The Xeml Lab Designer provides an interactive timeline visualisation that enables the intuitive design of experiments in terms of growth conditions and sampling strategy using related Ontologies (Xeo, EnvO, EO) while the corresponding metadata are automatically stored in the background in Xeml standardized format, ready for data mining.
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README.md

XEML-Lab 1.0

===========

Introduction

========== The Xeml Lab Designer provides an interactive timeline visualisation that enables the intuitive design of experiments in terms of growth conditions and sampling strategy using related Ontologies (Xeo, EnvO, EO) while the corresponding metadata are automatically stored in the background in Xeml standardized format, ready for data mining.

Installation

================================

See INSTALL for operating system requirements, prerequisite software, and installation instructions.

Easy install

================

Mac version (10.7 and earlier)

Linux version (ubuntu 12.04 and earlier)

Documentation

=========== See DOC for Documentation on classes and code architecture. You will also find a short tutorial on how to use Xeml lab Software.

##Problems and comments

To report any issue, please use the button "Issues" on this window or click here : issue on git hub

Xeml‑Lab is a software designed for experiments adapted to the study of plants. This software still needs patches and fixes. When you are using it, you may encounter some errors, like bugs or functions that don't respond as expected. To help us improving Xeml‑Lab, we kindly ask you to report every problems you have faced.

To do this, please go to this address : https://github.com/cbib/XEML-Lab/issues/new

Please fill all the fields :

  • Title : Put a short and clear title, this will help us to classify the requests and repair them as efficiency as possible

  • In the “Labels” pannel on the rigth, select “bug” or “question” depending on your needs

  • In “Leave a comment”, leave a comment... describing precisely your issue

  • The issue that happened (ex : the software dont repond, the software crashed, I can't add a floting value in XXX field...)

  • The place where it happened (ex : In the main window, when I tried to declare a new genotype...) -Try to remember what you did before the issue ( I add a cyclic value, then removed it, then add another one...)

Generally speaking try to give as much detail as possible, like the values you have entered and all that you seem wise to provide to us, each detail can help us to resolve the issue faster. At the end, click on “Submit” We will provide you an answer as fast as we can !

In last resort, contact us at : macha@labri.fr benjamin.dartigues@u-bordeaux.fr emmanuel.bouilhol@u-bordeaux.fr

Developers Notes

=============

  1. Clone from github (you have to be granted access to this git repository): hg clone https://github.com/cbib/XEML-Lab.git

  2. Install Qt Library 4.8 or higher coupled qith QtCreator 2.6 or higher.

  3. Open XemlLab.pro files with QtCreator 2.6 or higher.

  4. Use qmake to build the makefile and then run the application.

Licence

==========

Copyright (c) 2013, Benjamin Dartigues (2)

(2) CBIB, Centre de génomique fonctionnelle, 146, rue Léo Saignat 33076 Bordeaux cedex

All rights reserved.

Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:

  1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
  2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.

THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

The views and conclusions contained in the software and documentation are those of the authors and should not be interpreted as representing official policies, either expressed or implied, of the FreeBSD Project.