If HAUTO, decide what to use.
- if (o3_hauto == 1) {
- if ((o3_x - winoffset) > (iwidth / 2)) {
- o3_hpos = LEFT;
- } else {
- o3_hpos = RIGHT;
- }
- }
-
- // From mouse
- if (o3_hpos == CENTER) { // Center
- placeX = o3_x+o3_offsetx-(parsedWidth/2);
-
- if (placeX < winoffset) placeX = winoffset;
- }
-
- if (o3_hpos == RIGHT) { // Right
- placeX = o3_x+o3_offsetx;
-
- if ((placeX+parsedWidth) > (winoffset+iwidth - widthFix)) {
- placeX = iwidth+winoffset - parsedWidth - widthFix;
- if (placeX < 0) placeX = 0;
- }
- }
- if (o3_hpos == LEFT) { // Left
- placeX = o3_x-o3_offsetx-parsedWidth;
- if (placeX < winoffset) placeX = winoffset;
- }
-
- // Snapping!
- if (o3_snapx > 1) {
- var snapping = placeX % o3_snapx;
-
- if (o3_hpos == LEFT) {
- placeX = placeX - (o3_snapx+snapping);
- } else {
- // CENTER and RIGHT
- placeX = placeX+(o3_snapx - snapping);
- }
-
- if (placeX < winoffset) placeX = winoffset;
- }
- }
-
- return placeX;
-}
-
-// was originally in the placeLayer() routine; separated out for future ease
-function verticalPlacement(browserHeight,verticalScrollAmount) {
- var placeY, iheight=browserHeight, scrolloffset=verticalScrollAmount;
- var parsedHeight=(o3_aboveheight ? parseInt(o3_aboveheight) : (olNs4 ? over.clip.height : over.offsetHeight));
-
- if (o3_fixy > -1 || o3_rely != null) {
- // Fixed position
- placeY=(o3_rely != null ? (o3_rely < 0 ? scrolloffset+o3_rely+iheight - parsedHeight : scrolloffset+o3_rely) : o3_fixy);
- } else {
- // If VAUTO, decide what to use.
- if (o3_vauto == 1) {
- if ((o3_y - scrolloffset) > (iheight / 2) && o3_vpos == BELOW && (o3_y + parsedHeight + o3_offsety - (scrolloffset + iheight) > 0)) {
- o3_vpos = ABOVE;
- } else if (o3_vpos == ABOVE && (o3_y - (parsedHeight + o3_offsety) - scrolloffset < 0)) {
- o3_vpos = BELOW;
- }
- }
-
- // From mouse
- if (o3_vpos == ABOVE) {
- if (o3_aboveheight == 0) o3_aboveheight = parsedHeight;
-
- placeY = o3_y - (o3_aboveheight+o3_offsety);
- if (placeY < scrolloffset) placeY = scrolloffset;
- } else {
- // BELOW
- placeY = o3_y+o3_offsety;
- }
-
- // Snapping!
- if (o3_snapy > 1) {
- var snapping = placeY % o3_snapy;
-
- if (o3_aboveheight > 0 && o3_vpos == ABOVE) {
- placeY = placeY - (o3_snapy+snapping);
- } else {
- placeY = placeY+(o3_snapy - snapping);
- }
-
- if (placeY < scrolloffset) placeY = scrolloffset;
- }
- }
-
- return placeY;
-}
-
-// checks positioning flags
-function checkPositionFlags() {
- if (olHautoFlag) olHautoFlag = o3_hauto=0;
- if (olVautoFlag) olVautoFlag = o3_vauto=0;
- return true;
-}
-
-// get Browser window width
-function windowWidth() {
- var w;
- if (o3_frame.innerWidth) w=o3_frame.innerWidth;
- else if (eval('o3_frame.'+docRoot)&&eval("typeof o3_frame."+docRoot+".clientWidth=='number'")&&eval('o3_frame.'+docRoot+'.clientWidth'))
- w=eval('o3_frame.'+docRoot+'.clientWidth');
- return w;
-}
-
-// create the div container for popup content if it doesn't exist
-function createDivContainer(id,frm,zValue) {
- id = (id || 'overDiv'), frm = (frm || o3_frame), zValue = (zValue || 1000);
- var objRef, divContainer = layerReference(id);
-
- if (divContainer == null) {
- if (olNs4) {
- divContainer = frm.document.layers[id] = new Layer(window.innerWidth, frm);
- objRef = divContainer;
- } else {
- var body = (olIe4 ? frm.document.all.tags('BODY')[0] : frm.document.getElementsByTagName("BODY")[0]);
- if (olIe4&&!document.getElementById) {
- body.insertAdjacentHTML("beforeEnd",'');
- divContainer=layerReference(id);
- } else {
- divContainer = frm.document.createElement("DIV");
- divContainer.id = id;
- body.appendChild(divContainer);
- }
- objRef = divContainer.style;
- }
-
- objRef.position = 'absolute';
- objRef.visibility = 'hidden';
- objRef.zIndex = zValue;
- if (olIe4&&!olOp) objRef.left = objRef.top = '0px';
- else objRef.left = objRef.top = -10000 + (!olNs4 ? 'px' : 0);
- }
-
- return divContainer;
-}
-
-// get reference to a layer with ID=id
-function layerReference(id) {
- return (olNs4 ? o3_frame.document.layers[id] : (document.all ? o3_frame.document.all[id] : o3_frame.document.getElementById(id)));
-}
-////////
-// UTILITY FUNCTIONS
-////////
-
-// Checks if something is a function.
-function isFunction(fnRef) {
- var rtn = true;
-
- if (typeof fnRef == 'object') {
- for (var i = 0; i < fnRef.length; i++) {
- if (typeof fnRef[i]=='function') continue;
- rtn = false;
- break;
- }
- } else if (typeof fnRef != 'function') {
- rtn = false;
- }
-
- return rtn;
-}
-
-// Converts an array into an argument string for use in eval.
-function argToString(array, strtInd, argName) {
- var jS = strtInd, aS = '', ar = array;
- argName=(argName ? argName : 'ar');
-
- if (ar.length > jS) {
- for (var k = jS; k < ar.length; k++) aS += argName+'['+k+'], ';
- aS = aS.substring(0, aS.length-2);
- }
-
- return aS;
-}
-
-// Places a hook in the correct position in a hook point.
-function reOrder(hookPt, fnRef, order) {
- var newPt = new Array(), match, i, j;
-
- if (!order || typeof order == 'undefined' || typeof order == 'number') return hookPt;
-
- if (typeof order=='function') {
- if (typeof fnRef=='object') {
- newPt = newPt.concat(fnRef);
- } else {
- newPt[newPt.length++]=fnRef;
- }
-
- for (i = 0; i < hookPt.length; i++) {
- match = false;
- if (typeof fnRef == 'function' && hookPt[i] == fnRef) {
- continue;
- } else {
- for(j = 0; j < fnRef.length; j++) if (hookPt[i] == fnRef[j]) {
- match = true;
- break;
- }
- }
- if (!match) newPt[newPt.length++] = hookPt[i];
- }
-
- newPt[newPt.length++] = order;
-
- } else if (typeof order == 'object') {
- if (typeof fnRef == 'object') {
- newPt = newPt.concat(fnRef);
- } else {
- newPt[newPt.length++] = fnRef;
- }
-
- for (j = 0; j < hookPt.length; j++) {
- match = false;
- if (typeof fnRef == 'function' && hookPt[j] == fnRef) {
- continue;
- } else {
- for (i = 0; i < fnRef.length; i++) if (hookPt[j] == fnRef[i]) {
- match = true;
- break;
- }
- }
- if (!match) newPt[newPt.length++]=hookPt[j];
- }
-
- for (i = 0; i < newPt.length; i++) hookPt[i] = newPt[i];
- newPt.length = 0;
-
- for (j = 0; j < hookPt.length; j++) {
- match = false;
- for (i = 0; i < order.length; i++) {
- if (hookPt[j] == order[i]) {
- match = true;
- break;
- }
- }
- if (!match) newPt[newPt.length++] = hookPt[j];
- }
- newPt = newPt.concat(order);
- }
-
- hookPt = newPt;
-
- return hookPt;
-}
-
-////////
-// PLUGIN ACTIVATION FUNCTIONS
-////////
-
-// Runs plugin functions to set runtime variables.
-function setRunTimeVariables(){
- if (typeof runTime != 'undefined' && runTime.length) {
- for (var k = 0; k < runTime.length; k++) {
- runTime[k]();
- }
- }
-}
-
-// Runs plugin functions to parse commands.
-function parseCmdLine(pf, i, args) {
- if (typeof cmdLine != 'undefined' && cmdLine.length) {
- for (var k = 0; k < cmdLine.length; k++) {
- var j = cmdLine[k](pf, i, args);
- if (j >- 1) {
- i = j;
- break;
- }
- }
- }
-
- return i;
-}
-
-// Runs plugin functions to do things after parse.
-function postParseChecks(pf,args){
- if (typeof postParse != 'undefined' && postParse.length) {
- for (var k = 0; k < postParse.length; k++) {
- if (postParse[k](pf,args)) continue;
- return false; // end now since have an error
- }
- }
- return true;
-}
-
-
-////////
-// PLUGIN REGISTRATION FUNCTIONS
-////////
-
-// Registers commands and creates constants.
-function registerCommands(cmdStr) {
- if (typeof cmdStr!='string') return;
-
- var pM = cmdStr.split(',');
- pms = pms.concat(pM);
-
- for (var i = 0; i< pM.length; i++) {
- eval(pM[i].toUpperCase()+'='+pmCount++);
- }
-}
-
-// Registers no-parameter commands
-function registerNoParameterCommands(cmdStr) {
- if (!cmdStr && typeof cmdStr != 'string') return;
- pmt=(!pmt) ? cmdStr : pmt + ',' + cmdStr;
-}
-
-// Register a function to hook at a certain point.
