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* Adding new credits

* Initial template for DOI

Missing all contributors listed in AUTHORS.

* Adding contributors Zenodo's DOI setup

Still missing some parameters. I'll let each one to update their own
information, such as ORCID.

* Adding Uday's ORCID

* I know Callum's ORCID

* Updating contributors

- DOI has somehow a limited list of possible type of participation. The
  best option seem to be ProjectMember.
- I'm adding everyone in the AUTHORS, but bug reports are not included
  in the DOI, i.e. one have to add or edit some content to be included.
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July 21, 2015 09:48

Seabird

https://readthedocs.org/projects/seabird/badge/?version=latest

This is a parser for Sea Bird CTD and TSG output files.

The Sea Bird CTD post processed data usually uses the .cnv extention. The purpose of the PySeabird is to parse this type of files, considering the different versions along the time, as well as different setups.

At this point my goal is to have an object with the attributes parsed from the header, and the data as Masked Arrays, so that the user doesn't need to loose time evaluating the version and details of that cnv, but have it in a standard pattern, ready to use.

ATENTION, this is not an official package, so if you have trouble with it, do not complain to Sea-Bird. Open an issue at GitHub (https://github.com/castelao/seabird/issues), and I'll try to help you.

Support and Documentation

The documentation is available at seabird.readthedocs.org.

The Seasoft manual might be the best reference for the format used.

If PySeabird doesn't work with your .cnv files, send me a sample (just one .cnv) and I'll fix to run it. The SeaBird changed the format several times along the time, so I need to see what do you have, to adjust PySeabird to work with it.

Quick howto use

To install:

pip install seabird

One way to use is running on the shell the cnvdump. Independent of the historical version of the cnv file, it will return a default structure:

seabird cnvdump your_file.cnv

To convert a .cnv (CTD output) into a NetCDF file, run:

seabird cnv2nc your_file.cnv

In a python script, one can use like this:

from seabird.cnv import fCNV

profile = fCNV('your_file.cnv')

profile.attrs # It will return the header, as a dictionary.

profile.keys() # It will list the available variables.

profile['TEMP2'] # If TEMP2 was on the .keys(), this is how you get the data. It will be a masked array.

Check the example notebooks: http://nbviewer.ipython.org/github/castelao/seabird/tree/master/docs/notebooks/

License

seabird is licensed under a 3-clause BSD style license - see LICENSE.rst

Authors

Guilherme Castelão <guilherme@castelao.net> and Luiz Irber <luiz.irber@gmail.com>