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Genome-scale metabolic model reconstruction with CarveMe

CarveMe is a python-based tool for genome-scale metabolic model reconstruction.


For instructions on installation and usage please check:

Credits and License

For citation purposes please refer to our paper:

D. Machado et al, "Fast automated reconstruction of genome-scale metabolic models for microbial species and communities", Nucleic Acids Research, gky537, 2018. doi:

Developed at:

  • European Molecular Biology Laboratory (2017-2019).
  • Norwegian University of Science and Technology (Since 2020)

CarveMe is now an official service of ELIXIR Norway.