genome-sampler

Tools for sampling viral genomes across time of isolation, location of isolation, and genome divergence.

To get started with genome-sampler, see our installation and usage tutorial.

To learn about genome-sampler, read our paper.

This software is a QIIME 2 plugin implementing the subsampling workflow that was initially developed for the Arizona COVID-19 Genomics Union analysis of SARS-CoV-2 genomes.

If you're interested in contributing to genome-sampler, please review the software project's code of conduct, which is adapted from the Contributor Covenant, version 1.4.

If you use genome-sampler in any published work, please cite our paper.