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README
connectivityDemo.m
learnConnectivity.m
sampleDataV1VP.mat
sampleDataV4PPA.mat

README

Estimates function connectivity maps from fMRI data, as described in these two papers:

C. Baldassano, M.C. Iordan, D.M. Beck, L. Fei-Fei. "Voxel-Level
Functional Connectivity using Spatial Regularization." Neuroimage.
2012 Jul 28;63(3):1099-1106. doi: 10.1016/j.neuroimage.2012.07.046

C. Baldassano, M.C. Iordan, D.M. Beck, L. Fei-Fei. "Discovering
Voxel-Level Functional Connectivity Between Cortical Regions."
Machine Learning and Interpretation in Neuroimaging Workshop, Neural
Information Processing Systems (NIPS) 2012.

Please cite these papers if you publish results using this function.
Any comments, questions, or bug reports can be directed to
Chris Baldassano <chrisb33@cs.stanford.edu> <chrisbaldassano.com>

Copyright (c) 2014, Christopher Baldassano, Stanford University

All rights reserved.
 
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:

* Redistributions of source code must retain the above copyright
notice, this list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above copyright
notice, this list of conditions and the following disclaimer in the
documentation and/or other materials provided with the distribution.
* Neither the name of Stanford University nor the
names of its contributors may be used to endorse or promote products
derived from this software without specific prior written permission.
 
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
DISCLAIMED. IN NO EVENT SHALL CHRISTOPHER BALDASSANO BE LIABLE FOR ANY
DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.