From e008ff082681a7d51cba3df64ce7fb6bdf25df2f Mon Sep 17 00:00:00 2001 From: Kevin Lu <6320810+kevinlul@users.noreply.github.com> Date: Wed, 15 Dec 2021 11:37:36 -0500 Subject: [PATCH] Fix newly added genomes not being added to JBrowse.conf correctly --- src/setup/fetch_and_setup_ensembl.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/setup/fetch_and_setup_ensembl.py b/src/setup/fetch_and_setup_ensembl.py index ffe22ed..1ca2359 100755 --- a/src/setup/fetch_and_setup_ensembl.py +++ b/src/setup/fetch_and_setup_ensembl.py @@ -358,7 +358,7 @@ def load_gff_into_JBrowse(root_dir,jbrowse_path, jbrowse_data_directory, jbrowse if dataset_id_exists is False: jbrowse_fh.write(dataset_id+"\n") jbrowse_fh.write('url = ?data='+os.path.basename(jbrowse_data_directory)+"\n") - jbrowse_fh.write('name = '+ genome.lower()) + jbrowse_fh.write('name = '+ genome.lower() + "\n\n") gRNA_gff = os.path.join(jbrowse_data_directory,"gRNA_CRISPR.gff") primer_gff = os.path.join(jbrowse_data_directory,"acceptedPrimers.gff")