classSNitch (R-randomforests-dtw)
Summary: Autonomous classifier for RNA structure change in genome-wide experimental data (R package)
- Created a survey website using HTML and PHP that collects data from human experts
- Stored and analyzed human expert data in MySQL database
- Trained supervised learning models on expert labels with magnitude and time-series features in R and Weka
- Used the random forest classification model to predict structure change in 2000+ experimental traces
- Developed stand-alone application in R for prediction of RNA structure change
For more information: http://classsnitch.r-forge.r-project.org/