A tool for the visualization and analysis of longitudinal behavioral data
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Failed to load latest commit information.
.circleci
data
doc
examples
pergola
sample_data
test
.gitignore
Dockerfile
LICENSE
MANIFEST.in
README.md
README.rst
TODO.md
commits
feeding_behavior_HF_mice.xlsx
md2rst.py
nextflow.config
requirements.txt
setup.cfg
setup.py

README.md

Pergola web server

CircleCI status

A python library for the conversion of behavioral data into genome browser compatible formats. Once behavioral data is formatted in genomic formats it is easy to use genomic software tools for its analysis. For instance you can query your data using BEDTools or visualize your records using a genome browser (see snapshot below corresponding to a rendering of mice feeding behavior on the IGV genome browser).

For more information, instructions for installation and tutorials please visit:

Pergola documentation

You can also use our web server still under development:

Pergola web server

Mouse feeding behavior-IGV snapshot