-function registerHook(fnHookTo, fnRef, hookType, optPm) {
- var hookPt, last = typeof optPm;
-
- if (fnHookTo == 'plgIn'||fnHookTo == 'postParse') return;
- if (typeof hookPts[fnHookTo] == 'undefined') hookPts[fnHookTo] = new FunctionReference();
-
- hookPt = hookPts[fnHookTo];
-
- if (hookType != null) {
- if (hookType == FREPLACE) {
- hookPt.ovload = fnRef; // replace normal overlib routine
- if (fnHookTo.indexOf('ol_content_') > -1) hookPt.alt[pms[CSSOFF-1-pmStart]]=fnRef;
-
- } else if (hookType == FBEFORE || hookType == FAFTER) {
- var hookPt=(hookType == 1 ? hookPt.before : hookPt.after);
-
- if (typeof fnRef == 'object') {
- hookPt = hookPt.concat(fnRef);
- } else {
- hookPt[hookPt.length++] = fnRef;
- }
-
- if (optPm) hookPt = reOrder(hookPt, fnRef, optPm);
-
- } else if (hookType == FALTERNATE) {
- if (last=='number') hookPt.alt[pms[optPm-1-pmStart]] = fnRef;
- } else if (hookType == FCHAIN) {
- hookPt = hookPt.chain;
- if (typeof fnRef=='object') hookPt=hookPt.concat(fnRef); // add other functions
- else hookPt[hookPt.length++]=fnRef;
- }
-
- return;
- }
-}
-
-// Register a function that will set runtime variables.
-function registerRunTimeFunction(fn) {
- if (isFunction(fn)) {
- if (typeof fn == 'object') {
- runTime = runTime.concat(fn);
- } else {
- runTime[runTime.length++] = fn;
- }
- }
-}
-
-// Register a function that will handle command parsing.
-function registerCmdLineFunction(fn){
- if (isFunction(fn)) {
- if (typeof fn == 'object') {
- cmdLine = cmdLine.concat(fn);
- } else {
- cmdLine[cmdLine.length++] = fn;
- }
- }
-}
-
-// Register a function that does things after command parsing.
-function registerPostParseFunction(fn){
- if (isFunction(fn)) {
- if (typeof fn == 'object') {
- postParse = postParse.concat(fn);
- } else {
- postParse[postParse.length++] = fn;
- }
- }
-}
-
-////////
-// PLUGIN REGISTRATION FUNCTIONS
-////////
-
-// Runs any hooks registered.
-function runHook(fnHookTo, hookType) {
- var l = hookPts[fnHookTo], k, rtnVal = null, optPm, arS, ar = runHook.arguments;
-
- if (hookType == FREPLACE) {
- arS = argToString(ar, 2);
-
- if (typeof l == 'undefined' || !(l = l.ovload)) rtnVal = eval(fnHookTo+'('+arS+')');
- else rtnVal = eval('l('+arS+')');
-
- } else if (hookType == FBEFORE || hookType == FAFTER) {
- if (typeof l != 'undefined') {
- l=(hookType == 1 ? l.before : l.after);
-
- if (l.length) {
- arS = argToString(ar, 2);
- for (var k = 0; k < l.length; k++) eval('l[k]('+arS+')');
- }
- }
- } else if (hookType == FALTERNATE) {
- optPm = ar[2];
- arS = argToString(ar, 3);
-
- if (typeof l == 'undefined' || (l = l.alt[pms[optPm-1-pmStart]]) == 'undefined') {
- rtnVal = eval(fnHookTo+'('+arS+')');
- } else {
- rtnVal = eval('l('+arS+')');
- }
- } else if (hookType == FCHAIN) {
- arS=argToString(ar,2);
- l=l.chain;
-
- for (k=l.length; k > 0; k--) if((rtnVal=eval('l[k-1]('+arS+')'))!=void(0)) break;
- }
-
- return rtnVal;
-}
-
-////////
-// OBJECT CONSTRUCTORS
-////////
-
-// Object for handling hooks.
-function FunctionReference() {
- this.ovload = null;
- this.before = new Array();
- this.after = new Array();
- this.alt = new Array();
- this.chain = new Array();
-}
-
-// Object for simple access to the overLIB version used.
-// Examples: simpleversion:351 major:3 minor:5 revision:1
-function Info(version, prerelease) {
- this.version = version;
- this.prerelease = prerelease;
-
- this.simpleversion = Math.round(this.version*100);
- this.major = parseInt(this.simpleversion / 100);
- this.minor = parseInt(this.simpleversion / 10) - this.major * 10;
- this.revision = parseInt(this.simpleversion) - this.major * 100 - this.minor * 10;
- this.meets = meets;
-}
-
-// checks for Core Version required
-function meets(reqdVersion) {
- return (!reqdVersion) ? false : this.simpleversion >= Math.round(100*parseFloat(reqdVersion));
-}
-
-
-////////
-// STANDARD REGISTRATIONS
-////////
-registerHook("ol_content_simple", ol_content_simple, FALTERNATE, CSSOFF);
-registerHook("ol_content_caption", ol_content_caption, FALTERNATE, CSSOFF);
-registerHook("ol_content_background", ol_content_background, FALTERNATE, CSSOFF);
-registerHook("ol_content_simple", ol_content_simple, FALTERNATE, CSSCLASS);
-registerHook("ol_content_caption", ol_content_caption, FALTERNATE, CSSCLASS);
-registerHook("ol_content_background", ol_content_background, FALTERNATE, CSSCLASS);
-registerPostParseFunction(checkPositionFlags);
-registerHook("hideObject", nbspCleanup, FAFTER);
-registerHook("horizontalPlacement", horizontalPlacement, FCHAIN);
-registerHook("verticalPlacement", verticalPlacement, FCHAIN);
-if (olNs4||(olIe5&&isMac)||olKq) olLoaded=1;
-registerNoParameterCommands('sticky,autostatus,autostatuscap,fullhtml,hauto,vauto,closeclick,wrap,followmouse,mouseoff,compatmode');
-///////
-// ESTABLISH MOUSECAPTURING
-///////
-
-// Capture events, alt. diffuses the overlib function.
-var olCheckMouseCapture=true;
-if ((olNs4 || olNs6 || olIe4)) {
- olMouseCapture();
-} else {
- overlib = no_overlib;
- nd = no_overlib;
- ver3fix = true;
-}
diff --git a/core_diversity_analyses/core_output/taxa_plots_SampleType/taxa_summary_plots/raw_data/SampleType_otu_table_sorted_L2.txt b/core_diversity_analyses/core_output/taxa_plots_SampleType/taxa_summary_plots/raw_data/SampleType_otu_table_sorted_L2.txt
deleted file mode 100644
index 29db02f..0000000
--- a/core_diversity_analyses/core_output/taxa_plots_SampleType/taxa_summary_plots/raw_data/SampleType_otu_table_sorted_L2.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-Taxon feces L_palm Other Tongue
-Unclassified;Other 0.0113636363636 0.2 0.909090909091 0.777777777778
-k__Bacteria;Other 0.988636363636 0.777777777778 0.0909090909091 0.222222222222
-k__Bacteria;p__Proteobacteria 0.0 0.0222222222222 0.0 0.0
diff --git a/core_diversity_analyses/core_output/taxa_plots_SampleType/taxa_summary_plots/raw_data/SampleType_otu_table_sorted_L3.txt b/core_diversity_analyses/core_output/taxa_plots_SampleType/taxa_summary_plots/raw_data/SampleType_otu_table_sorted_L3.txt
deleted file mode 100644
index 764b73c..0000000
--- a/core_diversity_analyses/core_output/taxa_plots_SampleType/taxa_summary_plots/raw_data/SampleType_otu_table_sorted_L3.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-Taxon feces L_palm Other Tongue
-Unclassified;Other;Other 0.0113636363636 0.2 0.909090909091 0.777777777778
-k__Bacteria;Other;Other 0.988636363636 0.777777777778 0.0909090909091 0.222222222222
-k__Bacteria;p__Proteobacteria;Other 0.0 0.0222222222222 0.0 0.0
diff --git a/core_diversity_analyses/core_output/taxa_plots_SampleType/taxa_summary_plots/raw_data/SampleType_otu_table_sorted_L4.txt b/core_diversity_analyses/core_output/taxa_plots_SampleType/taxa_summary_plots/raw_data/SampleType_otu_table_sorted_L4.txt
deleted file mode 100644
index 9517200..0000000
--- a/core_diversity_analyses/core_output/taxa_plots_SampleType/taxa_summary_plots/raw_data/SampleType_otu_table_sorted_L4.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-Taxon feces L_palm Other Tongue
-Unclassified;Other;Other;Other 0.0113636363636 0.2 0.909090909091 0.777777777778
-k__Bacteria;Other;Other;Other 0.988636363636 0.777777777778 0.0909090909091 0.222222222222
-k__Bacteria;p__Proteobacteria;Other;Other 0.0 0.0222222222222 0.0 0.0
diff --git a/core_diversity_analyses/core_output/taxa_plots_SampleType/taxa_summary_plots/raw_data/SampleType_otu_table_sorted_L5.txt b/core_diversity_analyses/core_output/taxa_plots_SampleType/taxa_summary_plots/raw_data/SampleType_otu_table_sorted_L5.txt
deleted file mode 100644
index 90110b6..0000000
--- a/core_diversity_analyses/core_output/taxa_plots_SampleType/taxa_summary_plots/raw_data/SampleType_otu_table_sorted_L5.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-Taxon feces L_palm Other Tongue
-Unclassified;Other;Other;Other;Other 0.0113636363636 0.2 0.909090909091 0.777777777778
-k__Bacteria;Other;Other;Other;Other 0.988636363636 0.777777777778 0.0909090909091 0.222222222222
-k__Bacteria;p__Proteobacteria;Other;Other;Other 0.0 0.0222222222222 0.0 0.0
diff --git a/core_diversity_analyses/core_output/taxa_plots_SampleType/taxa_summary_plots/raw_data/SampleType_otu_table_sorted_L6.txt b/core_diversity_analyses/core_output/taxa_plots_SampleType/taxa_summary_plots/raw_data/SampleType_otu_table_sorted_L6.txt
deleted file mode 100644
index 1ee8e6c..0000000
--- a/core_diversity_analyses/core_output/taxa_plots_SampleType/taxa_summary_plots/raw_data/SampleType_otu_table_sorted_L6.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-Taxon feces L_palm Other Tongue
-Unclassified;Other;Other;Other;Other;Other 0.0113636363636 0.2 0.909090909091 0.777777777778
-k__Bacteria;Other;Other;Other;Other;Other 0.988636363636 0.777777777778 0.0909090909091 0.222222222222
