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Commits on Apr 3, 2013

  1. Merge pull request #95 from gregcaporaso/deprecate

    @jairideout
    jairideout committed Apr 3, 2013 
    deprecate the qiime_test_data repository
    e336e53

  2. updated text

    @gregcaporaso
    gregcaporaso committed Apr 3, 2013
    41724d7

  3. updated with deprecation message.

    @gregcaporaso
    gregcaporaso committed Apr 3, 2013
    bb38a2a

  4. removed all data and code in favor of data in QIIME repo

    @gregcaporaso
    gregcaporaso committed Apr 3, 2013
    99544d0

  5. Merge pull request #94 from josenavas/make_bootstrapped_tree

    @gregcaporaso
    gregcaporaso committed Apr 3, 2013 
    Adding make_bootstrapped_tree folder
    1d3f14f
Commits on Apr 2, 2013

  1. Adding make_bootstrapped_tree folder

    jose jose
    jose authored and jose committed Apr 2, 2013
    ee83138
Commits on Apr 1, 2013

  1. Merge pull request #93 from lkursell/supervised_learning

    @gregcaporaso
    gregcaporaso committed Apr 1, 2013 
    Created new input and output directories for supervised_learning.py, which
    27dddf7

  2. Merge pull request #90 from lkursell/otu_category_significance

    @gregcaporaso
    gregcaporaso committed Apr 1, 2013 
    Added test files for non-collate on input directory - otu_category_significance.py
    c980822
Commits on Mar 28, 2013

  1. Created new input and output directories to reflect how supervised_le…

    @lkursell
    lkursell committed Mar 28, 2013 
    …arning can now handle an input directory, and can produce a resulting summary file if -w is passed
    b376c55
Commits on Mar 26, 2013

  1. Merge pull request #92 from gregcaporaso/simsam-updates

    @jairideout
    jairideout committed Mar 26, 2013 
    Simsam updates
    2f53b8f

  2. updated output file names

    @gregcaporaso
    gregcaporaso committed Mar 26, 2013
    f2aec4c

  3. updated output file names

    @gregcaporaso
    gregcaporaso committed Mar 26, 2013
    79c6465

  4. updated example output and added mapping file

    @gregcaporaso
    gregcaporaso committed Mar 26, 2013
    42429f3

  5. Merge pull request #91 from jrrideout/qiime-issue-784

    @gregcaporaso
    gregcaporaso committed Mar 26, 2013 
    Updated simsam.py output.
    3fb63b7

  6. Updated simsam.py output.

    @jairideout
    jairideout committed Mar 26, 2013
    92761d9
Commits on Mar 25, 2013

  1. Added test files for non-collate on input directory

    @lkursell
    lkursell committed Mar 25, 2013
    125e535
Commits on Mar 10, 2013

  1. Merge pull request #89 from gregcaporaso/issue-88

    @jairideout
    jairideout committed Mar 10, 2013 
    updated core diversity output
    ff3abed

  2. Merge pull request #85 from josenavas/ampliconnoise

    @jairideout
    jairideout committed Mar 10, 2013 
    Adding test folder for the ampliconnoise.py script
    6cdb1d6

  3. added new output

    @gregcaporaso
    gregcaporaso committed Mar 10, 2013
    5b48c34

  4. removed old output

    @gregcaporaso
    gregcaporaso committed Mar 10, 2013
    cf6fecd
Commits on Mar 6, 2013

  1. Merge pull request #87 from gregcaporaso/workflow-updates

    @jairideout
    jairideout committed Mar 6, 2013 
    update import to handle renaming of qiime/workflow.py
    97f7d74

  2. Adding test folder for the ampliconnoise.py script

    jose jose
    jose authored and jose committed Mar 6, 2013
    d4df829
Commits on Feb 21, 2013

  1. update import to handle renaming of qiime/workflow.py to qiime/workfl…

    @gregcaporaso
    gregcaporaso committed Feb 21, 2013 
    …ow/util.py, as described in qiime #698.
    a543b98
Commits on Feb 20, 2013

  1. Merge pull request #84 from gregcaporaso/core-analysis-updates

    @jairideout
    jairideout committed Feb 20, 2013 
    new files corresponding to refactoring of core_qiime_analysis to core_diversity_analyses
    1d3e84b
Commits on Feb 15, 2013

  1. added output directory (some updates to output from previous iteration)

    @gregcaporaso
    gregcaporaso committed Feb 15, 2013
    6cdfac1

  2. updating output

    @gregcaporaso
    gregcaporaso committed Feb 15, 2013
    cc879d1

  3. moved to reflect renaming of qiime script

    @gregcaporaso
    gregcaporaso committed Feb 15, 2013
    e4ae175
Commits on Feb 11, 2013

  1. Merge pull request #83 from josenavas/exclude_seqs_by_blast

    @gregcaporaso
    gregcaporaso committed Feb 11, 2013 
    Adding folder for exclude_seqs_by_blast
    030ca99
Commits on Feb 9, 2013

  1. added output directory

    @gregcaporaso
    gregcaporaso committed Feb 9, 2013
    b75e1db

  2. added updated files corresponding to qiime issue #477.

    @gregcaporaso
    gregcaporaso committed Feb 9, 2013
    1c5eec7
Commits on Feb 8, 2013

  1. Adding folder for exclude_seqs_by_blast

    jose jose
    jose authored and jose committed Feb 8, 2013
    b17d65e
Commits on Jan 27, 2013

  1. Merge pull request #82 from walterst/master

    @gregcaporaso
    gregcaporaso committed Jan 27, 2013 
    Updated add_qiime_labels test data
    571e1ca

  2. Modifying add_qiime_labels test data files to fix merge conflict.

    @walterst
    walterst committed Jan 27, 2013
    22ef925
Commits on Jan 25, 2013

  1. Merge pull request #75 from gregcaporaso/issue-73

    @wasade
    wasade committed Jan 25, 2013 
    This should address issue #73
    1d69ff8
Commits on Jan 22, 2013

  1. Added test data for add_qiime_labels.py

    @walterst
    walterst committed Jan 22, 2013
    73214de