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_build git config needed to deploy Feb 23, 2017
_includes tidy rdfa a bit Jul 22, 2016
_layouts tweak vita layout, strip to pure markdown Nov 26, 2015
_plugins add rss_feed Nov 18, 2015
_sass update vita numbering Aug 27, 2016
assets fix deploy script Jan 27, 2017
.drone.yml make figure dir if not available Jan 13, 2015
.gitignore update gitignore Nov 26, 2015
.htaccess keep a local copy of the .htaccess file Mar 6, 2013
404.html more academicons Jan 2, 2015
CNAME update CNAME to deploy Jan 2, 2015
COPYING Modified language refering to CC0 declaration, #110 Nov 27, 2013 Update Oct 30, 2016
_config.yml fix typo, so much for edits from a phone May 20, 2016 update CNAME to deploy Jan 2, 2015
blurb.txt blurb Jun 1, 2015 tidy calendar Mar 18, 2015
categories.html fix missing yaml on tags Jan 2, 2015
circle.yml try again Dec 10, 2016 remove manual timestamp tag in favor of git modified based timestamp Jun 5, 2013
favicon.ico use ESPM image Jul 15, 2015
index.html lab -> group, member page width Sep 19, 2016
lab-notebook.html link to notebook-preview style pages Jul 21, 2016
members.html update milad website, cv links Oct 1, 2016 add figshare icon; Jan 13, 2015 update pubs Sep 16, 2015
robots.txt sitemap and robots.txt can be defined per repo Jan 5, 2015
sitemap.txt sitemap and robots.txt can be defined per repo Jan 5, 2015
tags.html fix missing yaml on tags Jan 2, 2015 fix deploy script Jan 27, 2017 add breakthroughs piece Feb 23, 2017

About this site


This site is built with Jekyll and hosted on GitHub Pages. Site source at cboettig/ Please report errors or feedback here. The repository hosts the main pages, while my lab notebooks are now hosted from separate GitHub repositories by year as described in this post. For more about the open lab notebook, please see this introduction

Site Features & Credits

Notebook Archiving & Data Management

The lab notebook is written and maintained in plain text (UTF-8) using markdown. All files are kept in a version managed repository system using git, which provides unique SHA hashes to protect against corruption. Synchronized backups of the git repository are maintained on both local and remote servers to protect against hardware failures, as well as on the public international software repository, GitHub Version history preserves a time-line of changes and protects against user error file loss. Archival copies of notebook entries shall be published annually to figshare

Building from source

This site is built automatically using Docker and Drone CI, as described in this post. This site repository also now includes a Dockerfile for generating a portable docker container to generate the site. A separate Dockerfile for building boostrap 3.1.1 CSS can be found in the assets/_bootstrap-3.1.1 directory.

NOTE: This site is developed for my own needs and may be difficult to adapt directly to another purpose. If you are new to Jekyll, consider starting with a Jekyll theme such as Poole.

Copyrights & License

All original content unless otherwise specified is placed in the public domain by Carl Boettiger to the extent possible under law by the Creative Commons Zero declaration, CC0. Please remember to cite or attribute this content where appropriate.

Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation or the University of California.