diff --git a/DESCRIPTION b/DESCRIPTION index 54bbc42..dcb6831 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,5 +1,5 @@ Package: pmc -Version: 1.0.5 +Version: 1.0.6 Title: Phylogenetic Monte Carlo Description: Monte Carlo based model choice for applied phylogenetics of continuous traits. Method described in Carl Boettiger, Graham Coop, diff --git a/NEWS b/NEWS.md similarity index 96% rename from NEWS rename to NEWS.md index 690dc5e..d16f5de 100644 --- a/NEWS +++ b/NEWS.md @@ -1,7 +1,7 @@ ## News -For a complete discription of changes see the +For a complete description of changes see the [Issues page](https://github.com/cboettig/pmc/issues) on the package development site on GitHub. diff --git a/R/pmc-package.R b/R/pmc-package.R index a65cf64..6eb57da 100644 --- a/R/pmc-package.R +++ b/R/pmc-package.R @@ -1,3 +1,4 @@ +#' @aliases pmc-package #' @keywords internal "_PACKAGE" diff --git a/README.md b/README.md index a014c8e..2272b6f 100644 --- a/README.md +++ b/README.md @@ -1,7 +1,7 @@ [![Travis-CI Build -Status](https://travis-ci.org/cboettig/pmc.svg?branch=master)](https://travis-ci.org/cboettig/pmc) +Status](https://app.travis-ci.com/cboettig/pmc.svg?branch=master)](https://app.travis-ci.com/cboettig/pmc) [![Coverage Status](https://coveralls.io/repos/cboettig/pmc/badge.svg)](https://coveralls.io/github/cboettig/pmc) [![CRAN diff --git a/man/figures/README-unnamed-chunk-3-1.png b/man/figures/README-unnamed-chunk-3-1.png deleted file mode 100644 index ecf3891..0000000 Binary files a/man/figures/README-unnamed-chunk-3-1.png and /dev/null differ diff --git a/man/pmc-package.Rd b/man/pmc-package.Rd index d54927c..412edde 100644 --- a/man/pmc-package.Rd +++ b/man/pmc-package.Rd @@ -2,8 +2,8 @@ % Please edit documentation in R/pmc-package.R \docType{package} \name{pmc-package} -\alias{pmc} \alias{pmc-package} +\alias{_PACKAGE} \title{pmc: Phylogenetic Monte Carlo} \description{ Monte Carlo based model choice for applied phylogenetics of continuous traits. Method described in Carl Boettiger, Graham Coop, Peter Ralph (2012) Is your phylogeny informative? Measuring the power of comparative methods, Evolution 66 (7) 2240-51. \doi{10.1111/j.1558-5646.2011.01574.x}. diff --git a/pmc.Rproj b/pmc.Rproj index 21a4da0..1788e68 100644 --- a/pmc.Rproj +++ b/pmc.Rproj @@ -15,3 +15,4 @@ LaTeX: pdfLaTeX BuildType: Package PackageUseDevtools: Yes PackageInstallArgs: --no-multiarch --with-keep.source +PackageRoxygenize: rd,collate,namespace,vignette