-k__Bacteria;p__Proteobacteria;Other;Other;Other;Other 0.0 0.0222222222222 0.0 0.0
diff --git a/core_diversity_analyses/core_output/taxa_plots_day/day_otu_table.biom b/core_diversity_analyses/core_output/taxa_plots_day/day_otu_table.biom
deleted file mode 100644
index 58911a9..0000000
--- a/core_diversity_analyses/core_output/taxa_plots_day/day_otu_table.biom
+++ /dev/null
@@ -1 +0,0 @@
-{"id": "None","format": "Biological Observation Matrix 1.0.0","format_url": "http://biom-format.org","type": "OTU table","generated_by": "QIIME 1.6.0-dev","date": "2013-02-09T19:02:22.890620","matrix_type": "sparse","matrix_element_type": "float","shape": [14, 3],"data": [[0,1,22.0],[0,2,60.0],[1,1,1.0],[2,0,1.0],[2,1,1.0],[2,2,1.0],[3,0,1.0],[4,1,1.0],[5,1,20.0],[6,1,1.0],[7,0,1.0],[7,1,1.0],[8,0,2.0],[8,1,4.0],[9,1,2.0],[10,0,1.0],[11,0,21.0],[11,1,13.0],[12,0,19.0],[12,1,18.0],[13,1,4.0],[13,2,5.0]],"rows": [{"id": "295053", "metadata": {"taxonomy": ["k__Bacteria"]}},{"id": "42684", "metadata": {"taxonomy": ["k__Bacteria", "p__Proteobacteria"]}},{"id": "None11", "metadata": {"taxonomy": ["Unclassified"]}},{"id": "None10", "metadata": {"taxonomy": ["Unclassified"]}},{"id": "None7", "metadata": {"taxonomy": ["Unclassified"]}},{"id": "None6", "metadata": {"taxonomy": ["Unclassified"]}},{"id": "None5", "metadata": {"taxonomy": ["k__Bacteria"]}},{"id": "None4", "metadata": {"taxonomy": ["Unclassified"]}},{"id": "None3", "metadata": {"taxonomy": ["k__Bacteria"]}},{"id": "None2", "metadata": {"taxonomy": ["k__Bacteria"]}},{"id": "None1", "metadata": {"taxonomy": ["Unclassified"]}},{"id": "879972", "metadata": {"taxonomy": ["k__Bacteria"]}},{"id": "None9", "metadata": {"taxonomy": ["Unclassified"]}},{"id": "None8", "metadata": {"taxonomy": ["k__Bacteria"]}}],"columns": [{"id": "21", "metadata": {"p1": {"days_since_epoch": "14173", "Description": "palm1, contains one randomly generated sequence", "SampleType": "L_palm", "BarcodeSequence": "AACGCACGCTAG", "month": "10", "LinkerPrimerSequence": "GTGCCAGCMGCCGCGGTAA", "year": "2008", "day": "21", "subject": "1"}, "t1": {"days_since_epoch": "14173", "Description": "tongue1, contains one randomly generated sequence", "SampleType": "Tongue", "BarcodeSequence": "AGTGAGAGAAGC", "month": "10", "LinkerPrimerSequence": "GTGCCAGCMGCCGCGGTAA", "year": "2008", "day": "21", "subject": "1"}}},{"id": "22", "metadata": {"p2": {"days_since_epoch": "14174", "Description": "palm2", "SampleType": "L_palm", "BarcodeSequence": "ACACTGTTCATG", "month": "10", "LinkerPrimerSequence": "GTGCCAGCMGCCGCGGTAA", "year": "2008", "day": "22", "subject": "1"}, "f1": {"days_since_epoch": "14174", "Description": "fecal1", "SampleType": "feces", "BarcodeSequence": "ACACTGTTCATG", "month": "10", "LinkerPrimerSequence": "GTGCCAGCMGCCGCGGTAA", "year": "2008", "day": "22", "subject": "1"}, "t2": {"days_since_epoch": "14174", "Description": "tongue2", "SampleType": "Tongue", "BarcodeSequence": "ATACTATTGCGC", "month": "10", "LinkerPrimerSequence": "GTGCCAGCMGCCGCGGTAA", "year": "2008", "day": "22", "subject": "1"}, "not16S.1": {"days_since_epoch": "14174", "Description": "randomly generated sequence plus some variants, these should not map to 16S", "SampleType": "Other", "BarcodeSequence": "ATACTATTGCGC", "month": "10", "LinkerPrimerSequence": "GTGCCAGCMGCCGCGGTAA", "year": "2008", "day": "22", "subject": "1"}}},{"id": "23", "metadata": {"f2": {"days_since_epoch": "14175", "Description": "fecal2", "SampleType": "feces", "BarcodeSequence": "ACCAGACGATGC", "month": "10", "LinkerPrimerSequence": "GTGCCAGCMGCCGCGGTAA", "year": "2008", "day": "23", "subject": "1"}, "f3": {"days_since_epoch": "14175", "Description": "identical sequences to fecal2", "SampleType": "feces", "BarcodeSequence": "ACCAGACGATGC", "month": "10", "LinkerPrimerSequence": "GTGCCAGCMGCCGCGGTAA", "year": "2008", "day": "23", "subject": "1"}, "f4": {"days_since_epoch": "14175", "Description": "all sequences identical, map to GG 295053 at 97 percent id", "SampleType": "feces", "BarcodeSequence": "ACCAGACGATGC", "month": "10", "LinkerPrimerSequence": "GTGCCAGCMGCCGCGGTAA", "year": "2008", "day": "23", "subject": "1"}}}]}
\ No newline at end of file
diff --git a/core_diversity_analyses/core_output/taxa_plots_day/day_otu_table_sorted.biom b/core_diversity_analyses/core_output/taxa_plots_day/day_otu_table_sorted.biom
deleted file mode 100644
index 97ec80f..0000000
--- a/core_diversity_analyses/core_output/taxa_plots_day/day_otu_table_sorted.biom
+++ /dev/null
@@ -1 +0,0 @@
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\ No newline at end of file
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diff --git a/core_diversity_analyses/core_output/taxa_plots_day/day_otu_table_sorted_L3.txt b/core_diversity_analyses/core_output/taxa_plots_day/day_otu_table_sorted_L3.txt
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diff --git a/core_diversity_analyses/core_output/taxa_plots_day/day_otu_table_sorted_L4.txt b/core_diversity_analyses/core_output/taxa_plots_day/day_otu_table_sorted_L4.txt
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diff --git a/core_diversity_analyses/core_output/taxa_plots_day/day_otu_table_sorted_L5.txt b/core_diversity_analyses/core_output/taxa_plots_day/day_otu_table_sorted_L5.txt
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diff --git a/core_diversity_analyses/core_output/taxa_plots_day/day_otu_table_sorted_L6.txt b/core_diversity_analyses/core_output/taxa_plots_day/day_otu_table_sorted_L6.txt
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--- a/core_diversity_analyses/core_output/taxa_plots_day/day_otu_table_sorted_L6.txt
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- if (olCheckMouseCapture) olMouseCapture();
- if (over) {
- over = (typeof over.id != 'string') ? o3_frame.document.all['overDiv'] : over;
- cClick();
- }
-
- // Load defaults to runtime.
- olHideDelay=0;
- o3_text=ol_text;
- o3_cap=ol_cap;
- o3_sticky=ol_sticky;
- o3_background=ol_background;
- o3_close=ol_close;
- o3_hpos=ol_hpos;
- o3_offsetx=ol_offsetx;
- o3_offsety=ol_offsety;
- o3_fgcolor=ol_fgcolor;
- o3_bgcolor=ol_bgcolor;
- o3_textcolor=ol_textcolor;
- o3_capcolor=ol_capcolor;
- o3_closecolor=ol_closecolor;
- o3_width=ol_width;
- o3_border=ol_border;
- o3_cellpad=ol_cellpad;
- o3_status=ol_status;
- o3_autostatus=ol_autostatus;
- o3_height=ol_height;
- o3_snapx=ol_snapx;
- o3_snapy=ol_snapy;
- o3_fixx=ol_fixx;
- o3_fixy=ol_fixy;
- o3_relx=ol_relx;
- o3_rely=ol_rely;
- o3_fgbackground=ol_fgbackground;
- o3_bgbackground=ol_bgbackground;
- o3_padxl=ol_padxl;
- o3_padxr=ol_padxr;
- o3_padyt=ol_padyt;
- o3_padyb=ol_padyb;
- o3_fullhtml=ol_fullhtml;
- o3_vpos=ol_vpos;
- o3_aboveheight=ol_aboveheight;
- o3_capicon=ol_capicon;
- o3_textfont=ol_textfont;
- o3_captionfont=ol_captionfont;
- o3_closefont=ol_closefont;
- o3_textsize=ol_textsize;
- o3_captionsize=ol_captionsize;
- o3_closesize=ol_closesize;
- o3_timeout=ol_timeout;
- o3_function=ol_function;
- o3_delay=ol_delay;
- o3_hauto=ol_hauto;
- o3_vauto=ol_vauto;
- o3_closeclick=ol_closeclick;
- o3_wrap=ol_wrap;
- o3_followmouse=ol_followmouse;
- o3_mouseoff=ol_mouseoff;
- o3_closetitle=ol_closetitle;
- o3_css=ol_css;
- o3_compatmode=ol_compatmode;
- o3_fgclass=ol_fgclass;
- o3_bgclass=ol_bgclass;
- o3_textfontclass=ol_textfontclass;
- o3_captionfontclass=ol_captionfontclass;
- o3_closefontclass=ol_closefontclass;
-
- setRunTimeVariables();
-
- fnRef = '';
-
- // Special for frame support, over must be reset...
- o3_frame = ol_frame;
-
- if(!(over=createDivContainer())) return false;
-
- parseTokens('o3_', overlib.arguments);
- if (!postParseChecks()) return false;
-
- if (o3_delay == 0) {
- return runHook("olMain", FREPLACE);
- } else {
- o3_delayid = setTimeout("runHook('olMain', FREPLACE)", o3_delay);
- return false;
- }
-}
-
-// Clears popups if appropriate
-function nd(time) {
- if (olLoaded && !isExclusive()) {
- hideDelay(time); // delay popup close if time specified
-
- if (o3_removecounter >= 1) { o3_showingsticky = 0 };
-
- if (o3_showingsticky == 0) {
- o3_allowmove = 0;
- if (over != null && o3_timerid == 0) runHook("hideObject", FREPLACE, over);
- } else {
- o3_removecounter++;
- }
- }
-
- return true;
-}
-
-// The Close onMouseOver function for stickies
-function cClick() {
- if (olLoaded) {
- runHook("hideObject", FREPLACE, over);
- o3_showingsticky = 0;
- }
- return false;
-}
-
-// Method for setting page specific defaults.
-function overlib_pagedefaults() {
- parseTokens('ol_', overlib_pagedefaults.arguments);
-}
-
-
-////////
-// OVERLIB MAIN FUNCTION
-////////
-
-// This function decides what it is we want to display and how we want it done.
-function olMain() {
- var layerhtml, styleType;
- runHook("olMain", FBEFORE);
-
- if (o3_background!="" || o3_fullhtml) {
- // Use background instead of box.
