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3D Slicer Extension Implementation the CoLlAGe radiomics descriptor
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CLIModule_ColiageFilter
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README.md

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CoLlAGe Filter Extension

  • This extension provides user-friendly 3D Slicer plugin for the CoLlAGe radiomics descriptor.

Co-occurrence of Local Anisotropic Gradient Orientations (CoLlAGe)

CoLlAGe captures subtle anisotropic differences in disease pathologies by measuring entropy of co-occurrences of voxel-level gradient orientations on imaging computed within a local neighborhood. CoLlAGe is based on the hypothesis that disruption in tissue microarchitecture can be quantified on imaging by measuring the disorder in voxel-wise gradient orientations. CoLlAGe involves assigning every image voxel a ‘disorder value’ associated with the co-occurrence matrix of gradient orientations computed around every voxel. Details on extraction of CoLlAGe features are included in [1]. After feature extraction, the subsequent distribution or different statistics such as mean, median, variance etc can be computed and used in conjunction with a machine learning classifier to distinguish similar appearing pathologies. The feasibility of CoLlAGe in distinguishing cancer from treatment confounders/benign conditions and characterizing molecular subtypes of cancers has been demonstrated in the context of multiple challenging clinical problems.

References

  • [1] Prasanna, P., Tiwari, P., & Madabhushi, A. (2016). Co-occurrence of Local Anisotropic Gradient Orientations (CoLlAGe): A new radiomics descriptor. Scientific Reports, 6:37241.

Licenses

  • This code comes under the following license: Apache 2.0 - Read file: LICENSE
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