Metabolic Modeling Tutorials

This repository contains a few tutorials on metabolic modeling. To run the examples please follow the installation instructions first.

Installation

To run these tutorials you need a Python 3.6 environment. If you don't have one already, you can install miniconda. Then you need to install ReFramed and a few other packages.

pip install reframed escher cplex matplotlib mewpy

Please note that this will install the free version of CPLEX, which is limited to the simulation of small models. To install the full version you should obtain an academic license.

Running the examples

Just start jupyter from a terminal and you will be able to run the exercises in your browser.

jupyter notebook

Credits and License

Daniel Machado, Norwegian University of Science and Technology (NTNU), 2021

This work is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License.