- layerhtml = runHook('ol_content_background', FALTERNATE, o3_css, o3_text, o3_background, o3_fullhtml);
- } else {
- // They want a popup box.
- styleType = (pms[o3_css-1-pmStart] == "cssoff" || pms[o3_css-1-pmStart] == "cssclass");
-
- // Prepare popup background
- if (o3_fgbackground != "") o3_fgbackground = "background=\""+o3_fgbackground+"\"";
- if (o3_bgbackground != "") o3_bgbackground = (styleType ? "background=\""+o3_bgbackground+"\"" : o3_bgbackground);
-
- // Prepare popup colors
- if (o3_fgcolor != "") o3_fgcolor = (styleType ? "bgcolor=\""+o3_fgcolor+"\"" : o3_fgcolor);
- if (o3_bgcolor != "") o3_bgcolor = (styleType ? "bgcolor=\""+o3_bgcolor+"\"" : o3_bgcolor);
-
- // Prepare popup height
- if (o3_height > 0) o3_height = (styleType ? "height=\""+o3_height+"\"" : o3_height);
- else o3_height = "";
-
- // Decide which kinda box.
- if (o3_cap=="") {
- // Plain
- layerhtml = runHook('ol_content_simple', FALTERNATE, o3_css, o3_text);
- } else {
- // With caption
- if (o3_sticky) {
- // Show close text
- layerhtml = runHook('ol_content_caption', FALTERNATE, o3_css, o3_text, o3_cap, o3_close);
- } else {
- // No close text
- layerhtml = runHook('ol_content_caption', FALTERNATE, o3_css, o3_text, o3_cap, "");
- }
- }
- }
-
- // We want it to stick!
- if (o3_sticky) {
- if (o3_timerid > 0) {
- clearTimeout(o3_timerid);
- o3_timerid = 0;
- }
- o3_showingsticky = 1;
- o3_removecounter = 0;
- }
-
- // Created a separate routine to generate the popup to make it easier
- // to implement a plugin capability
- if (!runHook("createPopup", FREPLACE, layerhtml)) return false;
-
- // Prepare status bar
- if (o3_autostatus > 0) {
- o3_status = o3_text;
- if (o3_autostatus > 1) o3_status = o3_cap;
- }
-
- // When placing the layer the first time, even stickies may be moved.
- o3_allowmove = 0;
-
- // Initiate a timer for timeout
- if (o3_timeout > 0) {
- if (o3_timerid > 0) clearTimeout(o3_timerid);
- o3_timerid = setTimeout("cClick()", o3_timeout);
- }
-
- // Show layer
- runHook("disp", FREPLACE, o3_status);
- runHook("olMain", FAFTER);
-
- return (olOp && event && event.type == 'mouseover' && !o3_status) ? '' : (o3_status != '');
-}
-
-////////
-// LAYER GENERATION FUNCTIONS
-////////
-// These functions just handle popup content with tags that should adhere to the W3C standards specification.
-
-// Makes simple table without caption
-function ol_content_simple(text) {
- var cpIsMultiple = /,/.test(o3_cellpad);
- var txt = '
';
-
- set_background("");
- return txt;
-}
-
-// Makes table with caption and optional close link
-function ol_content_caption(text,title,close) {
- var nameId, txt, cpIsMultiple = /,/.test(o3_cellpad);
- var closing, closeevent;
-
- closing = "";
- closeevent = "onmouseover";
- if (o3_closeclick == 1) closeevent = (o3_closetitle ? "title='" + o3_closetitle +"'" : "") + " onclick";
- if (o3_capicon != "") {
- nameId = ' hspace = \"5\"'+' align = \"middle\" alt = \"\"';
- if (typeof o3_dragimg != 'undefined' && o3_dragimg) nameId =' hspace=\"5\"'+' name=\"'+o3_dragimg+'\" id=\"'+o3_dragimg+'\" align=\"middle\" alt=\"Drag Enabled\" title=\"Drag Enabled\"';
- o3_capicon = '';
- }
-
- if (close != "")
- closing = ''+(o3_closefontclass ? '' : wrapStr(0,o3_closesize,'close'))+close+(o3_closefontclass ? '' : wrapStr(1,o3_closesize,'close'))+' ';
- txt = '
';
-
- set_background("");
- return txt;
-}
-
-// Sets the background picture,padding and lots more. :)
-function ol_content_background(text,picture,hasfullhtml) {
- if (hasfullhtml) {
- txt=text;
- } else {
- txt='
';
- }
-
- set_background(picture);
- return txt;
-}
-
-// Loads a picture into the div.
-function set_background(pic) {
- if (pic == "") {
- if (olNs4) {
- over.background.src = null;
- } else if (over.style) {
- over.style.backgroundImage = "none";
- }
- } else {
- if (olNs4) {
- over.background.src = pic;
- } else if (over.style) {
- over.style.width=o3_width + 'px';
- over.style.backgroundImage = "url("+pic+")";
- }
- }
-}
-
-////////
-// HANDLING FUNCTIONS
-////////
-var olShowId=-1;
-
-// Displays the popup
-function disp(statustext) {
- runHook("disp", FBEFORE);
-
- if (o3_allowmove == 0) {
- runHook("placeLayer", FREPLACE);
- (olNs6&&olShowId<0) ? olShowId=setTimeout("runHook('showObject', FREPLACE, over)", 1) : runHook("showObject", FREPLACE, over);
- o3_allowmove = (o3_sticky || o3_followmouse==0) ? 0 : 1;
- }
-
- runHook("disp", FAFTER);
-
- if (statustext != "") self.status = statustext;
-}
-
-// Creates the actual popup structure
-function createPopup(lyrContent){
- runHook("createPopup", FBEFORE);
-
- if (o3_wrap) {
- var wd,ww,theObj = (olNs4 ? over : over.style);
- theObj.top = theObj.left = ((olIe4&&!olOp) ? 0 : -10000) + (!olNs4 ? 'px' : 0);
- layerWrite(lyrContent);
- wd = (olNs4 ? over.clip.width : over.offsetWidth);
- if (wd > (ww=windowWidth())) {
- lyrContent=lyrContent.replace(/\ /g, ' ');
- o3_width=ww;
- o3_wrap=0;
- }
- }
-
- layerWrite(lyrContent);
-
- // Have to set o3_width for placeLayer() routine if o3_wrap is turned on
- if (o3_wrap) o3_width=(olNs4 ? over.clip.width : over.offsetWidth);
-
- runHook("createPopup", FAFTER, lyrContent);
-
- return true;
-}
-
-// Decides where we want the popup.
-function placeLayer() {
- var placeX, placeY, widthFix = 0;
-
- // HORIZONTAL PLACEMENT, re-arranged to work in Safari
- if (o3_frame.innerWidth) widthFix=18;
- iwidth = windowWidth();
-
- // Horizontal scroll offset
- winoffset=(olIe4) ? eval('o3_frame.'+docRoot+'.scrollLeft') : o3_frame.pageXOffset;
-
- placeX = runHook('horizontalPlacement',FCHAIN,iwidth,winoffset,widthFix);
-
- // VERTICAL PLACEMENT, re-arranged to work in Safari
- if (o3_frame.innerHeight) {
- iheight=o3_frame.innerHeight;
- } else if (eval('o3_frame.'+docRoot)&&eval("typeof o3_frame."+docRoot+".clientHeight=='number'")&&eval('o3_frame.'+docRoot+'.clientHeight')) {
- iheight=eval('o3_frame.'+docRoot+'.clientHeight');
- }
-
- // Vertical scroll offset
- scrolloffset=(olIe4) ? eval('o3_frame.'+docRoot+'.scrollTop') : o3_frame.pageYOffset;
- placeY = runHook('verticalPlacement',FCHAIN,iheight,scrolloffset);
-
- // Actually move the object.
- repositionTo(over, placeX, placeY);
-}
-
-// Moves the layer
-function olMouseMove(e) {
- var e = (e) ? e : event;
-
- if (e.pageX) {
- o3_x = e.pageX;
- o3_y = e.pageY;
- } else if (e.clientX) {
- o3_x = eval('e.clientX+o3_frame.'+docRoot+'.scrollLeft');
- o3_y = eval('e.clientY+o3_frame.'+docRoot+'.scrollTop');
- }
-
- if (o3_allowmove == 1) runHook("placeLayer", FREPLACE);
-
- // MouseOut handler
- if (hoveringSwitch && !olNs4 && runHook("cursorOff", FREPLACE)) {
- (olHideDelay ? hideDelay(olHideDelay) : cClick());
- hoveringSwitch = !hoveringSwitch;
- }
-}
-
-// Fake function for 3.0 users.
-function no_overlib() { return ver3fix; }
-
-// Capture the mouse and chain other scripts.
-function olMouseCapture() {
- capExtent = document;
- var fN, str = '', l, k, f, wMv, sS, mseHandler = olMouseMove;
- var re = /function[ ]*(\w*)\(/;
-
- wMv = (!olIe4 && window.onmousemove);
- if (document.onmousemove || wMv) {
- if (wMv) capExtent = window;
- f = capExtent.onmousemove.toString();
- fN = f.match(re);
- if (fN == null) {
- str = f+'(e); ';
- } else if (fN[1] == 'anonymous' || fN[1] == 'olMouseMove' || (wMv && fN[1] == 'onmousemove')) {
- if (!olOp && wMv) {
- l = f.indexOf('{')+1;
- k = f.lastIndexOf('}');
- sS = f.substring(l,k);
- if ((l = sS.indexOf('(')) != -1) {
- sS = sS.substring(0,l).replace(/^\s+/,'').replace(/\s+$/,'');
- if (eval("typeof " + sS + " == 'undefined'")) window.onmousemove = null;
- else str = sS + '(e);';
- }
- }
- if (!str) {
- olCheckMouseCapture = false;
- return;
- }
- } else {
- if (fN[1]) str = fN[1]+'(e); ';
- else {
- l = f.indexOf('{')+1;
- k = f.lastIndexOf('}');
- str = f.substring(l,k) + '\n';
- }
- }
- str += 'olMouseMove(e); ';
- mseHandler = new Function('e', str);
- }
-
- capExtent.onmousemove = mseHandler;
- if (olNs4) capExtent.captureEvents(Event.MOUSEMOVE);
-}
-
-////////
-// PARSING FUNCTIONS
-////////
-
-// Does the actual command parsing.
-function parseTokens(pf, ar) {
- // What the next argument is expected to be.
