Scripts and results from gene expression methods assessment paper:
D. Machado, M.J. Herrgard. Systematic Evaluation of Methods for Integration of Transcriptomic Data into Constraint-Based Models of Metabolism. PLoS Computational Biology, 10(4), 2014.
Install cobra toolbox for matlab from: http://opencobra.sourceforge.net/
Install MADE from: http://www.bme.virginia.edu/csbl/downloads-made.php
Install a solver with support for LP, QP and MILP (recommended: Gurobi 5.5)
Use main.m to run all tests from the paper.