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cbrnr/README.md

About me

I am a senior postdoc with a background in electrical/biomedical engineering and computer engineering. I work at the Educational Neuroscience group at the Institute of Psychology, University of Graz, Austria.

I am interested in neuroscientific substrates of number processing and arithmetic, EEG oscillations and connectivity analysis, biomedical signal processing, applied machine learning and statistics, brain-computer interfaces, and software development. I am a big fan of open source software and I believe that science should be open as well, including data and analysis scripts. Python is my favorite language, but I also enjoy performing data analysis and statistical tests with R (thanks in particular to its awesome Tidyverse). I have also started to use Julia recently.

I maintain and develop the following larger projects:

  • MNELAB, a graphical user interface for processing EEG/MEG data using MNE-Python
  • SleepECG, a Python package for sleep staging using ECG (which includes a fast R-peak detector)
  • HeartBeats.jl, a Pan-Tompkins R-peak ECG detector in Julia
  • XDF.jl, a Julia package for reading XDF files
  • SigViewer, a Qt/C++ based biosignal visualization tool
  • SCoT, a Python package for EEG-based source connectivity estimation

In addition, I am part of the MNE-Python and pyXDF development teams, and I have contributed to numerous open source projects such as scikit-learn, pandas, PsychoPy, SciPy, Matplotlib, pybv, BioSig, and several smaller contributions for other projects (check out my GitHub profile for a detailed activity summary).

I mainly work on macOS, but I also like Arch Linux, for which I maintain several packages in the AUR.

Pinned

  1. mnelab Public

    MNELAB – a GUI for MNE

    Python 163 51

  2. MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python

    Python 2k 1.1k

  3. sleepecg Public

    Sleep stage detection using ECG

    Python 34 8

  4. XDF.jl Public

    Load XDF files in Julia

    Julia 9 2

  5. sigviewer Public

    SigViewer is a viewing application for biosignals.

    C++ 109 35

880 contributions in the last year

Aug Sep Oct Nov Dec Jan Feb Mar Apr May Jun Jul Mon Wed Fri

Contribution activity

August 2022

Created 12 commits in 2 repositories

Created a pull request in mne-tools/mne-python that received 18 comments

Use scipy.io.loadmat() fallback for EEGLAB reader

Fixes #11005. Tests need to be adapted to test HDF5 and non-HDF5 files separately.

+119 −14 18 comments
Reviewed 2 pull requests in 1 repository
mne-tools/mne-python 2 pull requests

Created an issue in cbrnr/sleepecg that received 12 comments

GUDB readers do not work anymore?

It looks like GUDB is not accessible anymore, at least not without registration: https://berndporr.github.io/ECG-GUDB/ Our reader errors out, e.g. 4…

12 comments

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