- var v, i, mode=-1, par = (pf != 'ol_');
- var fnMark = (par && !ar.length ? 1 : 0);
-
- for (i = 0; i < ar.length; i++) {
- if (mode < 0) {
- // Arg is maintext,unless its a number between pmStart and pmUpper
- // then its a command.
- if (typeof ar[i] == 'number' && ar[i] > pmStart && ar[i] < pmUpper) {
- fnMark = (par ? 1 : 0);
- i--; // backup one so that the next block can parse it
- } else {
- switch(pf) {
- case 'ol_':
- ol_text = ar[i].toString();
- break;
- default:
- o3_text=ar[i].toString();
- }
- }
- mode = 0;
- } else {
- // Note: NS4 doesn't like switch cases with vars.
- if (ar[i] >= pmCount || ar[i]==DONOTHING) { continue; }
- if (ar[i]==INARRAY) { fnMark = 0; eval(pf+'text=ol_texts['+ar[++i]+'].toString()'); continue; }
- if (ar[i]==CAPARRAY) { eval(pf+'cap=ol_caps['+ar[++i]+'].toString()'); continue; }
- if (ar[i]==STICKY) { if (pf!='ol_') eval(pf+'sticky=1'); continue; }
- if (ar[i]==BACKGROUND) { eval(pf+'background="'+ar[++i]+'"'); continue; }
- if (ar[i]==NOCLOSE) { if (pf!='ol_') opt_NOCLOSE(); continue; }
- if (ar[i]==CAPTION) { eval(pf+"cap='"+escSglQuote(ar[++i])+"'"); continue; }
- if (ar[i]==CENTER || ar[i]==LEFT || ar[i]==RIGHT) { eval(pf+'hpos='+ar[i]); if(pf!='ol_') olHautoFlag=1; continue; }
- if (ar[i]==OFFSETX) { eval(pf+'offsetx='+ar[++i]); continue; }
- if (ar[i]==OFFSETY) { eval(pf+'offsety='+ar[++i]); continue; }
- if (ar[i]==FGCOLOR) { eval(pf+'fgcolor="'+ar[++i]+'"'); continue; }
- if (ar[i]==BGCOLOR) { eval(pf+'bgcolor="'+ar[++i]+'"'); continue; }
- if (ar[i]==TEXTCOLOR) { eval(pf+'textcolor="'+ar[++i]+'"'); continue; }
- if (ar[i]==CAPCOLOR) { eval(pf+'capcolor="'+ar[++i]+'"'); continue; }
- if (ar[i]==CLOSECOLOR) { eval(pf+'closecolor="'+ar[++i]+'"'); continue; }
- if (ar[i]==WIDTH) { eval(pf+'width='+ar[++i]); continue; }
- if (ar[i]==BORDER) { eval(pf+'border='+ar[++i]); continue; }
- if (ar[i]==CELLPAD) { i=opt_MULTIPLEARGS(++i,ar,(pf+'cellpad')); continue; }
- if (ar[i]==STATUS) { eval(pf+"status='"+escSglQuote(ar[++i])+"'"); continue; }
- if (ar[i]==AUTOSTATUS) { eval(pf +'autostatus=('+pf+'autostatus == 1) ? 0 : 1'); continue; }
- if (ar[i]==AUTOSTATUSCAP) { eval(pf +'autostatus=('+pf+'autostatus == 2) ? 0 : 2'); continue; }
- if (ar[i]==HEIGHT) { eval(pf+'height='+pf+'aboveheight='+ar[++i]); continue; } // Same param again.
- if (ar[i]==CLOSETEXT) { eval(pf+"close='"+escSglQuote(ar[++i])+"'"); continue; }
- if (ar[i]==SNAPX) { eval(pf+'snapx='+ar[++i]); continue; }
- if (ar[i]==SNAPY) { eval(pf+'snapy='+ar[++i]); continue; }
- if (ar[i]==FIXX) { eval(pf+'fixx='+ar[++i]); continue; }
- if (ar[i]==FIXY) { eval(pf+'fixy='+ar[++i]); continue; }
- if (ar[i]==RELX) { eval(pf+'relx='+ar[++i]); continue; }
- if (ar[i]==RELY) { eval(pf+'rely='+ar[++i]); continue; }
- if (ar[i]==FGBACKGROUND) { eval(pf+'fgbackground="'+ar[++i]+'"'); continue; }
- if (ar[i]==BGBACKGROUND) { eval(pf+'bgbackground="'+ar[++i]+'"'); continue; }
- if (ar[i]==PADX) { eval(pf+'padxl='+ar[++i]); eval(pf+'padxr='+ar[++i]); continue; }
- if (ar[i]==PADY) { eval(pf+'padyt='+ar[++i]); eval(pf+'padyb='+ar[++i]); continue; }
- if (ar[i]==FULLHTML) { if (pf!='ol_') eval(pf+'fullhtml=1'); continue; }
- if (ar[i]==BELOW || ar[i]==ABOVE) { eval(pf+'vpos='+ar[i]); if (pf!='ol_') olVautoFlag=1; continue; }
- if (ar[i]==CAPICON) { eval(pf+'capicon="'+ar[++i]+'"'); continue; }
- if (ar[i]==TEXTFONT) { eval(pf+"textfont='"+escSglQuote(ar[++i])+"'"); continue; }
- if (ar[i]==CAPTIONFONT) { eval(pf+"captionfont='"+escSglQuote(ar[++i])+"'"); continue; }
- if (ar[i]==CLOSEFONT) { eval(pf+"closefont='"+escSglQuote(ar[++i])+"'"); continue; }
- if (ar[i]==TEXTSIZE) { eval(pf+'textsize="'+ar[++i]+'"'); continue; }
- if (ar[i]==CAPTIONSIZE) { eval(pf+'captionsize="'+ar[++i]+'"'); continue; }
- if (ar[i]==CLOSESIZE) { eval(pf+'closesize="'+ar[++i]+'"'); continue; }
- if (ar[i]==TIMEOUT) { eval(pf+'timeout='+ar[++i]); continue; }
- if (ar[i]==FUNCTION) { if (pf=='ol_') { if (typeof ar[i+1]!='number') { v=ar[++i]; ol_function=(typeof v=='function' ? v : null); }} else {fnMark = 0; v = null; if (typeof ar[i+1]!='number') v = ar[++i]; opt_FUNCTION(v); } continue; }
- if (ar[i]==DELAY) { eval(pf+'delay='+ar[++i]); continue; }
- if (ar[i]==HAUTO) { eval(pf+'hauto=('+pf+'hauto == 0) ? 1 : 0'); continue; }
- if (ar[i]==VAUTO) { eval(pf+'vauto=('+pf+'vauto == 0) ? 1 : 0'); continue; }
- if (ar[i]==CLOSECLICK) { eval(pf +'closeclick=('+pf+'closeclick == 0) ? 1 : 0'); continue; }
- if (ar[i]==WRAP) { eval(pf +'wrap=('+pf+'wrap == 0) ? 1 : 0'); continue; }
- if (ar[i]==FOLLOWMOUSE) { eval(pf +'followmouse=('+pf+'followmouse == 1) ? 0 : 1'); continue; }
- if (ar[i]==MOUSEOFF) { eval(pf +'mouseoff=('+pf+'mouseoff==0) ? 1 : 0'); v=ar[i+1]; if (pf != 'ol_' && eval(pf+'mouseoff') && typeof v == 'number' && (v < pmStart || v > pmUpper)) olHideDelay=ar[++i]; continue; }
- if (ar[i]==CLOSETITLE) { eval(pf+"closetitle='"+escSglQuote(ar[++i])+"'"); continue; }
- if (ar[i]==CSSOFF||ar[i]==CSSCLASS) { eval(pf+'css='+ar[i]); continue; }
- if (ar[i]==COMPATMODE) { eval(pf+'compatmode=('+pf+'compatmode==0) ? 1 : 0'); continue; }
- if (ar[i]==FGCLASS) { eval(pf+'fgclass="'+ar[++i]+'"'); continue; }
- if (ar[i]==BGCLASS) { eval(pf+'bgclass="'+ar[++i]+'"'); continue; }
- if (ar[i]==TEXTFONTCLASS) { eval(pf+'textfontclass="'+ar[++i]+'"'); continue; }
- if (ar[i]==CAPTIONFONTCLASS) { eval(pf+'captionfontclass="'+ar[++i]+'"'); continue; }
- if (ar[i]==CLOSEFONTCLASS) { eval(pf+'closefontclass="'+ar[++i]+'"'); continue; }
- i = parseCmdLine(pf, i, ar);
- }
- }
-
- if (fnMark && o3_function) o3_text = o3_function();
-
- if ((pf == 'o3_') && o3_wrap) {
- o3_width = 0;
-
- var tReg=/<.*\n*>/ig;
- if (!tReg.test(o3_text)) o3_text = o3_text.replace(/[ ]+/g, ' ');
- if (!tReg.test(o3_cap))o3_cap = o3_cap.replace(/[ ]+/g, ' ');
- }
- if ((pf == 'o3_') && o3_sticky) {
- if (!o3_close && (o3_frame != ol_frame)) o3_close = ol_close;
- if (o3_mouseoff && (o3_frame == ol_frame)) opt_NOCLOSE(' ');
- }
-}
-
-
-////////
-// LAYER FUNCTIONS
-////////
-
-// Writes to a layer
-function layerWrite(txt) {
- txt += "\n";
- if (olNs4) {
- var lyr = o3_frame.document.layers['overDiv'].document
- lyr.write(txt)
- lyr.close()
- } else if (typeof over.innerHTML != 'undefined') {
- if (olIe5 && isMac) over.innerHTML = '';
- over.innerHTML = txt;
- } else {
- range = o3_frame.document.createRange();
- range.setStartAfter(over);
- domfrag = range.createContextualFragment(txt);
-
- while (over.hasChildNodes()) {
- over.removeChild(over.lastChild);
- }
-
- over.appendChild(domfrag);
- }
-}
-
-// Make an object visible
-function showObject(obj) {
- runHook("showObject", FBEFORE);
-
- var theObj=(olNs4 ? obj : obj.style);
- theObj.visibility = 'visible';
-
- runHook("showObject", FAFTER);
-}
-
-// Hides an object
-function hideObject(obj) {
- runHook("hideObject", FBEFORE);
-
- var theObj=(olNs4 ? obj : obj.style);
- if (olNs6 && olShowId>0) { clearTimeout(olShowId); olShowId=0; }
- theObj.visibility = 'hidden';
- theObj.top = theObj.left = ((olIe4&&!olOp) ? 0 : -10000) + (!olNs4 ? 'px' : 0);
-
- if (o3_timerid > 0) clearTimeout(o3_timerid);
- if (o3_delayid > 0) clearTimeout(o3_delayid);
-
- o3_timerid = 0;
- o3_delayid = 0;
- self.status = "";
-
- if (obj.onmouseout||obj.onmouseover) {
- if (olNs4) obj.releaseEvents(Event.MOUSEOUT || Event.MOUSEOVER);
- obj.onmouseout = obj.onmouseover = null;
- }
-
- runHook("hideObject", FAFTER);
-}
-
-// Move a layer
-function repositionTo(obj, xL, yL) {
- var theObj=(olNs4 ? obj : obj.style);
- theObj.left = xL + (!olNs4 ? 'px' : 0);
- theObj.top = yL + (!olNs4 ? 'px' : 0);
-}
-
-// Check position of cursor relative to overDiv DIVision; mouseOut function
-function cursorOff() {
- var left = parseInt(over.style.left);
- var top = parseInt(over.style.top);
- var right = left + (over.offsetWidth >= parseInt(o3_width) ? over.offsetWidth : parseInt(o3_width));
- var bottom = top + (over.offsetHeight >= o3_aboveheight ? over.offsetHeight : o3_aboveheight);
-
- if (o3_x < left || o3_x > right || o3_y < top || o3_y > bottom) return true;
-
- return false;
-}
-
-
-////////
-// COMMAND FUNCTIONS
-////////
-
-// Calls callme or the default function.
-function opt_FUNCTION(callme) {
- o3_text = (callme ? (typeof callme=='string' ? (/.+\(.*\)/.test(callme) ? eval(callme) : callme) : callme()) : (o3_function ? o3_function() : 'No Function'));
-
- return 0;
-}
-
-// Handle hovering
-function opt_NOCLOSE(unused) {
- if (!unused) o3_close = "";
-
- if (olNs4) {
- over.captureEvents(Event.MOUSEOUT || Event.MOUSEOVER);
- over.onmouseover = function () { if (o3_timerid > 0) { clearTimeout(o3_timerid); o3_timerid = 0; } }
- over.onmouseout = function (e) { if (olHideDelay) hideDelay(olHideDelay); else cClick(e); }
- } else {
- over.onmouseover = function () {hoveringSwitch = true; if (o3_timerid > 0) { clearTimeout(o3_timerid); o3_timerid =0; } }
- }
-
- return 0;
-}
-
-// Function to scan command line arguments for multiples
-function opt_MULTIPLEARGS(i, args, parameter) {
- var k=i, re, pV, str='';
-
- for(k=i; kpmStart) break;
- str += args[k] + ',';
- }
- if (str) str = str.substring(0,--str.length);
-
- k--; // reduce by one so the for loop this is in works correctly
- pV=(olNs4 && /cellpad/i.test(parameter)) ? str.split(',')[0] : str;
- eval(parameter + '="' + pV + '"');
-
- return k;
-}
-
-// Remove in texts when done.
-function nbspCleanup() {
- if (o3_wrap) {
- o3_text = o3_text.replace(/\ /g, ' ');
- o3_cap = o3_cap.replace(/\ /g, ' ');
- }
-}
-
-// Escape embedded single quotes in text strings
-function escSglQuote(str) {
- return str.toString().replace(/'/g,"\\'");
-}
-
-// Onload handler for window onload event
-function OLonLoad_handler(e) {
- var re = /\w+\(.*\)[;\s]+/g, olre = /overlib\(|nd\(|cClick\(/, fn, l, i;
-
- if(!olLoaded) olLoaded=1;
-
- // Remove it for Gecko based browsers
- if(window.removeEventListener && e.eventPhase == 3) window.removeEventListener("load",OLonLoad_handler,false);
- else if(window.detachEvent) { // and for IE and Opera 4.x but execute calls to overlib, nd, or cClick()
- window.detachEvent("onload",OLonLoad_handler);
- var fN = document.body.getAttribute('onload');
- if (fN) {
- fN=fN.toString().match(re);
- if (fN && fN.length) {
- for (i=0; i' : '
') : '';
- else {
- fontStr='o3_'+whichString+'font';
- fontColor='o3_'+((whichString=='caption')? 'cap' : whichString)+'color';
- return (hasDims&&!olNs4) ? (isClose ? '' : '| Taxonomy Summary. Current Level: | |
| View Figure (.pdf) View Legend (.pdf) |
-- |
 |
-|
| View Table (.txt) |
| Total | 21 | 22 | 23 | |||
| Legend | Taxonomy | count | % | % | % | % |
| Unclassified;Other | 1 | 32.7% | 50.0% | 46.6% | 1.5% | |
| k__Bacteria;Other | 2 | 66.9% | 50.0% | 52.3% | 98.5% | |
| k__Bacteria;p__Proteobacteria | 0 | 0.4% | 0.0% | 1.1% | 0.0% | |
| Taxonomy Summary. Current Level: | |
| View Figure (.pdf) View Legend (.pdf) |
-- |
 |
-|
| View Table (.txt) |
| Total | 21 | 22 | 23 | |||
| Legend | Taxonomy | count | % | % | % | % |
| Unclassified;Other;Other | 1 | 32.7% | 50.0% | 46.6% | 1.5% | |
| k__Bacteria;Other;Other | 2 | 66.9% | 50.0% | 52.3% | 98.5% | |
| k__Bacteria;p__Proteobacteria;Other | 0 | 0.4% | 0.0% | 1.1% | 0.0% | |
| Taxonomy Summary. Current Level: | |
| View Figure (.pdf) View Legend (.pdf) |
-- |
 |
-|
| View Table (.txt) |
| Total | 21 | 22 | 23 | |||
| Legend | Taxonomy | count | % | % | % | % |
| Unclassified;Other;Other;Other | 1 | 32.7% | 50.0% | 46.6% | 1.5% | |
| k__Bacteria;Other;Other;Other | 2 | 66.9% | 50.0% | 52.3% | 98.5% | |
| k__Bacteria;p__Proteobacteria;Other;Other | 0 | 0.4% | 0.0% | 1.1% | 0.0% | |
| Taxonomy Summary. Current Level: | |
| View Figure (.pdf) View Legend (.pdf) |
-- |
 |
-|
| View Table (.txt) |
| Total | 21 | 22 | 23 | |||
| Legend | Taxonomy | count | % | % | % | % |
| Unclassified;Other;Other;Other;Other | 1 | 32.7% | 50.0% | 46.6% | 1.5% | |
| k__Bacteria;Other;Other;Other;Other | 2 | 66.9% | 50.0% | 52.3% | 98.5% | |
| k__Bacteria;p__Proteobacteria;Other;Other;Other | 0 | 0.4% | 0.0% | 1.1% | 0.0% | |
| Taxonomy Summary. Current Level: | |
| View Figure (.pdf) View Legend (.pdf) |
-- |
 |
-|
| View Table (.txt) |
| Total | 21 | 22 | 23 | |||
| Legend | Taxonomy | count | % | % | % | % |
| Unclassified;Other;Other;Other;Other;Other | 1 | 32.7% | 50.0% | 46.6% | 1.5% | |
| k__Bacteria;Other;Other;Other;Other;Other | 2 | 66.9% | 50.0% | 52.3% | 98.5% | |
| k__Bacteria;p__Proteobacteria;Other;Other;Other;Other | 0 | 0.4% | 0.0% | 1.1% | 0.0% | |
| Taxonomy Summary. Current Level: | |
| View Figure (.pdf) View Legend (.pdf) |
-- |
 |
-|
| View Table (.txt) |
| Total | 21 | 22 | 23 | |||
| Legend | Taxonomy | count | % | % | % | % |
| Unclassified;Other | 1 | 32.7% | 50.0% | 46.6% | 1.5% | |
| k__Bacteria;Other | 2 | 66.9% | 50.0% | 52.3% | 98.5% | |
| k__Bacteria;p__Proteobacteria | 0 | 0.4% | 0.0% | 1.1% | 0.0% | |
| Taxonomy Summary. Current Level: | |
| View Figure (.pdf) View Legend (.pdf) |
-- |
 |
-|
| View Table (.txt) |
| Total | 21 | 22 | 23 | |||
| Legend | Taxonomy | count | % | % | % | % |
| Unclassified;Other;Other | 1 | 32.7% | 50.0% | 46.6% | 1.5% | |
| k__Bacteria;Other;Other | 2 | 66.9% | 50.0% | 52.3% | 98.5% | |
| k__Bacteria;p__Proteobacteria;Other | 0 | 0.4% | 0.0% | 1.1% | 0.0% | |
| Taxonomy Summary. Current Level: | |
| View Figure (.pdf) View Legend (.pdf) |
-- |
 |
-|
| View Table (.txt) |
| Total | 21 | 22 | 23 | |||
| Legend | Taxonomy | count | % | % | % | % |
| Unclassified;Other;Other;Other | 1 | 32.7% | 50.0% | 46.6% | 1.5% | |
| k__Bacteria;Other;Other;Other | 2 | 66.9% | 50.0% | 52.3% | 98.5% | |
| k__Bacteria;p__Proteobacteria;Other;Other | 0 | 0.4% | 0.0% | 1.1% | 0.0% | |
| Taxonomy Summary. Current Level: | |
| View Figure (.pdf) View Legend (.pdf) |
-- |
 |
-|
| View Table (.txt) |
| Total | 21 | 22 | 23 | |||
| Legend | Taxonomy | count | % | % | % | % |
| Unclassified;Other;Other;Other;Other | 1 | 32.7% | 50.0% | 46.6% | 1.5% | |
| k__Bacteria;Other;Other;Other;Other | 2 | 66.9% | 50.0% | 52.3% | 98.5% | |
| k__Bacteria;p__Proteobacteria;Other;Other;Other | 0 | 0.4% | 0.0% | 1.1% | 0.0% | |
| Taxonomy Summary. Current Level: | |
| View Figure (.pdf) View Legend (.pdf) |
-- |
 |
-|
| View Table (.txt) |
| Total | 21 | 22 | 23 | |||
| Legend | Taxonomy | count | % | % | % | % |
| Unclassified;Other;Other;Other;Other;Other | 1 | 32.7% | 50.0% | 46.6% | 1.5% | |
| k__Bacteria;Other;Other;Other;Other;Other | 2 | 66.9% | 50.0% | 52.3% | 98.5% | |
| k__Bacteria;p__Proteobacteria;Other;Other;Other;Other | 0 | 0.4% | 0.0% | 1.1% | 0.0% | |
|
|
| '+(o3_textfontclass ? '' : wrapStr(0,o3_textsize,'text'))+text+(o3_textfontclass ? '' : wrapStr(1,o3_textsize))+' | ||
') : '';
- }
-}
-
-// Quotes Multi word font names; needed for CSS Standards adherence in font-family
-function quoteMultiNameFonts(theFont) {
- var v, pM=theFont.split(',');
- for (var i=0; i 0) clearTimeout(o3_timerid);
-
- o3_timerid=setTimeout("cClick()",(o3_timeout=time));
- }
-}
-
-// Was originally in the placeLayer() routine; separated out for future ease
-function horizontalPlacement(browserWidth, horizontalScrollAmount, widthFix) {
- var placeX, iwidth=browserWidth, winoffset=horizontalScrollAmount;
- var parsedWidth = parseInt(o3_width);
-
- if (o3_fixx > -1 || o3_relx != null) {
- // Fixed position
- placeX=(o3_relx != null ? ( o3_relx < 0 ? winoffset +o3_relx+ iwidth - parsedWidth - widthFix : winoffset+o3_relx) : o3_fixx);
- } else {
- // If HAUTO, decide what to use.
- if (o3_hauto == 1) {
- if ((o3_x - winoffset) > (iwidth / 2)) {
- o3_hpos = LEFT;
- } else {
- o3_hpos = RIGHT;
- }
- }
-
- // From mouse
- if (o3_hpos == CENTER) { // Center
- placeX = o3_x+o3_offsetx-(parsedWidth/2);
-
- if (placeX < winoffset) placeX = winoffset;
- }
-
- if (o3_hpos == RIGHT) { // Right
- placeX = o3_x+o3_offsetx;
-
- if ((placeX+parsedWidth) > (winoffset+iwidth - widthFix)) {
- placeX = iwidth+winoffset - parsedWidth - widthFix;
- if (placeX < 0) placeX = 0;
- }
- }
- if (o3_hpos == LEFT) { // Left
- placeX = o3_x-o3_offsetx-parsedWidth;
- if (placeX < winoffset) placeX = winoffset;
- }
-
- // Snapping!
- if (o3_snapx > 1) {
- var snapping = placeX % o3_snapx;
-
- if (o3_hpos == LEFT) {
- placeX = placeX - (o3_snapx+snapping);
- } else {
- // CENTER and RIGHT
- placeX = placeX+(o3_snapx - snapping);
- }
-
- if (placeX < winoffset) placeX = winoffset;
- }
- }
-
- return placeX;
-}
-
-// was originally in the placeLayer() routine; separated out for future ease
-function verticalPlacement(browserHeight,verticalScrollAmount) {
- var placeY, iheight=browserHeight, scrolloffset=verticalScrollAmount;
- var parsedHeight=(o3_aboveheight ? parseInt(o3_aboveheight) : (olNs4 ? over.clip.height : over.offsetHeight));
-
- if (o3_fixy > -1 || o3_rely != null) {
- // Fixed position
- placeY=(o3_rely != null ? (o3_rely < 0 ? scrolloffset+o3_rely+iheight - parsedHeight : scrolloffset+o3_rely) : o3_fixy);
- } else {
- // If VAUTO, decide what to use.
- if (o3_vauto == 1) {
- if ((o3_y - scrolloffset) > (iheight / 2) && o3_vpos == BELOW && (o3_y + parsedHeight + o3_offsety - (scrolloffset + iheight) > 0)) {
- o3_vpos = ABOVE;
- } else if (o3_vpos == ABOVE && (o3_y - (parsedHeight + o3_offsety) - scrolloffset < 0)) {
- o3_vpos = BELOW;
- }
- }
-
- // From mouse
- if (o3_vpos == ABOVE) {
- if (o3_aboveheight == 0) o3_aboveheight = parsedHeight;
-
- placeY = o3_y - (o3_aboveheight+o3_offsety);
- if (placeY < scrolloffset) placeY = scrolloffset;
- } else {
- // BELOW
- placeY = o3_y+o3_offsety;
- }
-
- // Snapping!
- if (o3_snapy > 1) {
- var snapping = placeY % o3_snapy;
-
- if (o3_aboveheight > 0 && o3_vpos == ABOVE) {
- placeY = placeY - (o3_snapy+snapping);
- } else {
- placeY = placeY+(o3_snapy - snapping);
- }
-
- if (placeY < scrolloffset) placeY = scrolloffset;
- }
- }
-
- return placeY;
-}
-
-// checks positioning flags
-function checkPositionFlags() {
- if (olHautoFlag) olHautoFlag = o3_hauto=0;
- if (olVautoFlag) olVautoFlag = o3_vauto=0;
- return true;
-}
-
-// get Browser window width
-function windowWidth() {
- var w;
- if (o3_frame.innerWidth) w=o3_frame.innerWidth;
- else if (eval('o3_frame.'+docRoot)&&eval("typeof o3_frame."+docRoot+".clientWidth=='number'")&&eval('o3_frame.'+docRoot+'.clientWidth'))
- w=eval('o3_frame.'+docRoot+'.clientWidth');
- return w;
-}
-
-// create the div container for popup content if it doesn't exist
-function createDivContainer(id,frm,zValue) {
- id = (id || 'overDiv'), frm = (frm || o3_frame), zValue = (zValue || 1000);
- var objRef, divContainer = layerReference(id);
-
- if (divContainer == null) {
- if (olNs4) {
- divContainer = frm.document.layers[id] = new Layer(window.innerWidth, frm);
- objRef = divContainer;
- } else {
- var body = (olIe4 ? frm.document.all.tags('BODY')[0] : frm.document.getElementsByTagName("BODY")[0]);
- if (olIe4&&!document.getElementById) {
- body.insertAdjacentHTML("beforeEnd",'');
- divContainer=layerReference(id);
- } else {
- divContainer = frm.document.createElement("DIV");
- divContainer.id = id;
- body.appendChild(divContainer);
- }
- objRef = divContainer.style;
- }
-
- objRef.position = 'absolute';
- objRef.visibility = 'hidden';
- objRef.zIndex = zValue;
- if (olIe4&&!olOp) objRef.left = objRef.top = '0px';
- else objRef.left = objRef.top = -10000 + (!olNs4 ? 'px' : 0);
- }
-
- return divContainer;
-}
-
-// get reference to a layer with ID=id
-function layerReference(id) {
- return (olNs4 ? o3_frame.document.layers[id] : (document.all ? o3_frame.document.all[id] : o3_frame.document.getElementById(id)));
-}
-////////
-// UTILITY FUNCTIONS
-////////
-
-// Checks if something is a function.
-function isFunction(fnRef) {
- var rtn = true;
-
- if (typeof fnRef == 'object') {
- for (var i = 0; i < fnRef.length; i++) {
- if (typeof fnRef[i]=='function') continue;
- rtn = false;
- break;
- }
- } else if (typeof fnRef != 'function') {
- rtn = false;
- }
-
- return rtn;
-}
-
-// Converts an array into an argument string for use in eval.
-function argToString(array, strtInd, argName) {
- var jS = strtInd, aS = '', ar = array;
- argName=(argName ? argName : 'ar');
-
- if (ar.length > jS) {
- for (var k = jS; k < ar.length; k++) aS += argName+'['+k+'], ';
- aS = aS.substring(0, aS.length-2);
- }
-
- return aS;
-}
-
-// Places a hook in the correct position in a hook point.
-function reOrder(hookPt, fnRef, order) {
- var newPt = new Array(), match, i, j;
-
- if (!order || typeof order == 'undefined' || typeof order == 'number') return hookPt;
-
- if (typeof order=='function') {
- if (typeof fnRef=='object') {
- newPt = newPt.concat(fnRef);
- } else {
- newPt[newPt.length++]=fnRef;
- }
-
- for (i = 0; i < hookPt.length; i++) {
- match = false;
- if (typeof fnRef == 'function' && hookPt[i] == fnRef) {
- continue;
- } else {
- for(j = 0; j < fnRef.length; j++) if (hookPt[i] == fnRef[j]) {
- match = true;
- break;
- }
- }
- if (!match) newPt[newPt.length++] = hookPt[i];
- }
-
- newPt[newPt.length++] = order;
-
- } else if (typeof order == 'object') {
- if (typeof fnRef == 'object') {
- newPt = newPt.concat(fnRef);
- } else {
- newPt[newPt.length++] = fnRef;
- }
-
- for (j = 0; j < hookPt.length; j++) {
- match = false;
- if (typeof fnRef == 'function' && hookPt[j] == fnRef) {
- continue;
- } else {
- for (i = 0; i < fnRef.length; i++) if (hookPt[j] == fnRef[i]) {
- match = true;
- break;
- }
- }
- if (!match) newPt[newPt.length++]=hookPt[j];
- }
-
- for (i = 0; i < newPt.length; i++) hookPt[i] = newPt[i];
- newPt.length = 0;
-
- for (j = 0; j < hookPt.length; j++) {
- match = false;
- for (i = 0; i < order.length; i++) {
- if (hookPt[j] == order[i]) {
- match = true;
- break;
- }
- }
- if (!match) newPt[newPt.length++] = hookPt[j];
- }
- newPt = newPt.concat(order);
- }
-
- hookPt = newPt;
-
- return hookPt;
-}
-
-////////
-// PLUGIN ACTIVATION FUNCTIONS
-////////
-
-// Runs plugin functions to set runtime variables.
-function setRunTimeVariables(){
- if (typeof runTime != 'undefined' && runTime.length) {
- for (var k = 0; k < runTime.length; k++) {
- runTime[k]();
- }
- }
-}
-
-// Runs plugin functions to parse commands.
-function parseCmdLine(pf, i, args) {
- if (typeof cmdLine != 'undefined' && cmdLine.length) {
- for (var k = 0; k < cmdLine.length; k++) {
- var j = cmdLine[k](pf, i, args);
- if (j >- 1) {
- i = j;
- break;
- }
- }
- }
-
- return i;
-}
-
-// Runs plugin functions to do things after parse.
-function postParseChecks(pf,args){
- if (typeof postParse != 'undefined' && postParse.length) {
- for (var k = 0; k < postParse.length; k++) {
- if (postParse[k](pf,args)) continue;
- return false; // end now since have an error
- }
- }
- return true;
-}
-
-
-////////
-// PLUGIN REGISTRATION FUNCTIONS
-////////
-
-// Registers commands and creates constants.
-function registerCommands(cmdStr) {
- if (typeof cmdStr!='string') return;
-
- var pM = cmdStr.split(',');
- pms = pms.concat(pM);
-
- for (var i = 0; i< pM.length; i++) {
- eval(pM[i].toUpperCase()+'='+pmCount++);
- }
-}
-
-// Registers no-parameter commands
-function registerNoParameterCommands(cmdStr) {
- if (!cmdStr && typeof cmdStr != 'string') return;
- pmt=(!pmt) ? cmdStr : pmt + ',' + cmdStr;
-}
-
-// Register a function to hook at a certain point.
-function registerHook(fnHookTo, fnRef, hookType, optPm) {
- var hookPt, last = typeof optPm;
-
- if (fnHookTo == 'plgIn'||fnHookTo == 'postParse') return;
- if (typeof hookPts[fnHookTo] == 'undefined') hookPts[fnHookTo] = new FunctionReference();
-
- hookPt = hookPts[fnHookTo];
-
- if (hookType != null) {
- if (hookType == FREPLACE) {
- hookPt.ovload = fnRef; // replace normal overlib routine
- if (fnHookTo.indexOf('ol_content_') > -1) hookPt.alt[pms[CSSOFF-1-pmStart]]=fnRef;
-
- } else if (hookType == FBEFORE || hookType == FAFTER) {
- var hookPt=(hookType == 1 ? hookPt.before : hookPt.after);
-
- if (typeof fnRef == 'object') {
- hookPt = hookPt.concat(fnRef);
- } else {
- hookPt[hookPt.length++] = fnRef;
- }
-
- if (optPm) hookPt = reOrder(hookPt, fnRef, optPm);
-
- } else if (hookType == FALTERNATE) {
- if (last=='number') hookPt.alt[pms[optPm-1-pmStart]] = fnRef;
- } else if (hookType == FCHAIN) {
- hookPt = hookPt.chain;
- if (typeof fnRef=='object') hookPt=hookPt.concat(fnRef); // add other functions
- else hookPt[hookPt.length++]=fnRef;
- }
-
- return;
- }
-}
-
-// Register a function that will set runtime variables.
-function registerRunTimeFunction(fn) {
- if (isFunction(fn)) {
- if (typeof fn == 'object') {
- runTime = runTime.concat(fn);
- } else {
- runTime[runTime.length++] = fn;
- }
- }
-}
-
-// Register a function that will handle command parsing.
-function registerCmdLineFunction(fn){
- if (isFunction(fn)) {
- if (typeof fn == 'object') {
- cmdLine = cmdLine.concat(fn);
- } else {
- cmdLine[cmdLine.length++] = fn;
- }
- }
-}
-
-// Register a function that does things after command parsing.
-function registerPostParseFunction(fn){
- if (isFunction(fn)) {
- if (typeof fn == 'object') {
- postParse = postParse.concat(fn);
- } else {
- postParse[postParse.length++] = fn;
- }
- }
-}
-
-////////
-// PLUGIN REGISTRATION FUNCTIONS
-////////
-
-// Runs any hooks registered.
-function runHook(fnHookTo, hookType) {
- var l = hookPts[fnHookTo], k, rtnVal = null, optPm, arS, ar = runHook.arguments;
-
- if (hookType == FREPLACE) {
- arS = argToString(ar, 2);
-
- if (typeof l == 'undefined' || !(l = l.ovload)) rtnVal = eval(fnHookTo+'('+arS+')');
- else rtnVal = eval('l('+arS+')');
-
- } else if (hookType == FBEFORE || hookType == FAFTER) {
- if (typeof l != 'undefined') {
- l=(hookType == 1 ? l.before : l.after);
-
- if (l.length) {
- arS = argToString(ar, 2);
- for (var k = 0; k < l.length; k++) eval('l[k]('+arS+')');
- }
- }
- } else if (hookType == FALTERNATE) {
- optPm = ar[2];
- arS = argToString(ar, 3);
-
- if (typeof l == 'undefined' || (l = l.alt[pms[optPm-1-pmStart]]) == 'undefined') {
- rtnVal = eval(fnHookTo+'('+arS+')');
- } else {
- rtnVal = eval('l('+arS+')');
- }
- } else if (hookType == FCHAIN) {
- arS=argToString(ar,2);
- l=l.chain;
-
- for (k=l.length; k > 0; k--) if((rtnVal=eval('l[k-1]('+arS+')'))!=void(0)) break;
- }
-
- return rtnVal;
-}
-
-////////
-// OBJECT CONSTRUCTORS
-////////
-
-// Object for handling hooks.
-function FunctionReference() {
- this.ovload = null;
- this.before = new Array();
- this.after = new Array();
- this.alt = new Array();
- this.chain = new Array();
-}
-
-// Object for simple access to the overLIB version used.
-// Examples: simpleversion:351 major:3 minor:5 revision:1
-function Info(version, prerelease) {
- this.version = version;
- this.prerelease = prerelease;
-
- this.simpleversion = Math.round(this.version*100);
- this.major = parseInt(this.simpleversion / 100);
- this.minor = parseInt(this.simpleversion / 10) - this.major * 10;
- this.revision = parseInt(this.simpleversion) - this.major * 100 - this.minor * 10;
- this.meets = meets;
-}
-
-// checks for Core Version required
-function meets(reqdVersion) {
- return (!reqdVersion) ? false : this.simpleversion >= Math.round(100*parseFloat(reqdVersion));
-}
-
-
-////////
-// STANDARD REGISTRATIONS
-////////
-registerHook("ol_content_simple", ol_content_simple, FALTERNATE, CSSOFF);
-registerHook("ol_content_caption", ol_content_caption, FALTERNATE, CSSOFF);
-registerHook("ol_content_background", ol_content_background, FALTERNATE, CSSOFF);
-registerHook("ol_content_simple", ol_content_simple, FALTERNATE, CSSCLASS);
-registerHook("ol_content_caption", ol_content_caption, FALTERNATE, CSSCLASS);
-registerHook("ol_content_background", ol_content_background, FALTERNATE, CSSCLASS);
-registerPostParseFunction(checkPositionFlags);
-registerHook("hideObject", nbspCleanup, FAFTER);
-registerHook("horizontalPlacement", horizontalPlacement, FCHAIN);
-registerHook("verticalPlacement", verticalPlacement, FCHAIN);
-if (olNs4||(olIe5&&isMac)||olKq) olLoaded=1;
-registerNoParameterCommands('sticky,autostatus,autostatuscap,fullhtml,hauto,vauto,closeclick,wrap,followmouse,mouseoff,compatmode');
-///////
-// ESTABLISH MOUSECAPTURING
-///////
-
-// Capture events, alt. diffuses the overlib function.
-var olCheckMouseCapture=true;
-if ((olNs4 || olNs6 || olIe4)) {
- olMouseCapture();
-} else {
- overlib = no_overlib;
- nd = no_overlib;
- ver3fix = true;
-}
diff --git a/core_diversity_analyses/core_output/taxa_plots_day/taxa_summary_plots/raw_data/day_otu_table_sorted_L2.txt b/core_diversity_analyses/core_output/taxa_plots_day/taxa_summary_plots/raw_data/day_otu_table_sorted_L2.txt
deleted file mode 100644
index 4149f1c..0000000
--- a/core_diversity_analyses/core_output/taxa_plots_day/taxa_summary_plots/raw_data/day_otu_table_sorted_L2.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-Taxon 21 22 23
-Unclassified;Other 0.5 0.465909090909 0.0151515151515
-k__Bacteria;Other 0.5 0.522727272727 0.984848484848
-k__Bacteria;p__Proteobacteria 0.0 0.0113636363636 0.0
diff --git a/core_diversity_analyses/core_output/taxa_plots_day/taxa_summary_plots/raw_data/day_otu_table_sorted_L3.txt b/core_diversity_analyses/core_output/taxa_plots_day/taxa_summary_plots/raw_data/day_otu_table_sorted_L3.txt
deleted file mode 100644
index 5548361..0000000
--- a/core_diversity_analyses/core_output/taxa_plots_day/taxa_summary_plots/raw_data/day_otu_table_sorted_L3.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-Taxon 21 22 23
-Unclassified;Other;Other 0.5 0.465909090909 0.0151515151515
-k__Bacteria;Other;Other 0.5 0.522727272727 0.984848484848
-k__Bacteria;p__Proteobacteria;Other 0.0 0.0113636363636 0.0
diff --git a/core_diversity_analyses/core_output/taxa_plots_day/taxa_summary_plots/raw_data/day_otu_table_sorted_L4.txt b/core_diversity_analyses/core_output/taxa_plots_day/taxa_summary_plots/raw_data/day_otu_table_sorted_L4.txt
deleted file mode 100644
index 5ee69df..0000000
--- a/core_diversity_analyses/core_output/taxa_plots_day/taxa_summary_plots/raw_data/day_otu_table_sorted_L4.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-Taxon 21 22 23
-Unclassified;Other;Other;Other 0.5 0.465909090909 0.0151515151515
-k__Bacteria;Other;Other;Other 0.5 0.522727272727 0.984848484848
-k__Bacteria;p__Proteobacteria;Other;Other 0.0 0.0113636363636 0.0
diff --git a/core_diversity_analyses/core_output/taxa_plots_day/taxa_summary_plots/raw_data/day_otu_table_sorted_L5.txt b/core_diversity_analyses/core_output/taxa_plots_day/taxa_summary_plots/raw_data/day_otu_table_sorted_L5.txt
deleted file mode 100644
index c32470b..0000000
--- a/core_diversity_analyses/core_output/taxa_plots_day/taxa_summary_plots/raw_data/day_otu_table_sorted_L5.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-Taxon 21 22 23
-Unclassified;Other;Other;Other;Other 0.5 0.465909090909 0.0151515151515
-k__Bacteria;Other;Other;Other;Other 0.5 0.522727272727 0.984848484848
-k__Bacteria;p__Proteobacteria;Other;Other;Other 0.0 0.0113636363636 0.0
diff --git a/core_diversity_analyses/core_output/taxa_plots_day/taxa_summary_plots/raw_data/day_otu_table_sorted_L6.txt b/core_diversity_analyses/core_output/taxa_plots_day/taxa_summary_plots/raw_data/day_otu_table_sorted_L6.txt
deleted file mode 100644
index 543df99..0000000
--- a/core_diversity_analyses/core_output/taxa_plots_day/taxa_summary_plots/raw_data/day_otu_table_sorted_L6.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-Taxon 21 22 23
-Unclassified;Other;Other;Other;Other;Other 0.5 0.465909090909 0.0151515151515
-k__Bacteria;Other;Other;Other;Other;Other 0.5 0.522727272727 0.984848484848
-k__Bacteria;p__Proteobacteria;Other;Other;Other;Other 0.0 0.0113636363636 0.0